Click here to switch to the map view.

The map label for this gene is cirA [C]

Identifier: 114799847

GI number: 114799847

Start: 3670288

End: 3672783

Strand: Reverse

Name: cirA [C]

Synonym: HNE_3538

Alternate gene names: 114799847

Gene position: 3672783-3670288 (Counterclockwise)

Preceding gene: 114797355

Following gene: 114798108

Centisome position: 99.13

GC content: 58.65

Gene sequence:

>2496_bases
ATGATCCGGAAACACCTGCTAATGACAGCGAGTGCTGCTGTCATGGTCACGGGATTGGCGATGCCGTCCCAGGCTCAAGA
AGATGTGGAGAGCGAGCTTCGCGTCGAAGCCGTAACGGTCACGGCGACCCGGCGCGCTGAAAGCGTTCAGGATATTCCGC
TGAATATCTCCGCCGTGGGAGATCAGCAGATTGAGGAGCAGGGATTTGAAGAACTGGCTGATGTGCTGGCCTATGTTCCC
GGTATCAATATCGTCGACCGCGGCGCCCGTCAGGGTAACCCGCTGATTGTTCGGGGTCTGAACGCCGATGGTCTCGGCTC
GGGTGACGGCAACAATAATGGCGGCGGAACGGTTGCAACCTATATCGGCGAGGTGCCGGTCTATCTCGACCTGAAGCTTA
ACGACCTTGAGCGTGTCGAAGTGCTGCTCGGGCCGCAAGGGACGCTGTATGGAGCCGGCACGCTCGGCGGCGCTATCCGC
TACATTCCAAAGAAGCCGGACTTTGCAGGCGATACGCTGGAAGTGCGCACCGAAGCCTATCAATATTCCGAAGCGGACGA
GCTCTCCTATGAGGCGGGGCTCACCTTCAACAAGGCGCTGGCACCAAACTTTGCCATTCGCGGTTCAATCGATTTCGAGA
ATGATTCGGGGTTCATCGATTATCCCTTTGTAGTGCGTGAGATAGGTGTGTCCGACCCGGACCCGGATTTCAGCGATCCG
GCAGACGTGGCGGCAAACCTGCGCCGGATCACCGATGCGGACAGCGAAGAAACGGTTTCCGCCCGCCTGGCCGCGCTGTG
GGAGCCATTGCCCTGGCTCGACACGACCCTGACCTATTATCTTCAGCAGTCCGACATTGGCGGCCGCCGCGGCTCCAGTG
CGCGCTCAACCGTTCCGGCGGGGGATTATGAACTCGGCAAACGCGTCGAGGAACCAAACGAGATCACCAACCAGCTTCTG
GCGCTGGAAGTCGTCGCCGACCTTGGCTTTGCCGAGCTTACATCCGCCACCGGATATTCGCGTTACAATGACAATGGCCA
GCGCGATCAGACAGATCTGCTGATCACACTGGAATACAGCTACGAAGCCTTCCCGACCTTTACGGCTTTCACTCATGAGA
AGGGCCAGGAGAGCCGGATCAATCAGGAGCTGCGGCTTGTTTCGACCACGGAAGGTCCGCTCAGCTGGATTGTCGGCGCG
TTCTACAACCAGTTCGAAGGCGGCGGTTACTCGGCAGAGTATACACCGGGTTATGCAGACTTTGCCGGATTTGATCGCCC
CGACGACCTTGAATATTATTCGCAGGGTTTTTCAAAGCTTGAGGAATCGGCCTTCTTCGGGGAGGTCGGCTATGACATCA
CCGATAAATGGTCGGTCACCGTGGGCGGGCGCTATTATCAGTATGATCTTGAATCCTTCAGCGATGTCGATTTCCCGCTG
TTTGATCCGAGCTTCCTTCCGGTCGGCGTAAGTTCGCTTGAATCCAGTCTGCGGTCTGATTTCGCGGCCGGCAGCCCGAA
TGGCACCGAACGCACCAGCCAGTCGGATGAGGGCACGCTTTTCAAGTTCAATACGTCCTATCAGTTCACGGAAGACCTGC
TCGGCTACTTCACCTTGTCTGAAGGCTACCGGATCGGGAACCAGAACGGCGTAGGCGTTTGCCCGGCTTATGACCCCGAC
GACAACCAGCAGGGTGCCTGCGCCTTGCTGCCGGGACAACAATTCGGTCCCAATCCGGGTGATGTATCGACGCGGGATGA
AAGCCAGTATCTTCCCGATACCACGACCAACTACGAACTTGGCTTCAAGTCGACGCTCGCGGGCGGGCGCGTAACGCTGA
ACGGCGCAGTCTATTATGTCGAATGGGTCGATCCGCAGCTGACCTCAGCCACGATCAATGCGTCCATCCCGATCACGGTG
AACGCCGAAGGCGCCGAGTCCAAAGGGGTAGAAGTCAGCGGTAACTGGCTGGTCTCGGAAGACTTCTCCCTGCGCGGCAG
CTACAGCCATTCTGAAGCTTCGCTCACTGCGCTCGCGCCAGGTCTGGTCGGCACCATCTCTCCGCCAGGTTTCGGCTCGG
TCCTGCTTGATGGTCAGGACGGAGACCGGTTGCCGGGCTCCCCGGAAGACCAGTTCTCGCTCTTTGGCTCCTATGTCTAC
GATCTGCCATCGGGCCGCACGCTGACCTTCAATGGCGGATACGCCTGGCAGGGTGATGTTCTCAGCCGGACGGGAGATCG
CGGAAATGGTCTGACGCTCGACAGCTACGGCGTCGCCAATGTCTCGGCGGTCTATGATGCAGGCAAATGGCAGGCGACGC
TGTTCGTCAACAACCTGCTGGATGAGTATTATGAAACCGGCGTGGTCAGCTCGGCGCTGACTAATCAGGTGCTCACCGAT
GTGGATGGCGGGCCGGTCTATACCCGCTCCTACTACACCTATGTCGGGGCGCCCCGCGCCATCGGCATCCGGGCAAGCTA
CAAGTTCGGCGAATAA

Upstream 100 bases:

>100_bases
AAATCAAACCGGTGTCTGCAGCCAGACTTGCTCCCGGCGCGTCCCGCACAGTTTCTGGTCACGTCGAGGGGACAGAAAAC
GACAAATCAGAGGTACAAAG

Downstream 100 bases:

>100_bases
CTCCTGGGGAAGAATGCCCAACCGGCAAGGCCGCCCTTTGCAGGGGCGGCCTTTTCACATTGCCGGGATGAAGATGGCGC
GGCGCAAATTCCGGGTGGCG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Plug; NB-Dependent Receptor Domain Protein; NB-Dependent Receptor Plug Domain Protein; NB-Dependent Receptor Protein; Receptor -Mostly Fe Transport; Nb-Dependent Receptor; Outer Membrane nB-Dependent Receptor; NB-Dependent Siderophore Receptor; Outer Membrane Protein; NB Dependent Receptor; NB-Dependent Receptor-Like Protein; Transporter OMR Family; Outer Membrane Receptor Family Protein

Number of amino acids: Translated: 831; Mature: 831

Protein sequence:

>831_residues
MIRKHLLMTASAAVMVTGLAMPSQAQEDVESELRVEAVTVTATRRAESVQDIPLNISAVGDQQIEEQGFEELADVLAYVP
GINIVDRGARQGNPLIVRGLNADGLGSGDGNNNGGGTVATYIGEVPVYLDLKLNDLERVEVLLGPQGTLYGAGTLGGAIR
YIPKKPDFAGDTLEVRTEAYQYSEADELSYEAGLTFNKALAPNFAIRGSIDFENDSGFIDYPFVVREIGVSDPDPDFSDP
ADVAANLRRITDADSEETVSARLAALWEPLPWLDTTLTYYLQQSDIGGRRGSSARSTVPAGDYELGKRVEEPNEITNQLL
ALEVVADLGFAELTSATGYSRYNDNGQRDQTDLLITLEYSYEAFPTFTAFTHEKGQESRINQELRLVSTTEGPLSWIVGA
FYNQFEGGGYSAEYTPGYADFAGFDRPDDLEYYSQGFSKLEESAFFGEVGYDITDKWSVTVGGRYYQYDLESFSDVDFPL
FDPSFLPVGVSSLESSLRSDFAAGSPNGTERTSQSDEGTLFKFNTSYQFTEDLLGYFTLSEGYRIGNQNGVGVCPAYDPD
DNQQGACALLPGQQFGPNPGDVSTRDESQYLPDTTTNYELGFKSTLAGGRVTLNGAVYYVEWVDPQLTSATINASIPITV
NAEGAESKGVEVSGNWLVSEDFSLRGSYSHSEASLTALAPGLVGTISPPGFGSVLLDGQDGDRLPGSPEDQFSLFGSYVY
DLPSGRTLTFNGGYAWQGDVLSRTGDRGNGLTLDSYGVANVSAVYDAGKWQATLFVNNLLDEYYETGVVSSALTNQVLTD
VDGGPVYTRSYYTYVGAPRAIGIRASYKFGE

Sequences:

>Translated_831_residues
MIRKHLLMTASAAVMVTGLAMPSQAQEDVESELRVEAVTVTATRRAESVQDIPLNISAVGDQQIEEQGFEELADVLAYVP
GINIVDRGARQGNPLIVRGLNADGLGSGDGNNNGGGTVATYIGEVPVYLDLKLNDLERVEVLLGPQGTLYGAGTLGGAIR
YIPKKPDFAGDTLEVRTEAYQYSEADELSYEAGLTFNKALAPNFAIRGSIDFENDSGFIDYPFVVREIGVSDPDPDFSDP
ADVAANLRRITDADSEETVSARLAALWEPLPWLDTTLTYYLQQSDIGGRRGSSARSTVPAGDYELGKRVEEPNEITNQLL
ALEVVADLGFAELTSATGYSRYNDNGQRDQTDLLITLEYSYEAFPTFTAFTHEKGQESRINQELRLVSTTEGPLSWIVGA
FYNQFEGGGYSAEYTPGYADFAGFDRPDDLEYYSQGFSKLEESAFFGEVGYDITDKWSVTVGGRYYQYDLESFSDVDFPL
FDPSFLPVGVSSLESSLRSDFAAGSPNGTERTSQSDEGTLFKFNTSYQFTEDLLGYFTLSEGYRIGNQNGVGVCPAYDPD
DNQQGACALLPGQQFGPNPGDVSTRDESQYLPDTTTNYELGFKSTLAGGRVTLNGAVYYVEWVDPQLTSATINASIPITV
NAEGAESKGVEVSGNWLVSEDFSLRGSYSHSEASLTALAPGLVGTISPPGFGSVLLDGQDGDRLPGSPEDQFSLFGSYVY
DLPSGRTLTFNGGYAWQGDVLSRTGDRGNGLTLDSYGVANVSAVYDAGKWQATLFVNNLLDEYYETGVVSSALTNQVLTD
VDGGPVYTRSYYTYVGAPRAIGIRASYKFGE
>Mature_831_residues
MIRKHLLMTASAAVMVTGLAMPSQAQEDVESELRVEAVTVTATRRAESVQDIPLNISAVGDQQIEEQGFEELADVLAYVP
GINIVDRGARQGNPLIVRGLNADGLGSGDGNNNGGGTVATYIGEVPVYLDLKLNDLERVEVLLGPQGTLYGAGTLGGAIR
YIPKKPDFAGDTLEVRTEAYQYSEADELSYEAGLTFNKALAPNFAIRGSIDFENDSGFIDYPFVVREIGVSDPDPDFSDP
ADVAANLRRITDADSEETVSARLAALWEPLPWLDTTLTYYLQQSDIGGRRGSSARSTVPAGDYELGKRVEEPNEITNQLL
ALEVVADLGFAELTSATGYSRYNDNGQRDQTDLLITLEYSYEAFPTFTAFTHEKGQESRINQELRLVSTTEGPLSWIVGA
FYNQFEGGGYSAEYTPGYADFAGFDRPDDLEYYSQGFSKLEESAFFGEVGYDITDKWSVTVGGRYYQYDLESFSDVDFPL
FDPSFLPVGVSSLESSLRSDFAAGSPNGTERTSQSDEGTLFKFNTSYQFTEDLLGYFTLSEGYRIGNQNGVGVCPAYDPD
DNQQGACALLPGQQFGPNPGDVSTRDESQYLPDTTTNYELGFKSTLAGGRVTLNGAVYYVEWVDPQLTSATINASIPITV
NAEGAESKGVEVSGNWLVSEDFSLRGSYSHSEASLTALAPGLVGTISPPGFGSVLLDGQDGDRLPGSPEDQFSLFGSYVY
DLPSGRTLTFNGGYAWQGDVLSRTGDRGNGLTLDSYGVANVSAVYDAGKWQATLFVNNLLDEYYETGVVSSALTNQVLTD
VDGGPVYTRSYYTYVGAPRAIGIRASYKFGE

Specific function: Not Yet Known. Postulated To Participate In Iron Transport. Outer Membrane Receptor For Colicins Ia And Ib. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 89934; Mature: 89934

Theoretical pI: Translated: 3.93; Mature: 3.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRKHLLMTASAAVMVTGLAMPSQAQEDVESELRVEAVTVTATRRAESVQDIPLNISAVG
CCCHHEEHHHHHHHHEEECCCCCHHHHHHHHHHEEEEEEEEEHHCCCCCCCCCEEEEECC
DQQIEEQGFEELADVLAYVPGINIVDRGARQGNPLIVRGLNADGLGSGDGNNNGGGTVAT
CHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEE
YIGEVPVYLDLKLNDLERVEVLLGPQGTLYGAGTLGGAIRYIPKKPDFAGDTLEVRTEAY
EECCCCEEEEEEECCCCEEEEEECCCCCEEECCCCCCEEEECCCCCCCCCCEEEEEHHHH
QYSEADELSYEAGLTFNKALAPNFAIRGSIDFENDSGFIDYPFVVREIGVSDPDPDFSDP
CCCCHHHCCHHCCCEECCCCCCCEEEEEEEEECCCCCEEECCHHHHCCCCCCCCCCCCCH
ADVAANLRRITDADSEETVSARLAALWEPLPWLDTTLTYYLQQSDIGGRRGSSARSTVPA
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHEEEEEEECCCCCCCCCCCCCCCCC
GDYELGKRVEEPNEITNQLLALEVVADLGFAELTSATGYSRYNDNGQRDQTDLLITLEYS
CCHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEC
YEAFPTFTAFTHEKGQESRINQELRLVSTTEGPLSWIVGAFYNQFEGGGYSAEYTPGYAD
CCCCCCEEEEECCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH
FAGFDRPDDLEYYSQGFSKLEESAFFGEVGYDITDKWSVTVGGRYYQYDLESFSDVDFPL
HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCC
FDPSFLPVGVSSLESSLRSDFAAGSPNGTERTSQSDEGTLFKFNTSYQFTEDLLGYFTLS
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHEEEEC
EGYRIGNQNGVGVCPAYDPDDNQQGACALLPGQQFGPNPGDVSTRDESQYLPDTTTNYEL
CCEEECCCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
GFKSTLAGGRVTLNGAVYYVEWVDPQLTSATINASIPITVNAEGAESKGVEVSGNWLVSE
CCHHCCCCCEEEECCEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCEEECCCEEEEC
DFSLRGSYSHSEASLTALAPGLVGTISPPGFGSVLLDGQDGDRLPGSPEDQFSLFGSYVY
CCCCCCCCCCCCCCCEEECCCCEECCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHEE
DLPSGRTLTFNGGYAWQGDVLSRTGDRGNGLTLDSYGVANVSAVYDAGKWQATLFVNNLL
ECCCCCEEEECCCEEECCCHHHCCCCCCCCEEEECCCCCCEEEEECCCCEEEEHHHHHHH
DEYYETGVVSSALTNQVLTDVDGGPVYTRSYYTYVGAPRAIGIRASYKFGE
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEECCCCC
>Mature Secondary Structure
MIRKHLLMTASAAVMVTGLAMPSQAQEDVESELRVEAVTVTATRRAESVQDIPLNISAVG
CCCHHEEHHHHHHHHEEECCCCCHHHHHHHHHHEEEEEEEEEHHCCCCCCCCCEEEEECC
DQQIEEQGFEELADVLAYVPGINIVDRGARQGNPLIVRGLNADGLGSGDGNNNGGGTVAT
CHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEE
YIGEVPVYLDLKLNDLERVEVLLGPQGTLYGAGTLGGAIRYIPKKPDFAGDTLEVRTEAY
EECCCCEEEEEEECCCCEEEEEECCCCCEEECCCCCCEEEECCCCCCCCCCEEEEEHHHH
QYSEADELSYEAGLTFNKALAPNFAIRGSIDFENDSGFIDYPFVVREIGVSDPDPDFSDP
CCCCHHHCCHHCCCEECCCCCCCEEEEEEEEECCCCCEEECCHHHHCCCCCCCCCCCCCH
ADVAANLRRITDADSEETVSARLAALWEPLPWLDTTLTYYLQQSDIGGRRGSSARSTVPA
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHEEEEEEECCCCCCCCCCCCCCCCC
GDYELGKRVEEPNEITNQLLALEVVADLGFAELTSATGYSRYNDNGQRDQTDLLITLEYS
CCHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEC
YEAFPTFTAFTHEKGQESRINQELRLVSTTEGPLSWIVGAFYNQFEGGGYSAEYTPGYAD
CCCCCCEEEEECCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH
FAGFDRPDDLEYYSQGFSKLEESAFFGEVGYDITDKWSVTVGGRYYQYDLESFSDVDFPL
HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCC
FDPSFLPVGVSSLESSLRSDFAAGSPNGTERTSQSDEGTLFKFNTSYQFTEDLLGYFTLS
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHEEEEC
EGYRIGNQNGVGVCPAYDPDDNQQGACALLPGQQFGPNPGDVSTRDESQYLPDTTTNYEL
CCEEECCCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
GFKSTLAGGRVTLNGAVYYVEWVDPQLTSATINASIPITVNAEGAESKGVEVSGNWLVSE
CCHHCCCCCEEEECCEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCEEECCCEEEEC
DFSLRGSYSHSEASLTALAPGLVGTISPPGFGSVLLDGQDGDRLPGSPEDQFSLFGSYVY
CCCCCCCCCCCCCCCEEECCCCEECCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHEE
DLPSGRTLTFNGGYAWQGDVLSRTGDRGNGLTLDSYGVANVSAVYDAGKWQATLFVNNLL
ECCCCCEEEECCCEEECCCHHHCCCCCCCCEEEECCCCCCEEEEECCCCEEEEHHHHHHH
DEYYETGVVSSALTNQVLTDVDGGPVYTRSYYTYVGAPRAIGIRASYKFGE
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA