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The map label for this gene is ydjX [C]

Identifier: 114799681

GI number: 114799681

Start: 408888

End: 409640

Strand: Reverse

Name: ydjX [C]

Synonym: HNE_0409

Alternate gene names: 114799681

Gene position: 409640-408888 (Counterclockwise)

Preceding gene: 114798537

Following gene: 114800416

Centisome position: 11.06

GC content: 66.0

Gene sequence:

>753_bases
GTGACCGACCTTCCGCCCCCGGCGAACGACATCGCGCCCAAGCGCCCGGCGCCCCTCTGGCGCCGCCTCTGGCCGGTTTA
CATCATCCTCGCCGGACTTGGCCTCGCCCTCTCGCAGGGCTGGCACGAATATCTGACGCTCGAGTCGCTGTCGGCCAATG
CCGTCGCGCTCGACGCGATGGTGCGCGAAAACCTGCTCCTGGCGCTGGCCGCCTATGTGCTCGTCTATGCGGCGGCGACG
ACGTTCATGGTGCCAGGCAGCGCGCTGACCATCGGGGGCGGGTTTCTCTTCGGCCTGGCGCTGGGGACGCCGGCGACCGT
GATCGGGGCGACCATCGGCGCCTCGATCCTGTTCTTTGCGTCCAAGACATCCATCGGCGCGGTGCTGCGCGATGTGGCCG
GGCCGTTCCTCGGCAAGATGCAGGCAGGCTTTGCCGAAAGTCCCTTCTCCTACATGTTTGCCCTGCGCCTCATCCCGCTC
TTCCCGTTTGCAGCGGTGAACATTGCGCCGGCCCTGCTGGGCGCGAAGTACCGCGATTACCTGATCACCACCTTCCTCGG
TATCATCCCCGGCACGCTGGCCTACACCTGGATCGGCGCGGCGGTGAAAGGCACCCTGCTGGAAGGCGGCACGCCGGACA
TCGGCTCGCTCGCCTCGAATTTCCTGCCTGCCTTCATTGCGCTCGGCGTGGTGTCGCTGATCCCGGCAGTCTACAAGAAA
CTTTTCCCCAAGAAGGCGCCTGCCAATGTCTGA

Upstream 100 bases:

>100_bases
TCCCTCAAAAAACTCCAACGATTCCTCCAACGAGGCGCCGAAAAACACCAAGAAAACTCCAACGGCGCAGACCAAACCTC
CAACGAAAAGAGCCCCAGAC

Downstream 100 bases:

>100_bases
ACTCCGTACCCTGAAGGCTGATCTGGCCGTGATCGGCGCAGGCTCCGCCGGCCTCTCTGCGGCAGCGGGCGCTGCGATGC
TGGGCCTCAAGGTGGTCCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MTDLPPPANDIAPKRPAPLWRRLWPVYIILAGLGLALSQGWHEYLTLESLSANAVALDAMVRENLLLALAAYVLVYAAAT
TFMVPGSALTIGGGFLFGLALGTPATVIGATIGASILFFASKTSIGAVLRDVAGPFLGKMQAGFAESPFSYMFALRLIPL
FPFAAVNIAPALLGAKYRDYLITTFLGIIPGTLAYTWIGAAVKGTLLEGGTPDIGSLASNFLPAFIALGVVSLIPAVYKK
LFPKKAPANV

Sequences:

>Translated_250_residues
MTDLPPPANDIAPKRPAPLWRRLWPVYIILAGLGLALSQGWHEYLTLESLSANAVALDAMVRENLLLALAAYVLVYAAAT
TFMVPGSALTIGGGFLFGLALGTPATVIGATIGASILFFASKTSIGAVLRDVAGPFLGKMQAGFAESPFSYMFALRLIPL
FPFAAVNIAPALLGAKYRDYLITTFLGIIPGTLAYTWIGAAVKGTLLEGGTPDIGSLASNFLPAFIALGVVSLIPAVYKK
LFPKKAPANV
>Mature_249_residues
TDLPPPANDIAPKRPAPLWRRLWPVYIILAGLGLALSQGWHEYLTLESLSANAVALDAMVRENLLLALAAYVLVYAAATT
FMVPGSALTIGGGFLFGLALGTPATVIGATIGASILFFASKTSIGAVLRDVAGPFLGKMQAGFAESPFSYMFALRLIPLF
PFAAVNIAPALLGAKYRDYLITTFLGIIPGTLAYTWIGAAVKGTLLEGGTPDIGSLASNFLPAFIALGVVSLIPAVYKKL
FPKKAPANV

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Escherichia coli, GI87081964, Length=146, Percent_Identity=30.8219178082192, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 26183; Mature: 26052

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCCCCCC
>Mature Secondary Structure 
TDLPPPANDIAPKRPAPLWRRLWPVYIILAGLGLALSQGWHEYLTLESLSANAVALDAM
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
VRENLLLALAAYVLVYAAATTFMVPGSALTIGGGFLFGLALGTPATVIGATIGASILFFA
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SKTSIGAVLRDVAGPFLGKMQAGFAESPFSYMFALRLIPLFPFAAVNIAPALLGAKYRDY
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LITTFLGIIPGTLAYTWIGAAVKGTLLEGGTPDIGSLASNFLPAFIALGVVSLIPAVYKK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFPKKAPANV
HCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]