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The map label for this gene is glcD [C]

Identifier: 116248851

GI number: 116248851

Start: 184380

End: 185792

Strand: Reverse

Name: glcD [C]

Synonym: pRL120180

Alternate gene names: 116248851

Gene position: 185792-184380 (Counterclockwise)

Preceding gene: 116248854

Following gene: 116248850

Centisome position: 21.35

GC content: 62.42

Gene sequence:

>1413_bases
GTGCCGTCTGACCGGTTGAGCCGTCTTCTCGCCCGCCTGGAAAACCGACTTGATGCAGCCGCAATCTTGAGCGGCGATGC
CGTCCCCGATGCCTATTGCGCCGACGCAGCGGCGCAAGGCCAGCGGCCACTTGCCGTTCTGCGGCCCCGCAATTGCGCAG
ATGTTTCCGCCATTCTTTCTGCCGCCAATGATCTTGGCCAGCCGCTTGTCGTCCAGGGCGGGCGTACAGGTCTTTCAGGC
GGTTCTCGGCCGGTCGCCGACGAAGTGTCGCTGTCGCTGGAGCGGATGAGCAGCATCGAATCCATCGACACGGTGGCACA
GACGCTGATCGCCGGCGCGGGCACTCCGATGCAGGTCGTGCAGCAGGGGGCAAGCGATGCGGGCCTGTTCTTCGGTGTCG
ATATCGGCGCACGCGGCAGCGCCACGGTCGGCGGCAATATCGGCACCAATGCCGGCGGCATTCGCGTGCTGCGTTACGGC
ATGTACCGGGCGCAGGTCATGGGTCTCGAAGCCGTGCTCGCAGACGGAACGGTGCTGACCTCGCTCAAGGGCCTGCCGAA
GGACAATTCCGGCTACGACCTCAATCAACTGTTCATCGGTAGCGAAGGCACGCTCGGCATCATTACCCGCGCCTGTTTGA
AACTGCATCCCAAGCCGAAGATTGAGCGCAATGCGTTCTTGGCGCTTCCGTCGCTGGCCGCCGCGCAGGATCTGTTATCG
AAACTGCGGGTCGAGCTTGCCGGGCTCCTTTCCGCTTTCGAAGTGATTTTCCCGAATGTCTACGAGGGCACCGTCGCGCA
TATGGGCATCCGCCCGCCGGTGGCGCCTCGTGCCGGCATGTATGCCATGGTTGAGATCCAGGGGCAGGCGCCGGATCAGG
ACAATGAGCGTTTCGAGACCGTGCTGGCTGCTGCGCTCGAGGACGGGCTGGCGAGCGACGTCGTGCTCTCCAATTCCGTT
CGTGAATTTCAGACACTCTGGGCGATCCGGGACGGCATCAACGGATTTCTCACCGCCTGTGGTCAAAACGCCGGTTACGA
TATTTCAGTGCCACTTGGCCGCATGCAGGAGTTTCTCGACGCAACGGCCCAGTCGATATCGATGGTGGATCCAGGCGCGG
TGTCGTTCATCTTCGGTCATCTCGGCGATGGAAATCTGCATTATTGCATGGTCACGAGCCGCGAAAAGGACGTCGCAAAG
GCGGTATTTTCCGGGATCGAGCAGGTCGGCGGCGGCGTATCCGCCGAGCACGGCATCGGCACCGACAAGGTGGGCTATCT
GAACTATGCCCGCAGCGAGGCCGAGATCGCCACCATGCGCCGGCTGAAAGCCGCTTTTGATCCGAACGCCATCCTCAATC
GCGGGCGAGTCTTTGCGGCGCCGGTTTCGGTTGCACAGATGGAGCGGGCATAG

Upstream 100 bases:

>100_bases
CCTCACCCCCCGGATTAAGGGGTAAAGGAATGGGCGCAATCGCATTTGGCCGACCCTGGGGTGCACGGCCGGACCGTAGA
GTTTCCAGGGGAGGGCGCCC

Downstream 100 bases:

>100_bases
ATGTCGATCCACACCCAACCGGATATCCCGGAACCGAAAATCAGCCTGGACGACCGTTACACCCTCGAAAGGGGTCGTAT
CCTCGTCTCCGGAACGCAGG

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MPSDRLSRLLARLENRLDAAAILSGDAVPDAYCADAAAQGQRPLAVLRPRNCADVSAILSAANDLGQPLVVQGGRTGLSG
GSRPVADEVSLSLERMSSIESIDTVAQTLIAGAGTPMQVVQQGASDAGLFFGVDIGARGSATVGGNIGTNAGGIRVLRYG
MYRAQVMGLEAVLADGTVLTSLKGLPKDNSGYDLNQLFIGSEGTLGIITRACLKLHPKPKIERNAFLALPSLAAAQDLLS
KLRVELAGLLSAFEVIFPNVYEGTVAHMGIRPPVAPRAGMYAMVEIQGQAPDQDNERFETVLAAALEDGLASDVVLSNSV
REFQTLWAIRDGINGFLTACGQNAGYDISVPLGRMQEFLDATAQSISMVDPGAVSFIFGHLGDGNLHYCMVTSREKDVAK
AVFSGIEQVGGGVSAEHGIGTDKVGYLNYARSEAEIATMRRLKAAFDPNAILNRGRVFAAPVSVAQMERA

Sequences:

>Translated_470_residues
MPSDRLSRLLARLENRLDAAAILSGDAVPDAYCADAAAQGQRPLAVLRPRNCADVSAILSAANDLGQPLVVQGGRTGLSG
GSRPVADEVSLSLERMSSIESIDTVAQTLIAGAGTPMQVVQQGASDAGLFFGVDIGARGSATVGGNIGTNAGGIRVLRYG
MYRAQVMGLEAVLADGTVLTSLKGLPKDNSGYDLNQLFIGSEGTLGIITRACLKLHPKPKIERNAFLALPSLAAAQDLLS
KLRVELAGLLSAFEVIFPNVYEGTVAHMGIRPPVAPRAGMYAMVEIQGQAPDQDNERFETVLAAALEDGLASDVVLSNSV
REFQTLWAIRDGINGFLTACGQNAGYDISVPLGRMQEFLDATAQSISMVDPGAVSFIFGHLGDGNLHYCMVTSREKDVAK
AVFSGIEQVGGGVSAEHGIGTDKVGYLNYARSEAEIATMRRLKAAFDPNAILNRGRVFAAPVSVAQMERA
>Mature_469_residues
PSDRLSRLLARLENRLDAAAILSGDAVPDAYCADAAAQGQRPLAVLRPRNCADVSAILSAANDLGQPLVVQGGRTGLSGG
SRPVADEVSLSLERMSSIESIDTVAQTLIAGAGTPMQVVQQGASDAGLFFGVDIGARGSATVGGNIGTNAGGIRVLRYGM
YRAQVMGLEAVLADGTVLTSLKGLPKDNSGYDLNQLFIGSEGTLGIITRACLKLHPKPKIERNAFLALPSLAAAQDLLSK
LRVELAGLLSAFEVIFPNVYEGTVAHMGIRPPVAPRAGMYAMVEIQGQAPDQDNERFETVLAAALEDGLASDVVLSNSVR
EFQTLWAIRDGINGFLTACGQNAGYDISVPLGRMQEFLDATAQSISMVDPGAVSFIFGHLGDGNLHYCMVTSREKDVAKA
VFSGIEQVGGGVSAEHGIGTDKVGYLNYARSEAEIATMRRLKAAFDPNAILNRGRVFAAPVSVAQMERA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=414, Percent_Identity=38.1642512077295, Blast_Score=263, Evalue=3e-70,
Organism=Homo sapiens, GI37595756, Length=435, Percent_Identity=31.0344827586207, Blast_Score=165, Evalue=9e-41,
Organism=Homo sapiens, GI37595754, Length=466, Percent_Identity=28.9699570815451, Blast_Score=155, Evalue=5e-38,
Organism=Homo sapiens, GI4501993, Length=194, Percent_Identity=30.4123711340206, Blast_Score=83, Evalue=7e-16,
Organism=Escherichia coli, GI1789351, Length=469, Percent_Identity=30.2771855010661, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI48994907, Length=450, Percent_Identity=25.5555555555556, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI48994914, Length=197, Percent_Identity=28.4263959390863, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17534361, Length=452, Percent_Identity=33.1858407079646, Blast_Score=231, Evalue=5e-61,
Organism=Caenorhabditis elegans, GI71992373, Length=447, Percent_Identity=30.2013422818792, Blast_Score=161, Evalue=8e-40,
Organism=Caenorhabditis elegans, GI71992381, Length=447, Percent_Identity=29.9776286353468, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI71992392, Length=364, Percent_Identity=31.043956043956, Blast_Score=139, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI17556096, Length=460, Percent_Identity=22.3913043478261, Blast_Score=76, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6320023, Length=430, Percent_Identity=37.6744186046512, Blast_Score=282, Evalue=6e-77,
Organism=Saccharomyces cerevisiae, GI6320764, Length=459, Percent_Identity=33.7690631808279, Blast_Score=250, Evalue=3e-67,
Organism=Saccharomyces cerevisiae, GI6320027, Length=465, Percent_Identity=29.0322580645161, Blast_Score=169, Evalue=9e-43,
Organism=Drosophila melanogaster, GI18921117, Length=454, Percent_Identity=33.7004405286344, Blast_Score=241, Evalue=1e-63,
Organism=Drosophila melanogaster, GI24639277, Length=454, Percent_Identity=33.7004405286344, Blast_Score=241, Evalue=1e-63,
Organism=Drosophila melanogaster, GI24639275, Length=454, Percent_Identity=33.7004405286344, Blast_Score=241, Evalue=1e-63,
Organism=Drosophila melanogaster, GI24653753, Length=220, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 49333; Mature: 49202

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSDRLSRLLARLENRLDAAAILSGDAVPDAYCADAAAQGQRPLAVLRPRNCADVSAILS
CCHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHH
AANDLGQPLVVQGGRTGLSGGSRPVADEVSLSLERMSSIESIDTVAQTLIAGAGTPMQVV
HHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
QQGASDAGLFFGVDIGARGSATVGGNIGTNAGGIRVLRYGMYRAQVMGLEAVLADGTVLT
HCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
SLKGLPKDNSGYDLNQLFIGSEGTLGIITRACLKLHPKPKIERNAFLALPSLAAAQDLLS
HHCCCCCCCCCCCHHEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHH
KLRVELAGLLSAFEVIFPNVYEGTVAHMGIRPPVAPRAGMYAMVEIQGQAPDQDNERFET
HHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHH
VLAAALEDGLASDVVLSNSVREFQTLWAIRDGINGFLTACGQNAGYDISVPLGRMQEFLD
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCEEECCHHHHHHHHH
ATAQSISMVDPGAVSFIFGHLGDGNLHYCMVTSREKDVAKAVFSGIEQVGGGVSAEHGIG
HHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC
TDKVGYLNYARSEAEIATMRRLKAAFDPNAILNRGRVFAAPVSVAQMERA
CCCCCHHHHHCCHHHHHHHHHHHHHCCCHHHHHCCEEEECCCHHHHHCCC
>Mature Secondary Structure 
PSDRLSRLLARLENRLDAAAILSGDAVPDAYCADAAAQGQRPLAVLRPRNCADVSAILS
CHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHH
AANDLGQPLVVQGGRTGLSGGSRPVADEVSLSLERMSSIESIDTVAQTLIAGAGTPMQVV
HHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
QQGASDAGLFFGVDIGARGSATVGGNIGTNAGGIRVLRYGMYRAQVMGLEAVLADGTVLT
HCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
SLKGLPKDNSGYDLNQLFIGSEGTLGIITRACLKLHPKPKIERNAFLALPSLAAAQDLLS
HHCCCCCCCCCCCHHEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHH
KLRVELAGLLSAFEVIFPNVYEGTVAHMGIRPPVAPRAGMYAMVEIQGQAPDQDNERFET
HHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHH
VLAAALEDGLASDVVLSNSVREFQTLWAIRDGINGFLTACGQNAGYDISVPLGRMQEFLD
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCEEECCHHHHHHHHH
ATAQSISMVDPGAVSFIFGHLGDGNLHYCMVTSREKDVAKAVFSGIEQVGGGVSAEHGIG
HHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC
TDKVGYLNYARSEAEIATMRRLKAAFDPNAILNRGRVFAAPVSVAQMERA
CCCCCHHHHHCCHHHHHHHHHHHHHCCCHHHHHCCEEEECCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]