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The map label for this gene is pdtaR [H]

Identifier: 114799689

GI number: 114799689

Start: 1654802

End: 1655362

Strand: Reverse

Name: pdtaR [H]

Synonym: HNE_1618

Alternate gene names: 114799689

Gene position: 1655362-1654802 (Counterclockwise)

Preceding gene: 114797678

Following gene: 114797594

Centisome position: 44.68

GC content: 61.32

Gene sequence:

>561_bases
GTGATCGCCCATCGCGAAGCGGACAGGGCACAGATCATGGCGGGCCTCCCTCAAGGCGCGATTGTTCATCTGGCTCCTGC
TGAAGAGAACCGGGCCTTGCCGGCGCAGGTTGAAACCGTTCGGCCGGACATGCTGATCGGCGCGTGTGAGGTGCCCGATG
ATACGTTGCTGGCCGCCTTTCGCATGATTTCCGAGGCGTCACCCCTGCCGGTTGTTCTGTTTACGGAGAAGGACCGAACA
CAGATGGCGCACCGCGCGCTCGCCGCCGGTGTGAGCGCTTATATTGTCAACGGACTGACCGCCGAGCGCATTCTGCCGGT
AACACAAGTTGCCAGAGAGCGGTTCAGAATGACGGCGGCCCTGCATCAGGAACTCAGGAAATCTCGGGAAGAGCTTGCGG
CACGCAAGGTGATTGAGCGCGCAAAAGGCCTGCTGATGGAGCGGCGGGGTATGAGCGAACAGGCAGCCTATGAGGCGATG
CGGCGCCTGGCCATGAGCAAAGCTCGCCCCCTGAGAGAGATTGCGGAGCTCATTCTCTCGGTATCCGACATTCTGCCCTG
A

Upstream 100 bases:

>100_bases
GCCCGCCCCGCCGGAATTAGGGAGGGCCCGAGGCGTGTCAGACGGGTCTTTCAATCTTCCCTCTACGGACGCCAACCCAG
CCTCGCAGGGGGTCTATCTC

Downstream 100 bases:

>100_bases
TTGCTACAGATACGGCCTGCGCGAAATTCGTGCGGCAGTGCAACATTACTGGGCCGCGATGATCGAAGCGACAAAATGTT
GGCTCAAAATCATTGCGGCT

Product: ANTAR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MIAHREADRAQIMAGLPQGAIVHLAPAEENRALPAQVETVRPDMLIGACEVPDDTLLAAFRMISEASPLPVVLFTEKDRT
QMAHRALAAGVSAYIVNGLTAERILPVTQVARERFRMTAALHQELRKSREELAARKVIERAKGLLMERRGMSEQAAYEAM
RRLAMSKARPLREIAELILSVSDILP

Sequences:

>Translated_186_residues
MIAHREADRAQIMAGLPQGAIVHLAPAEENRALPAQVETVRPDMLIGACEVPDDTLLAAFRMISEASPLPVVLFTEKDRT
QMAHRALAAGVSAYIVNGLTAERILPVTQVARERFRMTAALHQELRKSREELAARKVIERAKGLLMERRGMSEQAAYEAM
RRLAMSKARPLREIAELILSVSDILP
>Mature_186_residues
MIAHREADRAQIMAGLPQGAIVHLAPAEENRALPAQVETVRPDMLIGACEVPDDTLLAAFRMISEASPLPVVLFTEKDRT
QMAHRALAAGVSAYIVNGLTAERILPVTQVARERFRMTAALHQELRKSREELAARKVIERAKGLLMERRGMSEQAAYEAM
RRLAMSKARPLREIAELILSVSDILP

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 20599; Mature: 20599

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAHREADRAQIMAGLPQGAIVHLAPAEENRALPAQVETVRPDMLIGACEVPDDTLLAAF
CCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCEEECCCCCCHHHHHHH
RMISEASPLPVVLFTEKDRTQMAHRALAAGVSAYIVNGLTAERILPVTQVARERFRMTAA
HHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LHQELRKSREELAARKVIERAKGLLMERRGMSEQAAYEAMRRLAMSKARPLREIAELILS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VSDILP
HHHHCC
>Mature Secondary Structure
MIAHREADRAQIMAGLPQGAIVHLAPAEENRALPAQVETVRPDMLIGACEVPDDTLLAAF
CCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCEEECCCCCCHHHHHHH
RMISEASPLPVVLFTEKDRTQMAHRALAAGVSAYIVNGLTAERILPVTQVARERFRMTAA
HHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LHQELRKSREELAARKVIERAKGLLMERRGMSEQAAYEAMRRLAMSKARPLREIAELILS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VSDILP
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]