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The map label for this gene is yliC [C]

Identifier: 116248804

GI number: 116248804

Start: 130459

End: 131472

Strand: Reverse

Name: yliC [C]

Synonym: pRL120130

Alternate gene names: 116248804

Gene position: 131472-130459 (Counterclockwise)

Preceding gene: 116248805

Following gene: 116248803

Centisome position: 15.11

GC content: 59.17

Gene sequence:

>1014_bases
ATGGCGACATTTCTCCTGAAACGCTTGGCGATGATGTTCGTGACGATGCTTTGCGCCTCGTTTCTCGTCTTCGCCGTCTG
TGAGTTCACTCCCGGCAGCGTGGCCCGCAAGTCGCTCGGTCCTTTCGCCACCCAGCAGCAGGTCGACCTGCTGTCGGAGA
AATTGAAGGCCAATGATCCGCTGCTCGTGCGCTACGGTCGCTGGCTCGGTGTGCTAGTCGGCGCAATTCCCGATCCCCTT
CAGGATCCGACCACCGGGTTGAACTTCAAGGATCCGCGTGGCGCGCAGTATTTCGGCAACTTCGGCTATTCGACCCTGAA
CAAGCTGCCCGTCAACGATGTCATATGGGATCGCCTCGGCAATACCTCGATCCTCGCCGGACTGGCGTTCCTGCTGATCG
TCCCGCTGTCGATCATTTTCGGCATCCTGTCGGGGTTGAAAGAGGGTGGGGTACTGGACCGGACGCTATCGGTCATCTGT
ATCACCTTCACGTCTATTCCGGAGTTCGCGTCAGGGGTTTTCCTGGTGACGCTTTTCGTGATCCTCTGGCCGATCCTGCC
AGGTACCAGCCCTCTCAACAGCGATGGCGGCTGGGCGGTGCCCTACCAGTTTGTCCTGCCGGTTGCCGTGCTGGTCATCT
ATGACTTCGGCTATGTTGCCCGAATGATCCGCGTCTCGATGATCGGCGTCATGGAGCGACCTTATATCCGCACCGCAATC
CTCAAGGGCATGAGCACGCGCCGCATGGTCCTAGGGCACGCACTCCGCAATGCGATGATCGCGCCCTTCACGGTGCTCCT
GTTGCAAATAAACTTCCTGATCAGCGGCGTCGTCGTCACGGAGCTCGTCTTTGCTTATCCGGGCTTCGGCCGCCTGATCC
TCGATGCAAGTTTGTTCGGCGACATCGCAACGCTCGAAGCCGCCACGCTGATCACCGTCGCTATTGCCGTTGTTACGCAG
CTGCTTGGCGACCTTGGCTACATGCTGCTCGATCCACGCATCCGGGTGAGGTAA

Upstream 100 bases:

>100_bases
CTTCGCGCATCAGTACGCGATCTCGGCGTAACCTCCCGGCTGGCGCCTGGCCGCGTTCGCGCGGTCGGGTGCTAGGCCCA
GTCAGCGGATTCCTCCGGCT

Downstream 100 bases:

>100_bases
ATCATGGCTGTTCAAGACAACATCATCGGAGCAGTCGCCGCACCGCCAAAGCGTGCTGCAAGGCCCAACTGGATGCGCAT
CTTTCATTCGCGCACGGCCG

Product: putative permease component of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MATFLLKRLAMMFVTMLCASFLVFAVCEFTPGSVARKSLGPFATQQQVDLLSEKLKANDPLLVRYGRWLGVLVGAIPDPL
QDPTTGLNFKDPRGAQYFGNFGYSTLNKLPVNDVIWDRLGNTSILAGLAFLLIVPLSIIFGILSGLKEGGVLDRTLSVIC
ITFTSIPEFASGVFLVTLFVILWPILPGTSPLNSDGGWAVPYQFVLPVAVLVIYDFGYVARMIRVSMIGVMERPYIRTAI
LKGMSTRRMVLGHALRNAMIAPFTVLLLQINFLISGVVVTELVFAYPGFGRLILDASLFGDIATLEAATLITVAIAVVTQ
LLGDLGYMLLDPRIRVR

Sequences:

>Translated_337_residues
MATFLLKRLAMMFVTMLCASFLVFAVCEFTPGSVARKSLGPFATQQQVDLLSEKLKANDPLLVRYGRWLGVLVGAIPDPL
QDPTTGLNFKDPRGAQYFGNFGYSTLNKLPVNDVIWDRLGNTSILAGLAFLLIVPLSIIFGILSGLKEGGVLDRTLSVIC
ITFTSIPEFASGVFLVTLFVILWPILPGTSPLNSDGGWAVPYQFVLPVAVLVIYDFGYVARMIRVSMIGVMERPYIRTAI
LKGMSTRRMVLGHALRNAMIAPFTVLLLQINFLISGVVVTELVFAYPGFGRLILDASLFGDIATLEAATLITVAIAVVTQ
LLGDLGYMLLDPRIRVR
>Mature_336_residues
ATFLLKRLAMMFVTMLCASFLVFAVCEFTPGSVARKSLGPFATQQQVDLLSEKLKANDPLLVRYGRWLGVLVGAIPDPLQ
DPTTGLNFKDPRGAQYFGNFGYSTLNKLPVNDVIWDRLGNTSILAGLAFLLIVPLSIIFGILSGLKEGGVLDRTLSVICI
TFTSIPEFASGVFLVTLFVILWPILPGTSPLNSDGGWAVPYQFVLPVAVLVIYDFGYVARMIRVSMIGVMERPYIRTAIL
KGMSTRRMVLGHALRNAMIAPFTVLLLQINFLISGVVVTELVFAYPGFGRLILDASLFGDIATLEAATLITVAIAVVTQL
LGDLGYMLLDPRIRVR

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=337, Percent_Identity=29.3768545994065, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1789965, Length=368, Percent_Identity=27.7173913043478, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1787497, Length=340, Percent_Identity=27.3529411764706, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1789888, Length=339, Percent_Identity=28.3185840707965, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1787761, Length=319, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1787550, Length=258, Percent_Identity=25.1937984496124, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788504, Length=368, Percent_Identity=24.4565217391304, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36799; Mature: 36667

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATFLLKRLAMMFVTMLCASFLVFAVCEFTPGSVARKSLGPFATQQQVDLLSEKLKANDP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCC
LLVRYGRWLGVLVGAIPDPLQDPTTGLNFKDPRGAQYFGNFGYSTLNKLPVNDVIWDRLG
EEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHCCCCHHHHHHHCC
NTSILAGLAFLLIVPLSIIFGILSGLKEGGVLDRTLSVICITFTSIPEFASGVFLVTLFV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
ILWPILPGTSPLNSDGGWAVPYQFVLPVAVLVIYDFGYVARMIRVSMIGVMERPYIRTAI
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LKGMSTRRMVLGHALRNAMIAPFTVLLLQINFLISGVVVTELVFAYPGFGRLILDASLFG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
DIATLEAATLITVAIAVVTQLLGDLGYMLLDPRIRVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ATFLLKRLAMMFVTMLCASFLVFAVCEFTPGSVARKSLGPFATQQQVDLLSEKLKANDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCC
LLVRYGRWLGVLVGAIPDPLQDPTTGLNFKDPRGAQYFGNFGYSTLNKLPVNDVIWDRLG
EEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHCCCCHHHHHHHCC
NTSILAGLAFLLIVPLSIIFGILSGLKEGGVLDRTLSVICITFTSIPEFASGVFLVTLFV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
ILWPILPGTSPLNSDGGWAVPYQFVLPVAVLVIYDFGYVARMIRVSMIGVMERPYIRTAI
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LKGMSTRRMVLGHALRNAMIAPFTVLLLQINFLISGVVVTELVFAYPGFGRLILDASLFG
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
DIATLEAATLITVAIAVVTQLLGDLGYMLLDPRIRVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]