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The map label for this gene is amyD [H]

Identifier: 116249021

GI number: 116249021

Start: 381208

End: 382137

Strand: Direct

Name: amyD [H]

Synonym: pRL120352

Alternate gene names: 116249021

Gene position: 381208-382137 (Clockwise)

Preceding gene: 116249020

Following gene: 116249022

Centisome position: 43.82

GC content: 58.06

Gene sequence:

>930_bases
ATGAGCCCCATTGCCATCGAGGCTGACAGCCCGCCTCAAAGCAGAACGTTCATGCGCCGTTTCGCCGGTGCGCCCCTGCC
CTGGATTATGCCCGTGATCGTCGTCATCGGCATCTTCTACCTTTACCCCGTCATCGACGTTTTCAGGCTTTCATTCACCA
ATGCCACGCTGATCGGCGACAATCAGGATTATACGCTGGGGTCGATCACCAATGCGTTGAGCTCGCCGCAGCTACCCGAC
ATTTTATGGGCGACCCTGATCTTTGTCGGCGGCAGCGTTATCGGTCAGCAGATTTTAGGCCTTGCGGTCGCCGTCGTGGT
TATCCGCGGCGAAAAGCGCGGCCTGTTCGGCACCACCATTTTGAGGACGACGGCGCTGGTTGCCTGGGTTGTCCCCGGAA
TTGCCGGCGGCATCATCTGGCAGATGCTCTTTTCCGAAGCGCCTTATGGTGCGTTGAACAGCATTCTGAGGCTAATGCAC
ATGCCTGTTGTCGCCTGGCTCTCGGATCCTGCTATTGCGCCGTGGTCTACCCTCATCTCCAACATATGGCGCGGCACGGC
ATTTTCGATGGTCGTCATGTATGCGGCGCTGAAGTCGATCGATCCCTCGCTCTATGAAGCGGCGGAGGTCGACGGCGCGA
CGGCATCGCAGCAGTTTTTCTTCGTCACGCTTCCGCAGCTGCGCGCGGCAATCCTCGTCAACATGATCCTCATTACGATC
CAGACGGTGAATACCTTCGATGCGATCATCACGCTGACGGGCGGCGGTCCGGGGCGTGCGACCGAGGTCATCTCGCTCTA
CGTCTTCAATATCGTCTTTAGAAACTACGACCTGTCCGGCGGCAGCGTGCTCTCCGTGCTCATGCTGATCATCAGCCTCG
GGCTTGCCTTTATCTATGCGTCGTTCCTGCCGAAGGAGGAAGAGCAATGA

Upstream 100 bases:

>100_bases
GCGGCGCTGGAGGCCTACAAGCGTCTCTAGTGCTTCCGACCGTGACGGCGCCTGCCTGCCAGGCGCCGTCGACATTGCGA
AACCCCGCACAGAGAAGCCA

Downstream 100 bases:

>100_bases
GCGGACGGACCGGAACGCGGCTCGGCGATGCCATGAGCTATCTGTTCATGCTGGTAATGTTCGTATTCTTCGCCGGCCCC
CTCACCTATCTCCTGTCGAT

Product: putative permease component of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MSPIAIEADSPPQSRTFMRRFAGAPLPWIMPVIVVIGIFYLYPVIDVFRLSFTNATLIGDNQDYTLGSITNALSSPQLPD
ILWATLIFVGGSVIGQQILGLAVAVVVIRGEKRGLFGTTILRTTALVAWVVPGIAGGIIWQMLFSEAPYGALNSILRLMH
MPVVAWLSDPAIAPWSTLISNIWRGTAFSMVVMYAALKSIDPSLYEAAEVDGATASQQFFFVTLPQLRAAILVNMILITI
QTVNTFDAIITLTGGGPGRATEVISLYVFNIVFRNYDLSGGSVLSVLMLIISLGLAFIYASFLPKEEEQ

Sequences:

>Translated_309_residues
MSPIAIEADSPPQSRTFMRRFAGAPLPWIMPVIVVIGIFYLYPVIDVFRLSFTNATLIGDNQDYTLGSITNALSSPQLPD
ILWATLIFVGGSVIGQQILGLAVAVVVIRGEKRGLFGTTILRTTALVAWVVPGIAGGIIWQMLFSEAPYGALNSILRLMH
MPVVAWLSDPAIAPWSTLISNIWRGTAFSMVVMYAALKSIDPSLYEAAEVDGATASQQFFFVTLPQLRAAILVNMILITI
QTVNTFDAIITLTGGGPGRATEVISLYVFNIVFRNYDLSGGSVLSVLMLIISLGLAFIYASFLPKEEEQ
>Mature_308_residues
SPIAIEADSPPQSRTFMRRFAGAPLPWIMPVIVVIGIFYLYPVIDVFRLSFTNATLIGDNQDYTLGSITNALSSPQLPDI
LWATLIFVGGSVIGQQILGLAVAVVVIRGEKRGLFGTTILRTTALVAWVVPGIAGGIIWQMLFSEAPYGALNSILRLMHM
PVVAWLSDPAIAPWSTLISNIWRGTAFSMVVMYAALKSIDPSLYEAAEVDGATASQQFFFVTLPQLRAAILVNMILITIQ
TVNTFDAIITLTGGGPGRATEVISLYVFNIVFRNYDLSGGSVLSVLMLIISLGLAFIYASFLPKEEEQ

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=260, Percent_Identity=29.6153846153846, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790465, Length=221, Percent_Identity=28.9592760180996, Blast_Score=78, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33509; Mature: 33378

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPIAIEADSPPQSRTFMRRFAGAPLPWIMPVIVVIGIFYLYPVIDVFRLSFTNATLIGD
CCCEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
NQDYTLGSITNALSSPQLPDILWATLIFVGGSVIGQQILGLAVAVVVIRGEKRGLFGTTI
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHH
LRTTALVAWVVPGIAGGIIWQMLFSEAPYGALNSILRLMHMPVVAWLSDPAIAPWSTLIS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
NIWRGTAFSMVVMYAALKSIDPSLYEAAEVDGATASQQFFFVTLPQLRAAILVNMILITI
HHHCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH
QTVNTFDAIITLTGGGPGRATEVISLYVFNIVFRNYDLSGGSVLSVLMLIISLGLAFIYA
HHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
SFLPKEEEQ
HHCCCCCCC
>Mature Secondary Structure 
SPIAIEADSPPQSRTFMRRFAGAPLPWIMPVIVVIGIFYLYPVIDVFRLSFTNATLIGD
CCEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
NQDYTLGSITNALSSPQLPDILWATLIFVGGSVIGQQILGLAVAVVVIRGEKRGLFGTTI
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHH
LRTTALVAWVVPGIAGGIIWQMLFSEAPYGALNSILRLMHMPVVAWLSDPAIAPWSTLIS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
NIWRGTAFSMVVMYAALKSIDPSLYEAAEVDGATASQQFFFVTLPQLRAAILVNMILITI
HHHCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH
QTVNTFDAIITLTGGGPGRATEVISLYVFNIVFRNYDLSGGSVLSVLMLIISLGLAFIYA
HHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
SFLPKEEEQ
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]