Click here to switch to the map view.

The map label for this gene is pal [C]

Identifier: 114800514

GI number: 114800514

Start: 2074218

End: 2075381

Strand: Reverse

Name: pal [C]

Synonym: HNE_1998

Alternate gene names: 114800514

Gene position: 2075381-2074218 (Counterclockwise)

Preceding gene: 114799751

Following gene: 114797736

Centisome position: 56.02

GC content: 61.08

Gene sequence:

>1164_bases
ATGAAGAAAACTCTGTTGTGCGCGACCGCCGCGGCCGCTCTTGCGACTGTTGGCGCGACTGCGCACGCCGAAGACGGCTG
GTATGGTCGCGCTGACGCGCAGTACACCTTCGACGGCATTCTGGATCACGACGGCGCGACTGACGTCAACGGCACGATCG
CTGGTGATTCGTCGGCGACTGAAAACGGCGGCCTTGGTATCGGTCTTGGCTACGGCTTTGCAAACGGCCTGCGCCTCGAA
ACCGTTCTCGGCAATCGCAATGGCGGCATTGACGTCCCGACTGCAATCAATGGCGTGCTTCCCGGCACGGCAAATGCTTC
GGGCCATGTCAGCGTCACTGACCTGATGGTCAACGGCCTTTACGACTTCAACAAAGGCGGCACGATCGTCCCTTACATCG
GTCTCGGTGTTGGTGGCGCACGGGTTGATGCAAAAGCATCGAACCGCGTTCTCGTTGATGGCGACGATTCCCACGCGCTG
AACGGCTTCTCCGACAAAGCAACCGGCATTGCCTACCAGGGCCTGCTCGGCGTCGGCTTCAAGCTGAGCGAGCGTCTCAC
CATGGACGTTGGCTACAAGTACTTCACCGTTGAAGATCTCGACTTCGCCGGTAAGCACGGTGGCCCAGGCTACGACGCGA
ACTATCAGGATCACTCGGCAACTCTGGGTCTGCGTTATTCCTTCGCAGCTCCTCCGGCGCCGCCTCCGCCACCACCACCG
CCGCCGCCTCCGCCACCACCTCCGCCGCCACCACCGCCACCTCCGCCGCCTCCGCCTGAAGAGACGACGCCTCCGCTGGC
TCAGCAGTGTTCTGCTCTCAGCCAAGAGTTCGTTGTTTACTTCGAGTGGGATCGCTCGGACGTGACGAGCCAGGCTGCGG
CCGTTATCGATCAGGCTGTTGCCAACATCCGTTCGGTTGAAGGTTGTGCTGCTGGTTCGGTGACGATCGTTGGTCACACC
GATACCTCGGGTAACCCCGACTACAACCAGCGTCTGTCGGTTCGCCGCGCTGACGTGGTTGCAGCTGCTCTCTCCGAGCG
CGGTATTGCCAACACGCTGATCACCCAAGACGGTAAAGGCGAGACCGCCCTGGCGAAAGCCACGCAGGATGGTGTTCGCG
AGCCTCTGAACCGTCGTTCGGAAGTTACGATCATCGTTCAGTAA

Upstream 100 bases:

>100_bases
GGCGGAAAAAACGTTTAACACCAAAGCATGCGGTTAATACCCGCTATGAACCTGCGGCCGAGGGCAATCCCGTCATTCGG
CACACAAAAGGGGATTGAGT

Downstream 100 bases:

>100_bases
CGGCGATTGATACCCTTAAGGAAACGGCCCGGCGAAAGCTGGGCCGTTTTTTGTTTTCGTGGGGTAAGGGCGAAGGCTTG
CCGGGTGGCTTCAGCTGTGA

Product: OmpA family protein

Products: NA

Alternate protein names: OMPC [H]

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MKKTLLCATAAAALATVGATAHAEDGWYGRADAQYTFDGILDHDGATDVNGTIAGDSSATENGGLGIGLGYGFANGLRLE
TVLGNRNGGIDVPTAINGVLPGTANASGHVSVTDLMVNGLYDFNKGGTIVPYIGLGVGGARVDAKASNRVLVDGDDSHAL
NGFSDKATGIAYQGLLGVGFKLSERLTMDVGYKYFTVEDLDFAGKHGGPGYDANYQDHSATLGLRYSFAAPPAPPPPPPP
PPPPPPPPPPPPPPPPPPPEETTPPLAQQCSALSQEFVVYFEWDRSDVTSQAAAVIDQAVANIRSVEGCAAGSVTIVGHT
DTSGNPDYNQRLSVRRADVVAAALSERGIANTLITQDGKGETALAKATQDGVREPLNRRSEVTIIVQ

Sequences:

>Translated_387_residues
MKKTLLCATAAAALATVGATAHAEDGWYGRADAQYTFDGILDHDGATDVNGTIAGDSSATENGGLGIGLGYGFANGLRLE
TVLGNRNGGIDVPTAINGVLPGTANASGHVSVTDLMVNGLYDFNKGGTIVPYIGLGVGGARVDAKASNRVLVDGDDSHAL
NGFSDKATGIAYQGLLGVGFKLSERLTMDVGYKYFTVEDLDFAGKHGGPGYDANYQDHSATLGLRYSFAAPPAPPPPPPP
PPPPPPPPPPPPPPPPPPPEETTPPLAQQCSALSQEFVVYFEWDRSDVTSQAAAVIDQAVANIRSVEGCAAGSVTIVGHT
DTSGNPDYNQRLSVRRADVVAAALSERGIANTLITQDGKGETALAKATQDGVREPLNRRSEVTIIVQ
>Mature_387_residues
MKKTLLCATAAAALATVGATAHAEDGWYGRADAQYTFDGILDHDGATDVNGTIAGDSSATENGGLGIGLGYGFANGLRLE
TVLGNRNGGIDVPTAINGVLPGTANASGHVSVTDLMVNGLYDFNKGGTIVPYIGLGVGGARVDAKASNRVLVDGDDSHAL
NGFSDKATGIAYQGLLGVGFKLSERLTMDVGYKYFTVEDLDFAGKHGGPGYDANYQDHSATLGLRYSFAAPPAPPPPPPP
PPPPPPPPPPPPPPPPPPPEETTPPLAQQCSALSQEFVVYFEWDRSDVTSQAAAVIDQAVANIRSVEGCAAGSVTIVGHT
DTSGNPDYNQRLSVRRADVVAAALSERGIANTLITQDGKGETALAKATQDGVREPLNRRSEVTIIVQ

Specific function: Growth enhancer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 39979; Mature: 39979

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLLCATAAAALATVGATAHAEDGWYGRADAQYTFDGILDHDGATDVNGTIAGDSSAT
CCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCEECCCCCCCCCCEEECCCCCC
ENGGLGIGLGYGFANGLRLETVLGNRNGGIDVPTAINGVLPGTANASGHVSVTDLMVNGL
CCCCEEEEECCCCCCCEEEEEEECCCCCCEECCHHHCCCCCCCCCCCCCEEEHHEEEECC
YDFNKGGTIVPYIGLGVGGARVDAKASNRVLVDGDDSHALNGFSDKATGIAYQGLLGVGF
EEECCCCEEEEEEEECCCCCEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEHHHHHCCE
KLSERLTMDVGYKYFTVEDLDFAGKHGGPGYDANYQDHSATLGLRYSFAAPPAPPPPPPP
ECCCEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC
PPPPPPPPPPPPPPPPPPPEETTPPLAQQCSALSQEFVVYFEWDRSDVTSQAAAVIDQAV
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHH
ANIRSVEGCAAGSVTIVGHTDTSGNPDYNQRLSVRRADVVAAALSERGIANTLITQDGKG
HHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC
ETALAKATQDGVREPLNRRSEVTIIVQ
CHHHHHHHHHHHHHHHCCCCCEEEEEC
>Mature Secondary Structure
MKKTLLCATAAAALATVGATAHAEDGWYGRADAQYTFDGILDHDGATDVNGTIAGDSSAT
CCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCEECCCCCCCCCCEEECCCCCC
ENGGLGIGLGYGFANGLRLETVLGNRNGGIDVPTAINGVLPGTANASGHVSVTDLMVNGL
CCCCEEEEECCCCCCCEEEEEEECCCCCCEECCHHHCCCCCCCCCCCCCEEEHHEEEECC
YDFNKGGTIVPYIGLGVGGARVDAKASNRVLVDGDDSHALNGFSDKATGIAYQGLLGVGF
EEECCCCEEEEEEEECCCCCEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEHHHHHCCE
KLSERLTMDVGYKYFTVEDLDFAGKHGGPGYDANYQDHSATLGLRYSFAAPPAPPPPPPP
ECCCEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC
PPPPPPPPPPPPPPPPPPPEETTPPLAQQCSALSQEFVVYFEWDRSDVTSQAAAVIDQAV
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHH
ANIRSVEGCAAGSVTIVGHTDTSGNPDYNQRLSVRRADVVAAALSERGIANTLITQDGKG
HHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC
ETALAKATQDGVREPLNRRSEVTIIVQ
CHHHHHHHHHHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA