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The map label for this gene is yqhC [H]

Identifier: 114799755

GI number: 114799755

Start: 2294646

End: 2295569

Strand: Reverse

Name: yqhC [H]

Synonym: HNE_2199

Alternate gene names: 114799755

Gene position: 2295569-2294646 (Counterclockwise)

Preceding gene: 114798163

Following gene: 114799027

Centisome position: 61.96

GC content: 61.58

Gene sequence:

>924_bases
GTGTCGTCGTCGCTACTTGCTGCAGTCAATGCCTGGATCGAGACACAGGGCGGGGGCGAGGGCCTGTTTCCGACGCAGAT
AGAGTCCGTCCACATCGTGCGTTCGTTCGAGGCCCGTATGCCGATGCGGCAGGTGTACCGCCCGTCTCTGTGCATCGCGC
TGCAGGGCGCGAAGGAAATCCTGTTCGGCGACGATGTCTTCAGGTACGGCGCCATGGAATGCCTCGCTGTCGGACTGGAT
CTGCCTGCGAGTGGACGCGTCGTCGAGGCCAGTTCGGATGTCCCTTACATTGGTATAACCCTCGACCTCGACATGGCGAT
CCTGCGCGACGTGTTGGGATACCTCGAGACGCTCCCCGTGCCAGCGTCCGGATCCGGCCCCTGCCTGTTTGTCGCGACGG
CGGACCAGACGCTCGCCGACTGCCTGCAGCGCCTGATCCGGCTGTTGCAGACGCCGGAGGCTATCCCGATCCTTTATCCC
GCGATCATGCGCGAGATCTGCTACTGGCTGCTGACAAGCCCGAATGGCGGCGAGTTGCGGAATCTGGCGCTGCCCGAAAC
CAACAGCGACCGGGTGGCCCGCGTGATCCACTTACTGCATGCCAACTTCGCCCAGACCCTCCGGGTAGAGCAGTTGGCCG
AGACGGCCCGCATGAGTGCGTCCTCCTTTCATCATCACTTCAAAGCGCTGACGTCGATGACGCCGCTTCAGTATCAGAAG
CAGTTAAGATTGCTTGAGGCCCGGCGGGTGATGGTGACCGAAGCGGCCAGTGTTGCGGAGGCCGCCTATCAGGTGGGCTA
TGAAAGCCCGTCTCAGTTCAGCCGCGAATATTCCCGAATGTTCGGTGTCGCGCCCAAGCAGGACGTTCTGAATCTGCAAC
GTCAGTATAAGGTCTATGCCGACCGGAAGGTCCAAACGGCTTAG

Upstream 100 bases:

>100_bases
GCCCGAAACTGCGAAAAACTTGCCTGATACTGCAGGTGCCGATAAGGTGGATATAGGAGGCCGTGTTTTGCACTGGCCGC
GTAATCCGCCGGAGACCCGT

Downstream 100 bases:

>100_bases
CTTGGGGTCGCAGGACGGCTGTTCATGTGAAGGTGTCCTGCCGGTCCGCAGCATCGGGCAGAAAACTTCCAGCATCCGGC
ATTCATCCGGGCGCAGAGGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MSSSLLAAVNAWIETQGGGEGLFPTQIESVHIVRSFEARMPMRQVYRPSLCIALQGAKEILFGDDVFRYGAMECLAVGLD
LPASGRVVEASSDVPYIGITLDLDMAILRDVLGYLETLPVPASGSGPCLFVATADQTLADCLQRLIRLLQTPEAIPILYP
AIMREICYWLLTSPNGGELRNLALPETNSDRVARVIHLLHANFAQTLRVEQLAETARMSASSFHHHFKALTSMTPLQYQK
QLRLLEARRVMVTEAASVAEAAYQVGYESPSQFSREYSRMFGVAPKQDVLNLQRQYKVYADRKVQTA

Sequences:

>Translated_307_residues
MSSSLLAAVNAWIETQGGGEGLFPTQIESVHIVRSFEARMPMRQVYRPSLCIALQGAKEILFGDDVFRYGAMECLAVGLD
LPASGRVVEASSDVPYIGITLDLDMAILRDVLGYLETLPVPASGSGPCLFVATADQTLADCLQRLIRLLQTPEAIPILYP
AIMREICYWLLTSPNGGELRNLALPETNSDRVARVIHLLHANFAQTLRVEQLAETARMSASSFHHHFKALTSMTPLQYQK
QLRLLEARRVMVTEAASVAEAAYQVGYESPSQFSREYSRMFGVAPKQDVLNLQRQYKVYADRKVQTA
>Mature_306_residues
SSSLLAAVNAWIETQGGGEGLFPTQIESVHIVRSFEARMPMRQVYRPSLCIALQGAKEILFGDDVFRYGAMECLAVGLDL
PASGRVVEASSDVPYIGITLDLDMAILRDVLGYLETLPVPASGSGPCLFVATADQTLADCLQRLIRLLQTPEAIPILYPA
IMREICYWLLTSPNGGELRNLALPETNSDRVARVIHLLHANFAQTLRVEQLAETARMSASSFHHHFKALTSMTPLQYQKQ
LRLLEARRVMVTEAASVAEAAYQVGYESPSQFSREYSRMFGVAPKQDVLNLQRQYKVYADRKVQTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=254, Percent_Identity=38.1889763779528, Blast_Score=159, Evalue=2e-40,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34039; Mature: 33908

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSLLAAVNAWIETQGGGEGLFPTQIESVHIVRSFEARMPMRQVYRPSLCIALQGAKEI
CCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCHHH
LFGDDVFRYGAMECLAVGLDLPASGRVVEASSDVPYIGITLDLDMAILRDVLGYLETLPV
HCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEEEEECCCHHHHHHHHHHHHHCCC
PASGSGPCLFVATADQTLADCLQRLIRLLQTPEAIPILYPAIMREICYWLLTSPNGGELR
CCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
NLALPETNSDRVARVIHLLHANFAQTLRVEQLAETARMSASSFHHHFKALTSMTPLQYQK
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
QLRLLEARRVMVTEAASVAEAAYQVGYESPSQFSREYSRMFGVAPKQDVLNLQRQYKVYA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
DRKVQTA
CCCCCCC
>Mature Secondary Structure 
SSSLLAAVNAWIETQGGGEGLFPTQIESVHIVRSFEARMPMRQVYRPSLCIALQGAKEI
CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCHHH
LFGDDVFRYGAMECLAVGLDLPASGRVVEASSDVPYIGITLDLDMAILRDVLGYLETLPV
HCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEEEEECCCHHHHHHHHHHHHHCCC
PASGSGPCLFVATADQTLADCLQRLIRLLQTPEAIPILYPAIMREICYWLLTSPNGGELR
CCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
NLALPETNSDRVARVIHLLHANFAQTLRVEQLAETARMSASSFHHHFKALTSMTPLQYQK
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
QLRLLEARRVMVTEAASVAEAAYQVGYESPSQFSREYSRMFGVAPKQDVLNLQRQYKVYA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
DRKVQTA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]