| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is gsiB [H]
Identifier: 116249002
GI number: 116249002
Start: 357489
End: 359063
Strand: Direct
Name: gsiB [H]
Synonym: pRL120333
Alternate gene names: 116249002
Gene position: 357489-359063 (Clockwise)
Preceding gene: 116249000
Following gene: 116249003
Centisome position: 41.09
GC content: 58.54
Gene sequence:
>1575_bases ATGGCCGCAAAAACATTGACGCGGGCAGCGATCGGGCTGCTTGGCACGATTGCTATTCCTGCAATGGCCGCCGCACAGGA AACCCCGCTGACGATCGGGATGTCGACGACGCCGACGACGCTGGATCCTCATGAAGACAGTTCGGCGCCAAACAATGCGA CCTCGCGCCATATCTGGGACAGCCTGATAAACCTCACGGGAACGTCGGCAAATGCGCCGGAACTCGCCACCGAATGGAAG GTCGTCGACCCTACTCACTGGGAATTCAAGCTGCGGAAGGGCGTGAAATTCCATGACGGCAGCGAGTTCAACGCCGATGA CGTCATCGCTTCGCTTCTGCGTGCCCGCGACAAGCCCAGCCAGAGCTTTGCTTCCTACACCCGCAATATTGTCAATGTCA CCGCCACGGATCCCTATACCATCGTCGTCGAGACAAAGGTTCCGGATCCGATCCTGCTGAATTCCGTCAGCCGAATTCGC ATTATCAGCGCCGATTGCAAGGAGGCGCCAGTCCAGGATTTCGACAACGGCAAGTGTGCAATCGGAACCGGGGCCTATTC CTTCGTCTCCTATTCGCCAGGCAGCAACCTGACCTTGAAGCGCAATGACAGCTATTTCGCAGGCCCCTCGCACTGGTCGA ACGTCACGCTGCGCTTCCTGCCCGATGACGGCGCCCGTCTGGCATCGCTTCTCTCCAACGAGATCGACCTTATCGAAACC CTTCCTGCCGATGGAATGGCACGCGTGGAAGCGAGCGATAATCTGCAAGTCATCAACGGCCTGTCTTCCCGCTTCGTTTA TCTTGGCCTCGATGTCAGCCGCGATGTTTCACCTTTCGTGAAGGCTGCGGATGGTTCCGATCTCGACAAGAACCCGCTCA AGGATGAACGGGTGCGTCGGGCAATGCTGATGTCGATCAACCGGCCGGCAATCGTCGACCGCGTCATGCAGAAGAACGGC ACGGTGGCCGACCAATTCGTCACCCAAGGCTATGCGGGCTATTCCGGAAAAGTCGAGAAGGTGGGTTATGATCCCGCCGC CGCCAAGGCGCTTTTGGCCGAGGCCGGTTATCCCGATGGCTTCAGCCTGACCCTGCACGGTCCCTCTGGCCGTTACGTCA AGGATGCCGAAGTTCTGCAGGCGGTCGGCCAGATGTTCACACGCATCGGCATCAAATCGAAAGTCGAAGTCCTGCCCTGG TCGATGTATTCGGAAGCCTATTCAAAGGGCACCTACAGCACCTATTTCGGCTCCTGGGGTGTGAACACCGGCGAAACCAC CAATCCGACTGTCGCGCTCGTCGCCACGCGCGACGAGAAAAAGGGGACCGGCAGATATAACGGCGGCGGCGTGTCCGATC CGAAGATCGACGAGGTACTGGCCAAGGCGAGTTCGACACTCGATGAAGCTGCACGGGCGCCCCTTCTCGAGGAACTGTCG ACCGAGACCTTCAACAACCTCTGGCTCCTCCCGATGCATTACGAAAACGTCGTGCTGGGTGCAAAGAAGACCGTGTCCTA CACCCCGCGCGGTGACAAATATACGCTCGCTTACGACGTGAAGCCGGCGGATTAA
Upstream 100 bases:
>100_bases CCTTGAGGCCCCCTTACCAATTTGTGTCAAGAGTGGACGGGAACCTGCTCGCACCGACCAAGCAAGGTCGGCCCAAAAAC GCTAAACCGGGATGGAAGAA
Downstream 100 bases:
>100_bases TGCATGTCGTCCGAAAGCGTGCAGCGGTTTTGGGACAAATAAAGATTTGAAGTGCGTCGCATCGATCCAATCGATGCGGC GCGGTTTAAAAAGAGCAGCA
Product: putative substrate-binding component of ABC transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 524; Mature: 523
Protein sequence:
>524_residues MAAKTLTRAAIGLLGTIAIPAMAAAQETPLTIGMSTTPTTLDPHEDSSAPNNATSRHIWDSLINLTGTSANAPELATEWK VVDPTHWEFKLRKGVKFHDGSEFNADDVIASLLRARDKPSQSFASYTRNIVNVTATDPYTIVVETKVPDPILLNSVSRIR IISADCKEAPVQDFDNGKCAIGTGAYSFVSYSPGSNLTLKRNDSYFAGPSHWSNVTLRFLPDDGARLASLLSNEIDLIET LPADGMARVEASDNLQVINGLSSRFVYLGLDVSRDVSPFVKAADGSDLDKNPLKDERVRRAMLMSINRPAIVDRVMQKNG TVADQFVTQGYAGYSGKVEKVGYDPAAAKALLAEAGYPDGFSLTLHGPSGRYVKDAEVLQAVGQMFTRIGIKSKVEVLPW SMYSEAYSKGTYSTYFGSWGVNTGETTNPTVALVATRDEKKGTGRYNGGGVSDPKIDEVLAKASSTLDEAARAPLLEELS TETFNNLWLLPMHYENVVLGAKKTVSYTPRGDKYTLAYDVKPAD
Sequences:
>Translated_524_residues MAAKTLTRAAIGLLGTIAIPAMAAAQETPLTIGMSTTPTTLDPHEDSSAPNNATSRHIWDSLINLTGTSANAPELATEWK VVDPTHWEFKLRKGVKFHDGSEFNADDVIASLLRARDKPSQSFASYTRNIVNVTATDPYTIVVETKVPDPILLNSVSRIR IISADCKEAPVQDFDNGKCAIGTGAYSFVSYSPGSNLTLKRNDSYFAGPSHWSNVTLRFLPDDGARLASLLSNEIDLIET LPADGMARVEASDNLQVINGLSSRFVYLGLDVSRDVSPFVKAADGSDLDKNPLKDERVRRAMLMSINRPAIVDRVMQKNG TVADQFVTQGYAGYSGKVEKVGYDPAAAKALLAEAGYPDGFSLTLHGPSGRYVKDAEVLQAVGQMFTRIGIKSKVEVLPW SMYSEAYSKGTYSTYFGSWGVNTGETTNPTVALVATRDEKKGTGRYNGGGVSDPKIDEVLAKASSTLDEAARAPLLEELS TETFNNLWLLPMHYENVVLGAKKTVSYTPRGDKYTLAYDVKPAD >Mature_523_residues AAKTLTRAAIGLLGTIAIPAMAAAQETPLTIGMSTTPTTLDPHEDSSAPNNATSRHIWDSLINLTGTSANAPELATEWKV VDPTHWEFKLRKGVKFHDGSEFNADDVIASLLRARDKPSQSFASYTRNIVNVTATDPYTIVVETKVPDPILLNSVSRIRI ISADCKEAPVQDFDNGKCAIGTGAYSFVSYSPGSNLTLKRNDSYFAGPSHWSNVTLRFLPDDGARLASLLSNEIDLIETL PADGMARVEASDNLQVINGLSSRFVYLGLDVSRDVSPFVKAADGSDLDKNPLKDERVRRAMLMSINRPAIVDRVMQKNGT VADQFVTQGYAGYSGKVEKVGYDPAAAKALLAEAGYPDGFSLTLHGPSGRYVKDAEVLQAVGQMFTRIGIKSKVEVLPWS MYSEAYSKGTYSTYFGSWGVNTGETTNPTVALVATRDEKKGTGRYNGGGVSDPKIDEVLAKASSTLDEAARAPLLEELST ETFNNLWLLPMHYENVVLGAKKTVSYTPRGDKYTLAYDVKPAD
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: COG0747
COG function: function code E; ABC-type dipeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=516, Percent_Identity=25.968992248062, Blast_Score=142, Evalue=6e-35, Organism=Escherichia coli, GI1789966, Length=500, Percent_Identity=26.2, Blast_Score=131, Evalue=8e-32, Organism=Escherichia coli, GI87081878, Length=488, Percent_Identity=25.2049180327869, Blast_Score=102, Evalue=6e-23, Organism=Escherichia coli, GI1789887, Length=542, Percent_Identity=21.5867158671587, Blast_Score=85, Evalue=9e-18, Organism=Escherichia coli, GI1787762, Length=500, Percent_Identity=21.6, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI1787495, Length=540, Percent_Identity=22.037037037037, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI1787551, Length=456, Percent_Identity=22.1491228070175, Blast_Score=79, Evalue=8e-16, Organism=Escherichia coli, GI1789397, Length=492, Percent_Identity=20.7317073170732, Blast_Score=73, Evalue=6e-14, Organism=Escherichia coli, GI1786256, Length=172, Percent_Identity=29.6511627906977, Blast_Score=68, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 56730; Mature: 56599
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAKTLTRAAIGLLGTIAIPAMAAAQETPLTIGMSTTPTTLDPHEDSSAPNNATSRHIWD CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH SLINLTGTSANAPELATEWKVVDPTHWEFKLRKGVKFHDGSEFNADDVIASLLRARDKPS HHHHCCCCCCCCCCHHCCCEEECCCCCEEEECCCCEECCCCCCCHHHHHHHHHHHCCCCH QSFASYTRNIVNVTATDPYTIVVETKVPDPILLNSVSRIRIISADCKEAPVQDFDNGKCA HHHHHHHCCEEEEEECCCEEEEEECCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCEE IGTGAYSFVSYSPGSNLTLKRNDSYFAGPSHWSNVTLRFLPDDGARLASLLSNEIDLIET EECCCEEEEEECCCCCEEEEECCCEECCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHH LPADGMARVEASDNLQVINGLSSRFVYLGLDVSRDVSPFVKAADGSDLDKNPLKDERVRR CCCCCEEEEECCCCCCEECCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCCCCHHHHHHH AMLMSINRPAIVDRVMQKNGTVADQFVTQGYAGYSGKVEKVGYDPAAAKALLAEAGYPDG HHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCC FSLTLHGPSGRYVKDAEVLQAVGQMFTRIGIKSKVEVLPWSMYSEAYSKGTYSTYFGSWG EEEEEECCCCCEECHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCCEEEECCCC VNTGETTNPTVALVATRDEKKGTGRYNGGGVSDPKIDEVLAKASSTLDEAARAPLLEELS CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHH TETFNNLWLLPMHYENVVLGAKKTVSYTPRGDKYTLAYDVKPAD HHHHCCEEEEEEECCCEEECCCCEEEECCCCCEEEEEEECCCCC >Mature Secondary Structure AAKTLTRAAIGLLGTIAIPAMAAAQETPLTIGMSTTPTTLDPHEDSSAPNNATSRHIWD CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH SLINLTGTSANAPELATEWKVVDPTHWEFKLRKGVKFHDGSEFNADDVIASLLRARDKPS HHHHCCCCCCCCCCHHCCCEEECCCCCEEEECCCCEECCCCCCCHHHHHHHHHHHCCCCH QSFASYTRNIVNVTATDPYTIVVETKVPDPILLNSVSRIRIISADCKEAPVQDFDNGKCA HHHHHHHCCEEEEEECCCEEEEEECCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCCEE IGTGAYSFVSYSPGSNLTLKRNDSYFAGPSHWSNVTLRFLPDDGARLASLLSNEIDLIET EECCCEEEEEECCCCCEEEEECCCEECCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHH LPADGMARVEASDNLQVINGLSSRFVYLGLDVSRDVSPFVKAADGSDLDKNPLKDERVRR CCCCCEEEEECCCCCCEECCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCCCCHHHHHHH AMLMSINRPAIVDRVMQKNGTVADQFVTQGYAGYSGKVEKVGYDPAAAKALLAEAGYPDG HHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCC FSLTLHGPSGRYVKDAEVLQAVGQMFTRIGIKSKVEVLPWSMYSEAYSKGTYSTYFGSWG EEEEEECCCCCEECHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCCEEEECCCC VNTGETTNPTVALVATRDEKKGTGRYNGGGVSDPKIDEVLAKASSTLDEAARAPLLEELS CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHH TETFNNLWLLPMHYENVVLGAKKTVSYTPRGDKYTLAYDVKPAD HHHHCCEEEEEEECCCEEECCCCEEEECCCCCEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA