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The map label for this gene is ydeS [H]

Identifier: 114800535

GI number: 114800535

Start: 9666

End: 10274

Strand: Reverse

Name: ydeS [H]

Synonym: HNE_0014

Alternate gene names: 114800535

Gene position: 10274-9666 (Counterclockwise)

Preceding gene: 114798033

Following gene: 114799986

Centisome position: 0.28

GC content: 67.0

Gene sequence:

>609_bases
ATGACAACGCCGACCGAAACCCCGAGCCCGCCCTCGCGCTCCCGTAAGGGGCCAACGCGCAGCGAGGTGTCCAAGGCCGC
AATCCTGGAAGCGGCCCGCGATGAGATGGCCGAGAATGGCTGGCGCGGTTTCAGTGTGGATTCTGTCGCCAAGCGCGCCA
GCGCCTCCAAGCAGACGATCTATCGCTGGTGGCCGTCAATCGGCGCGATGTGTGTCGACGCAGCGCTCGCCTTGATCCCG
GACGCTCCCGATGGCGGACGCGACCCGCAGGAGCGGATTACAGCGCTGATCATTCCGCTCGAAGCGGCTGCCCGTACCGG
GCATGGCCATGCCGTGCTGCGCGTGGCGCTGCTGGCGGCGGCCGATGACAAGGAAGCCGGTGAAGTATGGCGCGCCTGGG
TCGGCCGCGACATTCGCCAGCCCCTGCGCATGCTGCTGGCCGAACTCGCAGCGCGACGTGTGATCCGCCGCGATTTCGAA
CTCGATGACGTGCTCGAACAGCTGCTGGGACCGATCTTCCACAGGCTGACGATCTCGCGTGCGCCAGTCAAGGAAGGCTT
CTGCGCCGAGCAGGCGACCGCGTTCCTGCGGACCTACGCCGCGTTCTGA

Upstream 100 bases:

>100_bases
AGCAAATTTGAAACGAATCCTCGTTAACACGGAACGGTCAGTCTCGCCTAAGGGCCGAATCCGGTCTATCAAGACGTGCT
GTGCGATGGAGACGCCCCAC

Downstream 100 bases:

>100_bases
TTTTCGAAAAGTGAATTGCCGGAGGTGACGGGCGGCGGCGCTATTTGGCGCGGCGCCAGATCATCAGCGGATCGAACGCG
CCCGTGTCAGCTGCTTTCTG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MTTPTETPSPPSRSRKGPTRSEVSKAAILEAARDEMAENGWRGFSVDSVAKRASASKQTIYRWWPSIGAMCVDAALALIP
DAPDGGRDPQERITALIIPLEAAARTGHGHAVLRVALLAAADDKEAGEVWRAWVGRDIRQPLRMLLAELAARRVIRRDFE
LDDVLEQLLGPIFHRLTISRAPVKEGFCAEQATAFLRTYAAF

Sequences:

>Translated_202_residues
MTTPTETPSPPSRSRKGPTRSEVSKAAILEAARDEMAENGWRGFSVDSVAKRASASKQTIYRWWPSIGAMCVDAALALIP
DAPDGGRDPQERITALIIPLEAAARTGHGHAVLRVALLAAADDKEAGEVWRAWVGRDIRQPLRMLLAELAARRVIRRDFE
LDDVLEQLLGPIFHRLTISRAPVKEGFCAEQATAFLRTYAAF
>Mature_201_residues
TTPTETPSPPSRSRKGPTRSEVSKAAILEAARDEMAENGWRGFSVDSVAKRASASKQTIYRWWPSIGAMCVDAALALIPD
APDGGRDPQERITALIIPLEAAARTGHGHAVLRVALLAAADDKEAGEVWRAWVGRDIRQPLRMLLAELAARRVIRRDFEL
DDVLEQLLGPIFHRLTISRAPVKEGFCAEQATAFLRTYAAF

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22185; Mature: 22053

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPTETPSPPSRSRKGPTRSEVSKAAILEAARDEMAENGWRGFSVDSVAKRASASKQTI
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
YRWWPSIGAMCVDAALALIPDAPDGGRDPQERITALIIPLEAAARTGHGHAVLRVALLAA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHH
ADDKEAGEVWRAWVGRDIRQPLRMLLAELAARRVIRRDFELDDVLEQLLGPIFHRLTISR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
APVKEGFCAEQATAFLRTYAAF
CCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTPTETPSPPSRSRKGPTRSEVSKAAILEAARDEMAENGWRGFSVDSVAKRASASKQTI
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
YRWWPSIGAMCVDAALALIPDAPDGGRDPQERITALIIPLEAAARTGHGHAVLRVALLAA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHH
ADDKEAGEVWRAWVGRDIRQPLRMLLAELAARRVIRRDFELDDVLEQLLGPIFHRLTISR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
APVKEGFCAEQATAFLRTYAAF
CCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]