Click here to switch to the map view.

The map label for this gene is pcaC [H]

Identifier: 114800170

GI number: 114800170

Start: 13582

End: 14001

Strand: Direct

Name: pcaC [H]

Synonym: HNE_0019

Alternate gene names: 114800170

Gene position: 13582-14001 (Clockwise)

Preceding gene: 114799979

Following gene: 114799370

Centisome position: 0.37

GC content: 63.1

Gene sequence:

>420_bases
ATGATCGCCGCGCCCGCTTTTGCCCAGACCTCAGACGAGCGTCTGGAGCGCGGAAGCGCTGTTATCCGTGAGCTGAACAA
TGGGGCACCCCAGCCGGTGCTGGAGGATATGCGGGAGGAGTTTCCTTTCCTGGCAGATGCCACGCAAGGCTATGCGCTCG
GTGAGGTCTGGTCCCGCCCCGGCCTTGATAACCGCACGCGCCAGATCGCCGCCGTCGCAGCCTTTGCCGCGATCGGAGAA
ACAGGCTTCATGAGAACGCATGCCGGATATGCCCTGAATATCGGTGTGACGGAGGAGGAGTTGAAGGAAGTGATCTACAT
GGTCACGGTTCCGGCAGGCTTCCCGCGCGCCATTTCCGCGTCACAGGTGCTCTCCGAACTTTTCGAGGAGCGCCGCGCCG
CAGCGGAGGGCGCGCCATGA

Upstream 100 bases:

>100_bases
CGAGATTGTTGTCCGTCCCACGGCAAGCGTCTGAAGGAGGGGCACCATGACACAGCTTTTTACACGCCCTCGTATCGCTG
CCTCAATGGCTATGGCTGCC

Downstream 100 bases:

>100_bases
AAGCTCTCACTGCCGCCGTTATCATCATCGCAGGATTGATCCCTGCTCAGACAGGATATTCCCAGATGGCCTCAGACCCT
GAAGCAAGCTCCGTATCAGA

Product: carboxymuconolactone decarboxylase domain-containing protein

Products: NA

Alternate protein names: CMD [H]

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MIAAPAFAQTSDERLERGSAVIRELNNGAPQPVLEDMREEFPFLADATQGYALGEVWSRPGLDNRTRQIAAVAAFAAIGE
TGFMRTHAGYALNIGVTEEELKEVIYMVTVPAGFPRAISASQVLSELFEERRAAAEGAP

Sequences:

>Translated_139_residues
MIAAPAFAQTSDERLERGSAVIRELNNGAPQPVLEDMREEFPFLADATQGYALGEVWSRPGLDNRTRQIAAVAAFAAIGE
TGFMRTHAGYALNIGVTEEELKEVIYMVTVPAGFPRAISASQVLSELFEERRAAAEGAP
>Mature_139_residues
MIAAPAFAQTSDERLERGSAVIRELNNGAPQPVLEDMREEFPFLADATQGYALGEVWSRPGLDNRTRQIAAVAAFAAIGE
TGFMRTHAGYALNIGVTEEELKEVIYMVTVPAGFPRAISASQVLSELFEERRAAAEGAP

Specific function: Unknown

COG id: COG0599

COG function: function code S; Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003779
- InterPro:   IPR012788 [H]

Pfam domain/function: PF02627 CMD [H]

EC number: =4.1.1.44 [H]

Molecular weight: Translated: 15012; Mature: 15012

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAAPAFAQTSDERLERGSAVIRELNNGAPQPVLEDMREEFPFLADATQGYALGEVWSRP
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHCCCCCCCHHHHHCCC
GLDNRTRQIAAVAAFAAIGETGFMRTHAGYALNIGVTEEELKEVIYMVTVPAGFPRAISA
CCCHHHHHHHHHHHHHHHCCCCCEECCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCH
SQVLSELFEERRAAAEGAP
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIAAPAFAQTSDERLERGSAVIRELNNGAPQPVLEDMREEFPFLADATQGYALGEVWSRP
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHCCCCCCCHHHHHCCC
GLDNRTRQIAAVAAFAAIGETGFMRTHAGYALNIGVTEEELKEVIYMVTVPAGFPRAISA
CCCHHHHHHHHHHHHHHHCCCCCEECCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCH
SQVLSELFEERRAAAEGAP
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2298704 [H]