| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is 116249143
Identifier: 116249143
GI number: 116249143
Start: 519351
End: 520244
Strand: Direct
Name: 116249143
Synonym: pRL120479
Alternate gene names: NA
Gene position: 519351-520244 (Clockwise)
Preceding gene: 116249142
Following gene: 116249144
Centisome position: 59.69
GC content: 60.85
Gene sequence:
>894_bases ATGGGTCGTATGCGCTGGCCGCTGGTTGCGGCCGCTCTCGTCTGCGCCATGGCCGCAAGTGCTGCCGGCATGGTTGGCGC GTCTGATACCACCGATCAATCCCTGCTTCAGATCGAGCAGGTGGCGTCGCGCCTTTCCGGCACGCCTGCCGCTGTCGAAA ATGTCGCGAAGGCTGCGGCCGATCGGGGCATTTCGGCGACTTCGGATGCGCAGCCGCTGCTTGAAACGGCGGCGCGGTCT TCCTTCAAGGCCGACAGCATGCTTGCCGAAATATCGAAAGCCGTGGGTGAGGCAGGCGACGGTGCCGCTGATCCGAGGGC CTTCGCCAAAACGGCAGCGGCTCTGGAAGAGGGACAGACGAAGGTCGCTCGCATGTATGAAGCGCAGGACCAAACAACGG CGAAAGACATCGAAACGCGTCTTGCCAACCCGGACAACGGTCCGCGTATCAGTCGGCTTGCCGATCTGATGGCCGGCCCG GATCTCGCCGTGGACACCGCTTTTACCGCACAGCTCATGTATCTCTGCCTTGAGGCTCTTTCCAATTCCGATGTCGAGAC ACTGGCGTCCGCTTCAAAGGACAAGCTGCAATCCGAAATGCAGGGCGTGATCTCGTCGCTGCGTTCGAAGAGCGAGAACG AAAAGCCGGTTCCCAAGGACATAGCGCGGGCGAACGAAAAGACGCGCCTGGCCTTTGTGCTGGCCACTCTGTCTCCGGAA GACGTCTCGGTGCTGACGGATTTCTACGAGAGCCCGGGTGGAAAGGCCAAGCGCGACGCGCTCATCGAAAGTTACAGGCG GGCGTCCGATCAGGCCAATACCGAAATGCTGGGGCAGTATTTCCAGGCACTGGCGGATTTTCTCAAAACCCATCCTCCGA CGCAACAGCAGTAG
Upstream 100 bases:
>100_bases CCGTCTGTCCACCGAAGCGCGGCCCAAGCAGCTCACCGACGTCAGGATGATCTGAGGGGTGTCGATGCTGTTGACGGATC TCCTGAAGCCGCACGGATTG
Downstream 100 bases:
>100_bases TAATTCGGCTCCCAAGACGGAACGTGATGTTATGGACGATTTGCAATCCCTCGCCGCGGATTTCATCCAGGCGAACCGTA TTCTGAAGATCGTCTCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MGRMRWPLVAAALVCAMAASAAGMVGASDTTDQSLLQIEQVASRLSGTPAAVENVAKAAADRGISATSDAQPLLETAARS SFKADSMLAEISKAVGEAGDGAADPRAFAKTAAALEEGQTKVARMYEAQDQTTAKDIETRLANPDNGPRISRLADLMAGP DLAVDTAFTAQLMYLCLEALSNSDVETLASASKDKLQSEMQGVISSLRSKSENEKPVPKDIARANEKTRLAFVLATLSPE DVSVLTDFYESPGGKAKRDALIESYRRASDQANTEMLGQYFQALADFLKTHPPTQQQ
Sequences:
>Translated_297_residues MGRMRWPLVAAALVCAMAASAAGMVGASDTTDQSLLQIEQVASRLSGTPAAVENVAKAAADRGISATSDAQPLLETAARS SFKADSMLAEISKAVGEAGDGAADPRAFAKTAAALEEGQTKVARMYEAQDQTTAKDIETRLANPDNGPRISRLADLMAGP DLAVDTAFTAQLMYLCLEALSNSDVETLASASKDKLQSEMQGVISSLRSKSENEKPVPKDIARANEKTRLAFVLATLSPE DVSVLTDFYESPGGKAKRDALIESYRRASDQANTEMLGQYFQALADFLKTHPPTQQQ >Mature_296_residues GRMRWPLVAAALVCAMAASAAGMVGASDTTDQSLLQIEQVASRLSGTPAAVENVAKAAADRGISATSDAQPLLETAARSS FKADSMLAEISKAVGEAGDGAADPRAFAKTAAALEEGQTKVARMYEAQDQTTAKDIETRLANPDNGPRISRLADLMAGPD LAVDTAFTAQLMYLCLEALSNSDVETLASASKDKLQSEMQGVISSLRSKSENEKPVPKDIARANEKTRLAFVLATLSPED VSVLTDFYESPGGKAKRDALIESYRRASDQANTEMLGQYFQALADFLKTHPPTQQQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31478; Mature: 31346
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRMRWPLVAAALVCAMAASAAGMVGASDTTDQSLLQIEQVASRLSGTPAAVENVAKAAA CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH DRGISATSDAQPLLETAARSSFKADSMLAEISKAVGEAGDGAADPRAFAKTAAALEEGQT HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH KVARMYEAQDQTTAKDIETRLANPDNGPRISRLADLMAGPDLAVDTAFTAQLMYLCLEAL HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH SNSDVETLASASKDKLQSEMQGVISSLRSKSENEKPVPKDIARANEKTRLAFVLATLSPE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHEECCCCH DVSVLTDFYESPGGKAKRDALIESYRRASDQANTEMLGQYFQALADFLKTHPPTQQQ HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure GRMRWPLVAAALVCAMAASAAGMVGASDTTDQSLLQIEQVASRLSGTPAAVENVAKAAA CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH DRGISATSDAQPLLETAARSSFKADSMLAEISKAVGEAGDGAADPRAFAKTAAALEEGQT HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH KVARMYEAQDQTTAKDIETRLANPDNGPRISRLADLMAGPDLAVDTAFTAQLMYLCLEAL HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH SNSDVETLASASKDKLQSEMQGVISSLRSKSENEKPVPKDIARANEKTRLAFVLATLSPE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHEECCCCH DVSVLTDFYESPGGKAKRDALIESYRRASDQANTEMLGQYFQALADFLKTHPPTQQQ HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA