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The map label for this gene is rimP

Identifier: 114800120

GI number: 114800120

Start: 98773

End: 99372

Strand: Direct

Name: rimP

Synonym: HNE_0111

Alternate gene names: 114800120

Gene position: 98773-99372 (Clockwise)

Preceding gene: 114797127

Following gene: 114799070

Centisome position: 2.67

GC content: 61.83

Gene sequence:

>600_bases
ATGATCGTTCTGACTGAACAGGAACGCCGCCTTCTCTCCCTGGTCCAGCCGGTGGCTGAGGGCCTCGGCATGGAAATCGT
GCGTCTGCGCGTTCAGGGCGGGCGCCGCCCGCATCTGCAGATCATGGCCGAGCGGGCAGGGGGTGCGCCAACCGGTATCG
AAGATTGCGCGCGTCTCTCGCGTGGCATGTCCCCGGTCCTTGAAGCAGCTGACCCCATTTCTGAGGCTTACACACTCGAA
GTGTCGACGCCTGGAATTGACCGCCCGCTGACCCGGCCGGGAGATTTTGCCCGGTGGATCGGCCATGCTGTGCGGATTGA
GCTCGCGCGCCCCATTGATGGCCGGCGCCGTTTTACGGGCACGATCACGGGCGAAGACAATGATGGCGCTCATATCGAGC
TCGACGATGAGACAAAGCTTGTCGCGGCTGTCCATGAGATGAGCCGGGCCAGCCTTGTGCTGACGGATGAACTGATTGAA
GCGGCGCGGGTGGCCGGAAATCTGCCCCCGCAGCCGGAAGACGACGAAGACATGCTCGCCGATTTTGAAATCGACGAGTC
CGAAGACGAAGAAGACCCAGAGACAGGAGATGTCCAATGA

Upstream 100 bases:

>100_bases
GGAGAATTGCGACTATCTAGCGCCCAAGTCGAAATATATCGGCGGCGGGTCCGGAAACGGGTCCGCCGCTTTTCTTTAGT
CCGGAGCCTGCCCTCTGCAC

Downstream 100 bases:

>100_bases
GCGCCATCGGCGTTTCAGCCAACCGGCTTGAAATCCTGCAGATCGCCAAAGCGGTCGCCGAGGAAAAATCGATTGATCAG
CGCATCGTCATTGAGGCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MIVLTEQERRLLSLVQPVAEGLGMEIVRLRVQGGRRPHLQIMAERAGGAPTGIEDCARLSRGMSPVLEAADPISEAYTLE
VSTPGIDRPLTRPGDFARWIGHAVRIELARPIDGRRRFTGTITGEDNDGAHIELDDETKLVAAVHEMSRASLVLTDELIE
AARVAGNLPPQPEDDEDMLADFEIDESEDEEDPETGDVQ

Sequences:

>Translated_199_residues
MIVLTEQERRLLSLVQPVAEGLGMEIVRLRVQGGRRPHLQIMAERAGGAPTGIEDCARLSRGMSPVLEAADPISEAYTLE
VSTPGIDRPLTRPGDFARWIGHAVRIELARPIDGRRRFTGTITGEDNDGAHIELDDETKLVAAVHEMSRASLVLTDELIE
AARVAGNLPPQPEDDEDMLADFEIDESEDEEDPETGDVQ
>Mature_199_residues
MIVLTEQERRLLSLVQPVAEGLGMEIVRLRVQGGRRPHLQIMAERAGGAPTGIEDCARLSRGMSPVLEAADPISEAYTLE
VSTPGIDRPLTRPGDFARWIGHAVRIELARPIDGRRRFTGTITGEDNDGAHIELDDETKLVAAVHEMSRASLVLTDELIE
AARVAGNLPPQPEDDEDMLADFEIDESEDEEDPETGDVQ

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=150, Percent_Identity=32.6666666666667, Blast_Score=87, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_HYPNA (Q0C5Z8)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_758845.1
- ProteinModelPortal:   Q0C5Z8
- SMR:   Q0C5Z8
- STRING:   Q0C5Z8
- GeneID:   4290453
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_0111
- NMPDR:   fig|228405.5.peg.109
- TIGR:   HNE_0111
- eggNOG:   COG0779
- HOGENOM:   HBG668072
- OMA:   HAVRIEL
- PhylomeDB:   Q0C5Z8
- ProtClustDB:   CLSK2532110
- BioCyc:   HNEP81032:HNE_0111-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 21813; Mature: 21813

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVLTEQERRLLSLVQPVAEGLGMEIVRLRVQGGRRPHLQIMAERAGGAPTGIEDCARLS
CEEECHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHEEECCCCCCCCHHHHHHHH
RGMSPVLEAADPISEAYTLEVSTPGIDRPLTRPGDFARWIGHAVRIELARPIDGRRRFTG
CCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHEEEEECCCCCCCEEEEE
TITGEDNDGAHIELDDETKLVAAVHEMSRASLVLTDELIEAARVAGNLPPQPEDDEDMLA
EECCCCCCCCEEEECCCHHHHHHHHHHHHCEEEHHHHHHHHHHHHCCCCCCCCCCHHHEE
DFEIDESEDEEDPETGDVQ
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIVLTEQERRLLSLVQPVAEGLGMEIVRLRVQGGRRPHLQIMAERAGGAPTGIEDCARLS
CEEECHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHEEECCCCCCCCHHHHHHHH
RGMSPVLEAADPISEAYTLEVSTPGIDRPLTRPGDFARWIGHAVRIELARPIDGRRRFTG
CCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHEEEEECCCCCCCEEEEE
TITGEDNDGAHIELDDETKLVAAVHEMSRASLVLTDELIEAARVAGNLPPQPEDDEDMLA
EECCCCCCCCEEEECCCHHHHHHHHHHHHCEEEHHHHHHHHHHHHCCCCCCCCCCHHHEE
DFEIDESEDEEDPETGDVQ
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA