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The map label for this gene is lsrB [H]

Identifier: 116248861

GI number: 116248861

Start: 196964

End: 197947

Strand: Direct

Name: lsrB [H]

Synonym: pRL120191

Alternate gene names: 116248861

Gene position: 196964-197947 (Clockwise)

Preceding gene: 116248859

Following gene: 116248862

Centisome position: 22.64

GC content: 62.7

Gene sequence:

>984_bases
ATGAGGAGCCTTATCGTAGCGGCATTTGCCGCATCGCTGTCGCTTGCCGGGGCGGTGGTCGCGTTTGCGCAGGACGCGCC
GAAGGTCGGCGTTGTCGTCAAGATCGGCGGCATTCCCTGGTTCAACGCGATGGAAGCCGGCATCAAGGAACAGGGCAAGA
AACTGGGCGTCGATGCCTTCATGATCGGCCCGACCAGCGCCGACCCGGCGCTCCAGGTGCGCGCCATCGAAGATCTGATC
GCCCAGGGCGTCAAGGTTATCGGCGTGGTTCCGAACGATGCCAAGGTGCTCGAGCCCGTGCTCACCAAGGCGCAAGCCGC
CGGCATCAAGGTCATTACGCATGAATCGCCCTCGCAGAAGGGCGCCGACTGGAATTTCGAACTCGCATCGGCCACCGGCT
TCGGTGAAGCGCATGGCAAGCTGCTCGCCGAGAAGATGGGCGGCAAGGGCGAATATGCCGTCTTCGTCGGTTCGCTGACC
GTGCCGCTCCACAACGCCTGGGCGGATGCCGCAATCGCCTATATCAAGGCGAATTACCCGGACATGAAGCTCGTCGGCGA
GCGCTACGGTGTGGCGGAAGACGTCGACAAGAGCCGCTCGACGGCGCTCGATCTCATCGCTGCGCATCCGGATCTGACCG
GCTTCCTCGCCTTCGGCAGCCAGGGTCCGATCGGCGCTGGGCGCGCTATCGAGGAACGCCGCAAGACGGGCAAAATCTTC
GTGCTCGGCCCGTTCTCGCCGGGCCAGGGTCAGAAGCTGATCAAGTCCGACGCGATATCGGGCGGCTTCATGTGGAATCC
GAAACAGGCCGGCGAAGTCTTCGTCACGCTCGCCGATCGCCTGATCAAGGGCGAGAGCGTCAAGGAAGGTGATGACATTC
CAGGTCTCGGCGTGATCAAGCCTGTTGGCAACGACATCATCGTCGATCAACTGCTGCCGATCAACAAGGATACGGTCGAC
GACCTGGCCGCTATGGGCCTCTGA

Upstream 100 bases:

>100_bases
AGGCAAGGGTATTCCCTCGCCAAGAAGCAACCAGGAACAACCTGCCGCAAACCGGCCGGTGGTCGTCGTTCGTATGAGCG
ACCTTTGAGGAGGAGTGAGG

Downstream 100 bases:

>100_bases
AGAGGCCCCCTCCCCGGGTGTCGGGCTGGTCCATGTCGACCGGCCCGGCGTTCGGGAAAGAAAGCGGTATCCGGCCATGG
CCGGACCATTGATCTTTCAT

Product: putative substrate binding component of ABC transporter

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MRSLIVAAFAASLSLAGAVVAFAQDAPKVGVVVKIGGIPWFNAMEAGIKEQGKKLGVDAFMIGPTSADPALQVRAIEDLI
AQGVKVIGVVPNDAKVLEPVLTKAQAAGIKVITHESPSQKGADWNFELASATGFGEAHGKLLAEKMGGKGEYAVFVGSLT
VPLHNAWADAAIAYIKANYPDMKLVGERYGVAEDVDKSRSTALDLIAAHPDLTGFLAFGSQGPIGAGRAIEERRKTGKIF
VLGPFSPGQGQKLIKSDAISGGFMWNPKQAGEVFVTLADRLIKGESVKEGDDIPGLGVIKPVGNDIIVDQLLPINKDTVD
DLAAMGL

Sequences:

>Translated_327_residues
MRSLIVAAFAASLSLAGAVVAFAQDAPKVGVVVKIGGIPWFNAMEAGIKEQGKKLGVDAFMIGPTSADPALQVRAIEDLI
AQGVKVIGVVPNDAKVLEPVLTKAQAAGIKVITHESPSQKGADWNFELASATGFGEAHGKLLAEKMGGKGEYAVFVGSLT
VPLHNAWADAAIAYIKANYPDMKLVGERYGVAEDVDKSRSTALDLIAAHPDLTGFLAFGSQGPIGAGRAIEERRKTGKIF
VLGPFSPGQGQKLIKSDAISGGFMWNPKQAGEVFVTLADRLIKGESVKEGDDIPGLGVIKPVGNDIIVDQLLPINKDTVD
DLAAMGL
>Mature_327_residues
MRSLIVAAFAASLSLAGAVVAFAQDAPKVGVVVKIGGIPWFNAMEAGIKEQGKKLGVDAFMIGPTSADPALQVRAIEDLI
AQGVKVIGVVPNDAKVLEPVLTKAQAAGIKVITHESPSQKGADWNFELASATGFGEAHGKLLAEKMGGKGEYAVFVGSLT
VPLHNAWADAAIAYIKANYPDMKLVGERYGVAEDVDKSRSTALDLIAAHPDLTGFLAFGSQGPIGAGRAIEERRKTGKIF
VLGPFSPGQGQKLIKSDAISGGFMWNPKQAGEVFVTLADRLIKGESVKEGDDIPGLGVIKPVGNDIIVDQLLPINKDTVD
DLAAMGL

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=303, Percent_Identity=27.0627062706271, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790192, Length=289, Percent_Identity=23.1833910034602, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34121; Mature: 34121

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSLIVAAFAASLSLAGAVVAFAQDAPKVGVVVKIGGIPWFNAMEAGIKEQGKKLGVDAF
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCHHCCCEEE
MIGPTSADPALQVRAIEDLIAQGVKVIGVVPNDAKVLEPVLTKAQAAGIKVITHESPSQK
EECCCCCCCCEEHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCC
GADWNFELASATGFGEAHGKLLAEKMGGKGEYAVFVGSLTVPLHNAWADAAIAYIKANYP
CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEEEEECHHHHHHHEEEEEECCCC
DMKLVGERYGVAEDVDKSRSTALDLIAAHPDLTGFLAFGSQGPIGAGRAIEERRKTGKIF
CCEEHHHHCCCHHHHHHHHHHHEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHCCEEE
VLGPFSPGQGQKLIKSDAISGGFMWNPKQAGEVFVTLADRLIKGESVKEGDDIPGLGVIK
EEECCCCCCCCHHHHHHCCCCCEEECCCCCCHHHHEEHHHHHCCCCCCCCCCCCCCEEEC
PVGNDIIVDQLLPINKDTVDDLAAMGL
CCCCCEEEECCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MRSLIVAAFAASLSLAGAVVAFAQDAPKVGVVVKIGGIPWFNAMEAGIKEQGKKLGVDAF
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCHHCCCEEE
MIGPTSADPALQVRAIEDLIAQGVKVIGVVPNDAKVLEPVLTKAQAAGIKVITHESPSQK
EECCCCCCCCEEHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCC
GADWNFELASATGFGEAHGKLLAEKMGGKGEYAVFVGSLTVPLHNAWADAAIAYIKANYP
CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEEEEECHHHHHHHEEEEEECCCC
DMKLVGERYGVAEDVDKSRSTALDLIAAHPDLTGFLAFGSQGPIGAGRAIEERRKTGKIF
CCEEHHHHCCCHHHHHHHHHHHEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHCCEEE
VLGPFSPGQGQKLIKSDAISGGFMWNPKQAGEVFVTLADRLIKGESVKEGDDIPGLGVIK
EEECCCCCCCCHHHHHHCCCCCEEECCCCCCHHHHEEHHHHHCCCCCCCCCCCCCCEEEC
PVGNDIIVDQLLPINKDTVDDLAAMGL
CCCCCEEEECCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA