| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is 116248809
Identifier: 116248809
GI number: 116248809
Start: 135737
End: 136699
Strand: Reverse
Name: 116248809
Synonym: pRL120135
Alternate gene names: NA
Gene position: 136699-135737 (Counterclockwise)
Preceding gene: 116248810
Following gene: 116248808
Centisome position: 15.71
GC content: 61.27
Gene sequence:
>963_bases ATGGCGTGTTATGTCGACGAAGCGACCAAGAGCAAGATCATCGCTTACAATGCCGAATTCCATAAGGTGACGAAGAGCCC CTATGGCAGCGACGACGAGATCGGCATGCTGAACCTGATCGACGCCAAGTCGCGTTCGGCGATCATCGGCCGCACCGATG CCTCGAAGGTCTTCGACCTCTCGGTCGACCATTTCGTCGGCATGCCAGGCTGGTTCGGCGCCGGCGACCAGCCCTACCAG ATCTGGATGACCCACACGCCGCAGGGCGAGATCGTCGCCAACACCATGGGCGTGACGCGCCAACAGAACGAACTCGTCGC CTATTCCGGCGACAGTATCTCGATGTACACCCATTGCGGCACGCATATCGATACGTTCAACCACTTTGGCTACAATGGCG AGATCTTCAATGGTTTCACGGCGCGGGATCACCTCGGCAGCCGCGCCTGGGATATTTGCGGCCCGGAAAAATATCCGCCG ATTTTCGCGCGCGGCATTCTCCTCGATATCGCGGCGATGCACGGCGTCGACACGCTGCCGCCGAGCCACCCGATCGGCAA GGCCGACATCGAGGACTGCCTGAAGAAGCAGGGGCTGAAGATCCTGCCCGGCGACGTGGTGCTGCTGCGCACCGGCCAGA TGCTGCGATGGCCGGACATCGCCTTCACCAAGAATACGCCTGGCCTCAACCGCGAAGGCGCGGAATATATCGCCAAGCAC GGCGCGGTCATGATCGGCGCCGACAACCTGACGCTGGAGCAGACGCCGTCGGCGCACGAGCTCAACTTCTTCCCCGTCCA TACCTATCTGCTGGCGGAAGCGGGCGTCCCGATCCTCGAGATGGCCTATCTTGAAGAGTTGGCTGGCGACAAGCTCTACG AATTCGCCTTTTTTGGCGCATGCATCAAGTTGCGCGGAGCCACCGGTGCACCGATGCGGCCGGTGGCGATGCCGCTGAAC TGA
Upstream 100 bases:
>100_bases GTCGGTGGCGCTCGTCGCCGAACCGGTCATTCGCGGCGAGACAATTTGAAGGCAGTCGCTCCGGTGGCTGCGAACATGAA CAAGGAGAGTTGCAATGTGC
Downstream 100 bases:
>100_bases ACGCAAGGCGTATGCGGGGAAGCGAAAATGAAAACAGTGGACGGCAGGGCGGTCTGCAGTCGGTTTCAAGAGGAACATCC AACCCTGATGCCATTGCACC
Product: putative cyclase
Products: NA
Alternate protein names: Cyclase Family Protein; Polyketide Cyclase; Yclase SCIF3.09c; Metal-Dependent Hydrolase; LOW QUALITY PROTEIN Cyclase; Exported Cyclase; Cyclase Family; Metal-Dependent Cyclase Family Protein
Number of amino acids: Translated: 320; Mature: 319
Protein sequence:
>320_residues MACYVDEATKSKIIAYNAEFHKVTKSPYGSDDEIGMLNLIDAKSRSAIIGRTDASKVFDLSVDHFVGMPGWFGAGDQPYQ IWMTHTPQGEIVANTMGVTRQQNELVAYSGDSISMYTHCGTHIDTFNHFGYNGEIFNGFTARDHLGSRAWDICGPEKYPP IFARGILLDIAAMHGVDTLPPSHPIGKADIEDCLKKQGLKILPGDVVLLRTGQMLRWPDIAFTKNTPGLNREGAEYIAKH GAVMIGADNLTLEQTPSAHELNFFPVHTYLLAEAGVPILEMAYLEELAGDKLYEFAFFGACIKLRGATGAPMRPVAMPLN
Sequences:
>Translated_320_residues MACYVDEATKSKIIAYNAEFHKVTKSPYGSDDEIGMLNLIDAKSRSAIIGRTDASKVFDLSVDHFVGMPGWFGAGDQPYQ IWMTHTPQGEIVANTMGVTRQQNELVAYSGDSISMYTHCGTHIDTFNHFGYNGEIFNGFTARDHLGSRAWDICGPEKYPP IFARGILLDIAAMHGVDTLPPSHPIGKADIEDCLKKQGLKILPGDVVLLRTGQMLRWPDIAFTKNTPGLNREGAEYIAKH GAVMIGADNLTLEQTPSAHELNFFPVHTYLLAEAGVPILEMAYLEELAGDKLYEFAFFGACIKLRGATGAPMRPVAMPLN >Mature_319_residues ACYVDEATKSKIIAYNAEFHKVTKSPYGSDDEIGMLNLIDAKSRSAIIGRTDASKVFDLSVDHFVGMPGWFGAGDQPYQI WMTHTPQGEIVANTMGVTRQQNELVAYSGDSISMYTHCGTHIDTFNHFGYNGEIFNGFTARDHLGSRAWDICGPEKYPPI FARGILLDIAAMHGVDTLPPSHPIGKADIEDCLKKQGLKILPGDVVLLRTGQMLRWPDIAFTKNTPGLNREGAEYIAKHG AVMIGADNLTLEQTPSAHELNFFPVHTYLLAEAGVPILEMAYLEELAGDKLYEFAFFGACIKLRGATGAPMRPVAMPLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35098; Mature: 34967
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MACYVDEATKSKIIAYNAEFHKVTKSPYGSDDEIGMLNLIDAKSRSAIIGRTDASKVFDL CEEECCCCCCCEEEEECCHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEE SVDHFVGMPGWFGAGDQPYQIWMTHTPQGEIVANTMGVTRQQNELVAYSGDSISMYTHCG CHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCEEEEECCCEEEEEECC THIDTFNHFGYNGEIFNGFTARDHLGSRAWDICGPEKYPPIFARGILLDIAAMHGVDTLP CCHHHHHHCCCCCEEECCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC PSHPIGKADIEDCLKKQGLKILPGDVVLLRTGQMLRWPDIAFTKNTPGLNREGAEYIAKH CCCCCCHHHHHHHHHHCCCEECCCCEEEEECCCEEECCCEEEECCCCCCCCCHHHHHHHC GAVMIGADNLTLEQTPSAHELNFFPVHTYLLAEAGVPILEMAYLEELAGDKLYEFAFFGA CEEEEECCCEEEECCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHEE CIKLRGATGAPMRPVAMPLN EEEEECCCCCCCCCEECCCC >Mature Secondary Structure ACYVDEATKSKIIAYNAEFHKVTKSPYGSDDEIGMLNLIDAKSRSAIIGRTDASKVFDL EEECCCCCCCEEEEECCHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEE SVDHFVGMPGWFGAGDQPYQIWMTHTPQGEIVANTMGVTRQQNELVAYSGDSISMYTHCG CHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCEEEEECCCEEEEEECC THIDTFNHFGYNGEIFNGFTARDHLGSRAWDICGPEKYPPIFARGILLDIAAMHGVDTLP CCHHHHHHCCCCCEEECCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC PSHPIGKADIEDCLKKQGLKILPGDVVLLRTGQMLRWPDIAFTKNTPGLNREGAEYIAKH CCCCCCHHHHHHHHHHCCCEECCCCEEEEECCCEEECCCEEEECCCCCCCCCHHHHHHHC GAVMIGADNLTLEQTPSAHELNFFPVHTYLLAEAGVPILEMAYLEELAGDKLYEFAFFGA CEEEEECCCEEEECCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHEE CIKLRGATGAPMRPVAMPLN EEEEECCCCCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA