| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is tgt [H]
Identifier: 114799701
GI number: 114799701
Start: 1141651
End: 1142790
Strand: Direct
Name: tgt [H]
Synonym: HNE_1130
Alternate gene names: 114799701
Gene position: 1141651-1142790 (Clockwise)
Preceding gene: 114800442
Following gene: 114799307
Centisome position: 30.81
GC content: 64.56
Gene sequence:
>1140_bases ATGGCTACGTTCCCGTTTGAAATTTCCGCCCGTGAGGGTAAGGCGCGCACCGGGCGCCTGAAAACCCCGCGCGGCGACAT CCGCACGCCCGCCTTCATGCCCGTCGGCACCGCCGGCACGGTCAAGGCCCTCTATATGGATCAGGTCCAGGGGGCGGGGG CCGACATCATCCTCGGCAACACCTACCATCTGATGCTCCGCCCCGGCGCCGAGCGCGTGCAACGCCTCGGCGGCCTGCAC AAATTCTCCGGCTGGTCCGGCCCGATGCTGACCGACTCCGGCGGCTTCCAGGTCTGGTCGCTCGCCCAGCTTCGGAAGAT GGACGCAGACGGCGTCACCTTCCAGAGCCATATCGACGGCTCCACCCACCGCCTCACCCCCGCCCGCTCCATCGAAATTC AGGCAGACCTTCTGGGCGCTGACATCTCCATGCAGCTTGATGAGTGCACAAACTTTCCGTGTACGCATGAAGAGGCCGAG CGCAGCCTCGCCCTCTCCCTCAAATGGGGGGAACGCAGCCTCGACGCCTTCGGCGCCCGAGACGCACAAACTCTCTTTGG AATCATTCAAGGCTCAAACTTCCCGGACCTGCGCGAGCGCTCCGCCAAGGGCGTCACTGCCCAAGGCTTCGGCGGCATCG CGCTCGGCGGTCTCGCCGTCGGTGAAGGCCATGACCAGATGTGCGCCACCATCGACATGACGATGCCCCATCTTCCCGAT CACATGCCCCGCTATGTCATGGGCGTCGGCAAACCCATCGACCTCGTCGAAAGCGTTGCCCGCGGGATCGACATGTTCGA CTGTGTCCTGCCTACCCGCTCGGGCCGCCACGGCCAGGCCTGGACCTGGGACGGCCCCCTCAATCTCAACAACGCGAAGT TTGCCGAAGACACGAGCCCGCTCGATCCGGTGATCAACTGCCCGGCCAGCCAGGTCTATTCCCGCGCCTACCTGCATCAC CTGTTCAAGGCCGGCGAATATCTCGGTCCCATGCTCCTCTCCTGGCACAACACCGCCTTCTTCCAGGCCCTGATGGCCGA GATGCGCGCCGCCATCGCCGAAGGCCGCTTCGAAGCCCTGCGCGCAACGCTCAGCGCCGGCTGGGAAAACACGAAGTCAA AACCGAAAGCTGAAAGCTGA
Upstream 100 bases:
>100_bases TGCGCGCCTTCGGCATGCTCATGGCCGCCTGGCAGGTGTTCATGGCGGGGTGATCCGCGCAGCTTGGCTTCCATGGGGCG CTCCCGTATAGGAGCGCCCC
Downstream 100 bases:
>100_bases CTTCAATATGGCGTCATCCCGGAAATCGCGAAGCGATTATCCAGAACCCAGAATGCACGGCTCAACAGCTCGCCAGCCTA CTTCAACTGCTCCAGCGCCT
Product: queuine tRNA-ribosyltransferase
Products: NA
Alternate protein names: Guanine insertion enzyme; tRNA-guanine transglycosylase [H]
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MATFPFEISAREGKARTGRLKTPRGDIRTPAFMPVGTAGTVKALYMDQVQGAGADIILGNTYHLMLRPGAERVQRLGGLH KFSGWSGPMLTDSGGFQVWSLAQLRKMDADGVTFQSHIDGSTHRLTPARSIEIQADLLGADISMQLDECTNFPCTHEEAE RSLALSLKWGERSLDAFGARDAQTLFGIIQGSNFPDLRERSAKGVTAQGFGGIALGGLAVGEGHDQMCATIDMTMPHLPD HMPRYVMGVGKPIDLVESVARGIDMFDCVLPTRSGRHGQAWTWDGPLNLNNAKFAEDTSPLDPVINCPASQVYSRAYLHH LFKAGEYLGPMLLSWHNTAFFQALMAEMRAAIAEGRFEALRATLSAGWENTKSKPKAES
Sequences:
>Translated_379_residues MATFPFEISAREGKARTGRLKTPRGDIRTPAFMPVGTAGTVKALYMDQVQGAGADIILGNTYHLMLRPGAERVQRLGGLH KFSGWSGPMLTDSGGFQVWSLAQLRKMDADGVTFQSHIDGSTHRLTPARSIEIQADLLGADISMQLDECTNFPCTHEEAE RSLALSLKWGERSLDAFGARDAQTLFGIIQGSNFPDLRERSAKGVTAQGFGGIALGGLAVGEGHDQMCATIDMTMPHLPD HMPRYVMGVGKPIDLVESVARGIDMFDCVLPTRSGRHGQAWTWDGPLNLNNAKFAEDTSPLDPVINCPASQVYSRAYLHH LFKAGEYLGPMLLSWHNTAFFQALMAEMRAAIAEGRFEALRATLSAGWENTKSKPKAES >Mature_378_residues ATFPFEISAREGKARTGRLKTPRGDIRTPAFMPVGTAGTVKALYMDQVQGAGADIILGNTYHLMLRPGAERVQRLGGLHK FSGWSGPMLTDSGGFQVWSLAQLRKMDADGVTFQSHIDGSTHRLTPARSIEIQADLLGADISMQLDECTNFPCTHEEAER SLALSLKWGERSLDAFGARDAQTLFGIIQGSNFPDLRERSAKGVTAQGFGGIALGGLAVGEGHDQMCATIDMTMPHLPDH MPRYVMGVGKPIDLVESVARGIDMFDCVLPTRSGRHGQAWTWDGPLNLNNAKFAEDTSPLDPVINCPASQVYSRAYLHHL FKAGEYLGPMLLSWHNTAFFQALMAEMRAAIAEGRFEALRATLSAGWENTKSKPKAES
Specific function: Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hyper
COG id: COG0343
COG function: function code J; Queuine/archaeosine tRNA-ribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the queuine tRNA-ribosyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI13654276, Length=344, Percent_Identity=43.0232558139535, Blast_Score=279, Evalue=3e-75, Organism=Escherichia coli, GI1786607, Length=358, Percent_Identity=51.3966480446927, Blast_Score=362, Evalue=1e-101, Organism=Caenorhabditis elegans, GI17544680, Length=354, Percent_Identity=42.6553672316384, Blast_Score=264, Evalue=7e-71, Organism=Drosophila melanogaster, GI19920510, Length=364, Percent_Identity=42.5824175824176, Blast_Score=286, Evalue=2e-77, Organism=Drosophila melanogaster, GI21355311, Length=247, Percent_Identity=24.2914979757085, Blast_Score=80, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004803 - InterPro: IPR002616 [H]
Pfam domain/function: PF01702 TGT [H]
EC number: =2.4.2.29 [H]
Molecular weight: Translated: 41250; Mature: 41119
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATFPFEISAREGKARTGRLKTPRGDIRTPAFMPVGTAGTVKALYMDQVQGAGADIILGN CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCEEEECC TYHLMLRPGAERVQRLGGLHKFSGWSGPMLTDSGGFQVWSLAQLRKMDADGVTFQSHIDG EEEEEECCCHHHHHHHCCCCCCCCCCCCEEECCCCCEEHHHHHHHHCCCCCCEEECCCCC STHRLTPARSIEIQADLLGADISMQLDECTNFPCTHEEAERSLALSLKWGERSLDAFGAR CCEECCCCCEEEEEEEEECCCCEEEHHHHCCCCCCHHHHCCEEEEEEECCCCCHHHHCCC DAQTLFGIIQGSNFPDLRERSAKGVTAQGFGGIALGGLAVGEGHDQMCATIDMTMPHLPD CHHHHHHHHCCCCCCHHHHHCCCCCEECCCCCEEECCEEECCCCCCEEEEEECCCCCCCC HMPRYVMGVGKPIDLVESVARGIDMFDCVLPTRSGRHGQAWTWDGPLNLNNAKFAEDTSP HHHHHHHHCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC LDPVINCPASQVYSRAYLHHLFKAGEYLGPMLLSWHNTAFFQALMAEMRAAIAEGRFEAL CCHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH RATLSAGWENTKSKPKAES HHHHHHCCCCCCCCCCCCC >Mature Secondary Structure ATFPFEISAREGKARTGRLKTPRGDIRTPAFMPVGTAGTVKALYMDQVQGAGADIILGN CCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCEEEECC TYHLMLRPGAERVQRLGGLHKFSGWSGPMLTDSGGFQVWSLAQLRKMDADGVTFQSHIDG EEEEEECCCHHHHHHHCCCCCCCCCCCCEEECCCCCEEHHHHHHHHCCCCCCEEECCCCC STHRLTPARSIEIQADLLGADISMQLDECTNFPCTHEEAERSLALSLKWGERSLDAFGAR CCEECCCCCEEEEEEEEECCCCEEEHHHHCCCCCCHHHHCCEEEEEEECCCCCHHHHCCC DAQTLFGIIQGSNFPDLRERSAKGVTAQGFGGIALGGLAVGEGHDQMCATIDMTMPHLPD CHHHHHHHHCCCCCCHHHHHCCCCCEECCCCCEEECCEEECCCCCCEEEEEECCCCCCCC HMPRYVMGVGKPIDLVESVARGIDMFDCVLPTRSGRHGQAWTWDGPLNLNNAKFAEDTSP HHHHHHHHCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC LDPVINCPASQVYSRAYLHHLFKAGEYLGPMLLSWHNTAFFQALMAEMRAAIAEGRFEAL CCHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH RATLSAGWENTKSKPKAES HHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11259647 [H]