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The map label for this gene is ugpB [H]

Identifier: 116248687

GI number: 116248687

Start: 10264

End: 11613

Strand: Direct

Name: ugpB [H]

Synonym: pRL120011

Alternate gene names: 116248687

Gene position: 10264-11613 (Clockwise)

Preceding gene: 116248686

Following gene: 116248688

Centisome position: 1.18

GC content: 57.04

Gene sequence:

>1350_bases
ATGAATCGACAACAAGTGGGAGTGAGAATGAACAAGATCGCTTTTTTCCTGTCCGCAGGACTGACCAGCCTTTCGTTATC
CGTTCCGGCCATGGCCGCCACGAAGATCCAGTGGTGGCACGCAATGGGTGGCGAGAACGGCGCGAAGCTTGAACAGATCG
CCAAGGGGTTCAACGCGTCTCAATCTGACTACGAGATCGTCCCGGTCTTCAAAGGCACCTATGACGAGACGCTGACCGGC
GCCATTGCTGCGTTCCGTGCCAACCAGCAGCCGGCTATCGTACAGGTCTATGAAGTCGGCACCGGCACGATGATGGCAGC
ACAAGGTGCGGTCTATCCCGTCTACCAGTTGATGAAGGACGAAGGGGAGGCCTGGGACCAGAGCAAATTCATTGCCCCGG
TCGTCGGCTACTACTCGGACACCAGCGGCAACGTCTTGTCCTTGCCGTTCAATTCCTCGACGCCGATCATGTATTACAAC
AAGGACGTCTTCAAAAAGGCGGGGCTCGATCCGGAAACACCGCCGAAAACATGGGCGGACGTCGAAGCCTTCTCACGGAC
GATCATGAAGTCCGGCGCAGCCAAATGCGGCTTTACCAGCGCCTGGATCTCCTGGATCCAGACCGAAAACCTCAATGCCT
TGCATGACAAGCCCTACTCCACCAAGGCCAACGGTTTTGGTGGCCTGGACGCGGAATTCACCTTCAACAACGATCTGACG
ATCCGCCATTGGGGCAATCTGAAGAAGTGGCAGGACGAGGGGCTCTTCAAATTCGGCGGACCTGGCGGCGGCGATAACGC
TCCTCCGATGTTCTATTCGCAGGAGTGCGCGATGTACATGAATTCCTCGGCCGGCCGGGCCGGTGTCATCAACAATGCAA
AGGCTTTCAAGGTCGGGTTTGCGCCGCTTCCCTACTATGACGATGTCATTCCGCAGCCGCTCAATTCGATTATCGGCGGC
GCCACGCTCTGGACGCTGAAAGGCCGCCCGGAAGAGGAGTACAAGGGGGTCGCGAAATTCTTCACCTATCTGCAGAAGCC
GGAAGTCCAAGCCGATTGGCATCAGTTCTCGGGCTACCTGCCGATAACCGAGGCTGCGTATAAGCTGGGCCAGGACCAGG
GCTATTACGAGAAGAATCCCGGAGCAGATATCGGCATCAAGCAACTGACGCGGGTGACACCCACCGACAATTCCAAGGGT
ATCCGGTTCGGCAACTACGTCCAGGTGCGTGGCATCATCGACGATGAGTTTGCAGCCTTGCTGGGTGGGAAGAAGACGGC
GAAGGAAGCGGTTGATTCCGTAGTCGCAAGAGGCAACGAACAGCTTCGCGATTTCCAGTCCGCCAACTAA

Upstream 100 bases:

>100_bases
GACCGTCGGGCTTGGTGTCATCTAATGTTCATATGAACATTGCATATTTGCAAAGTGAAACTCGCCTGTTACGATCGGCT
CACGTTCGTAGCGGGAGGCT

Downstream 100 bases:

>100_bases
TGGGCTCCGCGACGGGGGCTGGTGAGAGACCGGCCCCCGTTTCCCATCCGTCAGTGTGAGGGCCTATGCAAACCAAACGG
ACCGTATTTCCCAACAAGCT

Product: putative substrate-binding periplasmic protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 449

Protein sequence:

>449_residues
MNRQQVGVRMNKIAFFLSAGLTSLSLSVPAMAATKIQWWHAMGGENGAKLEQIAKGFNASQSDYEIVPVFKGTYDETLTG
AIAAFRANQQPAIVQVYEVGTGTMMAAQGAVYPVYQLMKDEGEAWDQSKFIAPVVGYYSDTSGNVLSLPFNSSTPIMYYN
KDVFKKAGLDPETPPKTWADVEAFSRTIMKSGAAKCGFTSAWISWIQTENLNALHDKPYSTKANGFGGLDAEFTFNNDLT
IRHWGNLKKWQDEGLFKFGGPGGGDNAPPMFYSQECAMYMNSSAGRAGVINNAKAFKVGFAPLPYYDDVIPQPLNSIIGG
ATLWTLKGRPEEEYKGVAKFFTYLQKPEVQADWHQFSGYLPITEAAYKLGQDQGYYEKNPGADIGIKQLTRVTPTDNSKG
IRFGNYVQVRGIIDDEFAALLGGKKTAKEAVDSVVARGNEQLRDFQSAN

Sequences:

>Translated_449_residues
MNRQQVGVRMNKIAFFLSAGLTSLSLSVPAMAATKIQWWHAMGGENGAKLEQIAKGFNASQSDYEIVPVFKGTYDETLTG
AIAAFRANQQPAIVQVYEVGTGTMMAAQGAVYPVYQLMKDEGEAWDQSKFIAPVVGYYSDTSGNVLSLPFNSSTPIMYYN
KDVFKKAGLDPETPPKTWADVEAFSRTIMKSGAAKCGFTSAWISWIQTENLNALHDKPYSTKANGFGGLDAEFTFNNDLT
IRHWGNLKKWQDEGLFKFGGPGGGDNAPPMFYSQECAMYMNSSAGRAGVINNAKAFKVGFAPLPYYDDVIPQPLNSIIGG
ATLWTLKGRPEEEYKGVAKFFTYLQKPEVQADWHQFSGYLPITEAAYKLGQDQGYYEKNPGADIGIKQLTRVTPTDNSKG
IRFGNYVQVRGIIDDEFAALLGGKKTAKEAVDSVVARGNEQLRDFQSAN
>Mature_449_residues
MNRQQVGVRMNKIAFFLSAGLTSLSLSVPAMAATKIQWWHAMGGENGAKLEQIAKGFNASQSDYEIVPVFKGTYDETLTG
AIAAFRANQQPAIVQVYEVGTGTMMAAQGAVYPVYQLMKDEGEAWDQSKFIAPVVGYYSDTSGNVLSLPFNSSTPIMYYN
KDVFKKAGLDPETPPKTWADVEAFSRTIMKSGAAKCGFTSAWISWIQTENLNALHDKPYSTKANGFGGLDAEFTFNNDLT
IRHWGNLKKWQDEGLFKFGGPGGGDNAPPMFYSQECAMYMNSSAGRAGVINNAKAFKVGFAPLPYYDDVIPQPLNSIIGG
ATLWTLKGRPEEEYKGVAKFFTYLQKPEVQADWHQFSGYLPITEAAYKLGQDQGYYEKNPGADIGIKQLTRVTPTDNSKG
IRFGNYVQVRGIIDDEFAALLGGKKTAKEAVDSVVARGNEQLRDFQSAN

Specific function: Part of the ABC transporter complex ugpABCE involved in sn-glycerol-3-phosphate import [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=420, Percent_Identity=47.8571428571429, Blast_Score=403, Evalue=1e-113,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 49286; Mature: 49286

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRQQVGVRMNKIAFFLSAGLTSLSLSVPAMAATKIQWWHAMGGENGAKLEQIAKGFNAS
CCCHHHCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
QSDYEIVPVFKGTYDETLTGAIAAFRANQQPAIVQVYEVGTGTMMAAQGAVYPVYQLMKD
CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCHHHHHHHHHH
EGEAWDQSKFIAPVVGYYSDTSGNVLSLPFNSSTPIMYYNKDVFKKAGLDPETPPKTWAD
CCCCCCCCCCHHHHHHCEECCCCCEEEECCCCCCCEEEECHHHHHHCCCCCCCCCCCHHH
VEAFSRTIMKSGAAKCGFTSAWISWIQTENLNALHDKPYSTKANGFGGLDAEFTFNNDLT
HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCEEEECCCEE
IRHWGNLKKWQDEGLFKFGGPGGGDNAPPMFYSQECAMYMNSSAGRAGVINNAKAFKVGF
EEECCCCCCCCCCCCEEECCCCCCCCCCCCEECCHHHHHHCCCCCCCCCCCCCCEEEEEC
APLPYYDDVIPQPLNSIIGGATLWTLKGRPEEEYKGVAKFFTYLQKPEVQADWHQFSGYL
CCCCCCCCCCCHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCC
PITEAAYKLGQDQGYYEKNPGADIGIKQLTRVTPTDNSKGIRFGNYVQVRGIIDDEFAAL
CHHHHHHHHCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCEECCEEEEEECCCHHHHHH
LGGKKTAKEAVDSVVARGNEQLRDFQSAN
HCCCHHHHHHHHHHHHCCCHHHHHHCCCC
>Mature Secondary Structure
MNRQQVGVRMNKIAFFLSAGLTSLSLSVPAMAATKIQWWHAMGGENGAKLEQIAKGFNAS
CCCHHHCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
QSDYEIVPVFKGTYDETLTGAIAAFRANQQPAIVQVYEVGTGTMMAAQGAVYPVYQLMKD
CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCHHHHHHHHHH
EGEAWDQSKFIAPVVGYYSDTSGNVLSLPFNSSTPIMYYNKDVFKKAGLDPETPPKTWAD
CCCCCCCCCCHHHHHHCEECCCCCEEEECCCCCCCEEEECHHHHHHCCCCCCCCCCCHHH
VEAFSRTIMKSGAAKCGFTSAWISWIQTENLNALHDKPYSTKANGFGGLDAEFTFNNDLT
HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCEEEECCCEE
IRHWGNLKKWQDEGLFKFGGPGGGDNAPPMFYSQECAMYMNSSAGRAGVINNAKAFKVGF
EEECCCCCCCCCCCCEEECCCCCCCCCCCCEECCHHHHHHCCCCCCCCCCCCCCEEEEEC
APLPYYDDVIPQPLNSIIGGATLWTLKGRPEEEYKGVAKFFTYLQKPEVQADWHQFSGYL
CCCCCCCCCCCHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCC
PITEAAYKLGQDQGYYEKNPGADIGIKQLTRVTPTDNSKGIRFGNYVQVRGIIDDEFAAL
CHHHHHHHHCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCEECCEEEEEECCCHHHHHH
LGGKKTAKEAVDSVVARGNEQLRDFQSAN
HCCCHHHHHHHHHHHHCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481431 [H]