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The map label for this gene is ycaD [H]

Identifier: 116248801

GI number: 116248801

Start: 126231

End: 127493

Strand: Reverse

Name: ycaD [H]

Synonym: pRL120127

Alternate gene names: 116248801

Gene position: 127493-126231 (Counterclockwise)

Preceding gene: 116248802

Following gene: 116248800

Centisome position: 14.65

GC content: 60.1

Gene sequence:

>1263_bases
ATGATGCGCGATCCCGATAGGACGATTGGTGACTTCTGGCGGAAAGCCGCGGGGCTTCGTGCAATCCTGCATGTCATGGC
GAGCATCTGCATCGTCGCGACAGGCAATTCACTTTTGACGACCACGGTTTCTCTTCACCTCAGCGACCCCGCAATCGATC
CCCACGTTGTCCAGTTGTTGCTGACGGCGTTTCCCATAGGCTTCCTAGCCGGCTGCCTGTCAGCCCGTTTCATGGTCGTC
CGCTTCGGACATGAGCGCGCTTTCCTGGCCGTGGCATTGCTCGCCGCTTTTGGCGCCTGCGGCTACATGCTGACGGAAGT
CGCTCCGGTCTGGTTCTGCCTGCGTCTGATAAACGGCTTTTCCATCGCGACGCTGTTCGTCGTTTCCGAAAGCTGGATCA
ATCTTTACGCTGACCAGAAGAACCGCGGAGCCTATTTCTCGCTCTATATGCTGATGACGTCGCTGGCGACGCTGTTTGCG
CAATTGCTTGTCGAAGCGGCCGGAGCGACCTCTCCCCATCTCTTTCAGATCGCGCTCGGCGTGATCCTGCTTGGACTGAT
CTACGCCCGCTTTGTTGGTGGACCTTGGCCTGTCTTGCGGCTGCCGCTGGCGGTGACGGTCGACGCCGGTAACGCCCACT
CCGGGCATCGGTATGGCATTTGGCGGCTCGCTGCTCTAGCGCCGGTGGCTGTCGTCTGCGTCTTTCAAGCGGGCATGACG
AATATGAATGTCTATACGATGACGCCGATCTATGCTGAGCGGGTGCATCTCGACGCGGCGGTCGCCGTGACGCTGGTAAC
CGCCTTCAGCCTGGGCGGCATGCTCGCTCAGGCGCCAGTCGGATGGTTGTCTGATCGTATGGACCGGCGCGTTCTACTTC
TCCTTCAGGGATTGGCGGGAACAGGACTGTGCGCAGCAATTGCCTGGCCCGGAAGCTACCCGCAGATGCTTCTCTACGGT
CTGTTTTTCGCCTACGGCGCGATCGCGCTGACAATTTACCCGGTCGGCATCGCTTACGCCAACTCACAGCTCGACAGCCG
CCATATGGTCTCGGCATCGGGTAGCCTGCTGCTCCTCTATTCGATCGGCAACATCATGACACCTGGGCTCGCCGCCCAGC
TGATGGAGCTGTTTGCACCGCAGGCACTCTTCCTTCTGCTCGGGAGCGGAGCGTTCCTGGTTGCTGCCACTGCCTGCTTC
AATCTCCTGCGCCGTCCGATCGGCGCCGCCAAGCCTTGCTTCACTACGGGAGGAAACGAATGA

Upstream 100 bases:

>100_bases
CGCTGCGCAAGATGTCCGAGACGCATGAGATTCTCTGCCACATCGATCAAGCAGATCTCGCGGCTCGGCCATCCGTTCTT
GTTTCCGCCGATAAGGCATA

Downstream 100 bases:

>100_bases
CGCTCGCTGAGCCTTATGACCTCGTGATCCGTCGGGGCCGTGTGGTGCTGCCGGATGCAACCAAGCAAATCGATATCGGC
GTTCGCGACGGCGTGATTGC

Product: MFS family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MMRDPDRTIGDFWRKAAGLRAILHVMASICIVATGNSLLTTTVSLHLSDPAIDPHVVQLLLTAFPIGFLAGCLSARFMVV
RFGHERAFLAVALLAAFGACGYMLTEVAPVWFCLRLINGFSIATLFVVSESWINLYADQKNRGAYFSLYMLMTSLATLFA
QLLVEAAGATSPHLFQIALGVILLGLIYARFVGGPWPVLRLPLAVTVDAGNAHSGHRYGIWRLAALAPVAVVCVFQAGMT
NMNVYTMTPIYAERVHLDAAVAVTLVTAFSLGGMLAQAPVGWLSDRMDRRVLLLLQGLAGTGLCAAIAWPGSYPQMLLYG
LFFAYGAIALTIYPVGIAYANSQLDSRHMVSASGSLLLLYSIGNIMTPGLAAQLMELFAPQALFLLLGSGAFLVAATACF
NLLRRPIGAAKPCFTTGGNE

Sequences:

>Translated_420_residues
MMRDPDRTIGDFWRKAAGLRAILHVMASICIVATGNSLLTTTVSLHLSDPAIDPHVVQLLLTAFPIGFLAGCLSARFMVV
RFGHERAFLAVALLAAFGACGYMLTEVAPVWFCLRLINGFSIATLFVVSESWINLYADQKNRGAYFSLYMLMTSLATLFA
QLLVEAAGATSPHLFQIALGVILLGLIYARFVGGPWPVLRLPLAVTVDAGNAHSGHRYGIWRLAALAPVAVVCVFQAGMT
NMNVYTMTPIYAERVHLDAAVAVTLVTAFSLGGMLAQAPVGWLSDRMDRRVLLLLQGLAGTGLCAAIAWPGSYPQMLLYG
LFFAYGAIALTIYPVGIAYANSQLDSRHMVSASGSLLLLYSIGNIMTPGLAAQLMELFAPQALFLLLGSGAFLVAATACF
NLLRRPIGAAKPCFTTGGNE
>Mature_420_residues
MMRDPDRTIGDFWRKAAGLRAILHVMASICIVATGNSLLTTTVSLHLSDPAIDPHVVQLLLTAFPIGFLAGCLSARFMVV
RFGHERAFLAVALLAAFGACGYMLTEVAPVWFCLRLINGFSIATLFVVSESWINLYADQKNRGAYFSLYMLMTSLATLFA
QLLVEAAGATSPHLFQIALGVILLGLIYARFVGGPWPVLRLPLAVTVDAGNAHSGHRYGIWRLAALAPVAVVCVFQAGMT
NMNVYTMTPIYAERVHLDAAVAVTLVTAFSLGGMLAQAPVGWLSDRMDRRVLLLLQGLAGTGLCAAIAWPGSYPQMLLYG
LFFAYGAIALTIYPVGIAYANSQLDSRHMVSASGSLLLLYSIGNIMTPGLAAQLMELFAPQALFLLLGSGAFLVAATACF
NLLRRPIGAAKPCFTTGGNE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=358, Percent_Identity=24.5810055865922, Blast_Score=96, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 44930; Mature: 44930

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRDPDRTIGDFWRKAAGLRAILHVMASICIVATGNSLLTTTVSLHLSDPAIDPHVVQLL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCHHHHHHH
LTAFPIGFLAGCLSARFMVVRFGHERAFLAVALLAAFGACGYMLTEVAPVWFCLRLINGF
HHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SIATLFVVSESWINLYADQKNRGAYFSLYMLMTSLATLFAQLLVEAAGATSPHLFQIALG
HHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
VILLGLIYARFVGGPWPVLRLPLAVTVDAGNAHSGHRYGIWRLAALAPVAVVCVFQAGMT
HHHHHHHHHHHCCCCCHHHEECEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
NMNVYTMTPIYAERVHLDAAVAVTLVTAFSLGGMLAQAPVGWLSDRMDRRVLLLLQGLAG
CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCC
TGLCAAIAWPGSYPQMLLYGLFFAYGAIALTIYPVGIAYANSQLDSRHMVSASGSLLLLY
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCEEEEE
SIGNIMTPGLAAQLMELFAPQALFLLLGSGAFLVAATACFNLLRRPIGAAKPCFTTGGNE
ECCCCCCCHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMRDPDRTIGDFWRKAAGLRAILHVMASICIVATGNSLLTTTVSLHLSDPAIDPHVVQLL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCHHHHHHH
LTAFPIGFLAGCLSARFMVVRFGHERAFLAVALLAAFGACGYMLTEVAPVWFCLRLINGF
HHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SIATLFVVSESWINLYADQKNRGAYFSLYMLMTSLATLFAQLLVEAAGATSPHLFQIALG
HHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
VILLGLIYARFVGGPWPVLRLPLAVTVDAGNAHSGHRYGIWRLAALAPVAVVCVFQAGMT
HHHHHHHHHHHCCCCCHHHEECEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
NMNVYTMTPIYAERVHLDAAVAVTLVTAFSLGGMLAQAPVGWLSDRMDRRVLLLLQGLAG
CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCC
TGLCAAIAWPGSYPQMLLYGLFFAYGAIALTIYPVGIAYANSQLDSRHMVSASGSLLLLY
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCEEEEE
SIGNIMTPGLAAQLMELFAPQALFLLLGSGAFLVAATACFNLLRRPIGAAKPCFTTGGNE
ECCCCCCCHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA