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The map label for this gene is ycjP [C]

Identifier: 116248921

GI number: 116248921

Start: 262536

End: 263393

Strand: Reverse

Name: ycjP [C]

Synonym: pRL120251

Alternate gene names: 116248921

Gene position: 263393-262536 (Counterclockwise)

Preceding gene: 116248922

Following gene: 116248920

Centisome position: 30.27

GC content: 56.76

Gene sequence:

>858_bases
ATGAAATCCACTATTGCCTATCGAATGATGATTTGGGCCGGTGTCGTCGTCCTGTTGATCTGGTCTTTGGGGCCGATCTA
CTGGACCATCGCGAGTTCGGTTACGCCCAGCGAAGACTTTTCGACCCGACCGATCAACTTCTTCCCGCAGCACTTTACGC
TCGATCACTACTCGCGGCTGCTTGGCATCAATATTGCGCGGATCGGAGGTGTGGAGGTATTCAAACAGTTCCGGGCCGCG
TTGTTCAATAGCGTGGTGACCTCGATCGCTGCCACGCTGCTTTGCGTCGCAATATCCTCTCTTGGGGCTTACGCGTTCAC
CAGGCTGCAGTTTCCCGGCCGGAAAGTGCTTTTTGTCGCTGTCGTCGCGACGCTGGCTATTCCCGCTTACGCTGTCTTGA
TCCCGCTCTATCAGATCATGATCAAGCTGCATCTCGTCGATACCTATGTGGGCGTCTCGCTGATCTATGTCTCGGCCTTC
CTGCCTCTGTCGCTCTGGCTGTTGCGGAGCGTGTTCGAAGCTCTTCCGATCGCACTGGAAGAGGCTGCGCAACTCGACGG
AGCGGGCCGGCTCTACATCTTCTTCAATATCGTCCTGCCGCTGGCCGGACCGGGTCTGACGGCAGCGGCGATCCTCACCT
TCCTTGGTGCATGGGGACAGTATCTCGTACCGCTCATTTTTTCGCCGCAGGCAACGAAGCCGCTAACGGTTCTGATCCCG
GAATTCGTAACGAAGAACTTCATCGACTACGGGCTCATCACCGCGAGCGGCTCGATCGCCATCGTCATCCCCGCCCTCGT
CGTCATTTTCCTCAACCGTTACCTCGTCAGCGGCCTGTTGGCTGGTTCAGTCAAATAA

Upstream 100 bases:

>100_bases
TCTCGTATGGCATGGCGCTATCGGTGGTGATCACTCTCGTGTCTCTGCTGATTTCGTTGGTCTACGTCCTTCGTGTCTAT
CGCAACACACGGTTCGACTG

Downstream 100 bases:

>100_bases
TCGGAGACTTCATGAACACGACCGAAAAAGTCATTTTCGAGCAATTTCCCTACTGGGAGAAGGCGATCGGCTCGAATTCA
GCTATCGATAGCGCGGAGCT

Product: putative permease component of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MKSTIAYRMMIWAGVVVLLIWSLGPIYWTIASSVTPSEDFSTRPINFFPQHFTLDHYSRLLGINIARIGGVEVFKQFRAA
LFNSVVTSIAATLLCVAISSLGAYAFTRLQFPGRKVLFVAVVATLAIPAYAVLIPLYQIMIKLHLVDTYVGVSLIYVSAF
LPLSLWLLRSVFEALPIALEEAAQLDGAGRLYIFFNIVLPLAGPGLTAAAILTFLGAWGQYLVPLIFSPQATKPLTVLIP
EFVTKNFIDYGLITASGSIAIVIPALVVIFLNRYLVSGLLAGSVK

Sequences:

>Translated_285_residues
MKSTIAYRMMIWAGVVVLLIWSLGPIYWTIASSVTPSEDFSTRPINFFPQHFTLDHYSRLLGINIARIGGVEVFKQFRAA
LFNSVVTSIAATLLCVAISSLGAYAFTRLQFPGRKVLFVAVVATLAIPAYAVLIPLYQIMIKLHLVDTYVGVSLIYVSAF
LPLSLWLLRSVFEALPIALEEAAQLDGAGRLYIFFNIVLPLAGPGLTAAAILTFLGAWGQYLVPLIFSPQATKPLTVLIP
EFVTKNFIDYGLITASGSIAIVIPALVVIFLNRYLVSGLLAGSVK
>Mature_285_residues
MKSTIAYRMMIWAGVVVLLIWSLGPIYWTIASSVTPSEDFSTRPINFFPQHFTLDHYSRLLGINIARIGGVEVFKQFRAA
LFNSVVTSIAATLLCVAISSLGAYAFTRLQFPGRKVLFVAVVATLAIPAYAVLIPLYQIMIKLHLVDTYVGVSLIYVSAF
LPLSLWLLRSVFEALPIALEEAAQLDGAGRLYIFFNIVLPLAGPGLTAAAILTFLGAWGQYLVPLIFSPQATKPLTVLIP
EFVTKNFIDYGLITASGSIAIVIPALVVIFLNRYLVSGLLAGSVK

Specific function: Probably part of a binding-protein-dependent transport system PH1036/38/39. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=287, Percent_Identity=31.0104529616725, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1789860, Length=210, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790464, Length=259, Percent_Identity=29.3436293436293, Blast_Score=88, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31045; Mature: 31045

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]