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The map label for this gene is yddU [C]

Identifier: 114799639

GI number: 114799639

Start: 1055822

End: 1056715

Strand: Direct

Name: yddU [C]

Synonym: HNE_1047

Alternate gene names: 114799639

Gene position: 1055822-1056715 (Clockwise)

Preceding gene: 114800424

Following gene: 114800284

Centisome position: 28.5

GC content: 66.89

Gene sequence:

>894_bases
ATGGTCGAGGGGCTGAGCCGTGGCCGGCTGGCCAAGGCGCTGTCGACCGGCGAGGGCGGCCCGGTGCGCTGCGGCCTGCG
CCTCTCCAATGGCCGCGACATCCACTTCGTCGGCGCCTTCGTGACGGACAGTGAAGCACGCGGCATGCTGCTGTCGGGCG
AGACCTTCCCGGAGATCGACCCGAGCGACATGCGGCCCGGCCCGGACCTGATGCCGGTCTATCAACCGATCATCTCTCTG
CGCGACGGCAGCGTCGTTGGCTTTGAGGCGCTCGCGCGCTGGGACGGGATGGAAGTGAACGCTCCGCCGAGCCGGTATGA
GGATCAGGCGCTGGCCTCCAACATGCTGATCCGCTCGGCCGAGACCCTGTCGAACCTGCGCGAAGGGGCCAAGCGCGACG
ACATCTTCATGCATGTGAACCTCACCGCGCGGGAGCTGACCAAGAGCACGCTGCCGGCGCTGATCGAGGCGTTGATGAAT
GGCTATAATCTGCCCGAGCGGGCGCTGCGGATGGAGCTGACCGAGCAGGCGGCCCTGCGCGACGAAACCCAGTCTCTGGC
CGCTGCAATGGCGCTGAAAGCCGTGGGCGCGGGGCTGGTGCTGGACGATTTCGGCACGGGGCATTCTTCCTTTGCCTGGC
TGGCGGACCTGCCATTTGACAGCCTCAAGATCGATCATGGCCTGACCAGCCGCCTTGGCCAGCAGCGCAATGACACGATC
CTCTCCACCATCACGCTGCTGGCGAGCCGGCTGGGCATGTCCTCGACCGCCGAGGGCGTGGAGAAGCGCGAAGACGCCAG
CCGCCTGCGCGCGCTGGGCTTTGATCACGCACAGGGCTATGCCTTTGCCCGGCCGATGGACGGGGCCAAGGCGCTTGCCT
TCCTGAAGGGATAA

Upstream 100 bases:

>100_bases
GCACTGGCGCGGCGAGGCAGGCCGCCTCGTCATCGAGGCGCCCACCGGCACGCTGCTATCAGACCTTTCGGGGGACTGGT
CGCTCGACGCGCTGGAGAAG

Downstream 100 bases:

>100_bases
CCAGAATGAGCCAGGCCACAGCTGAACACCGCGCGATTGCCGCCTACCTGACCGATGCGTTTGGCGGCGAGATCAGGGTG
ATGGGGCAGGGCTATCATGA

Product: EAL domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MVEGLSRGRLAKALSTGEGGPVRCGLRLSNGRDIHFVGAFVTDSEARGMLLSGETFPEIDPSDMRPGPDLMPVYQPIISL
RDGSVVGFEALARWDGMEVNAPPSRYEDQALASNMLIRSAETLSNLREGAKRDDIFMHVNLTARELTKSTLPALIEALMN
GYNLPERALRMELTEQAALRDETQSLAAAMALKAVGAGLVLDDFGTGHSSFAWLADLPFDSLKIDHGLTSRLGQQRNDTI
LSTITLLASRLGMSSTAEGVEKREDASRLRALGFDHAQGYAFARPMDGAKALAFLKG

Sequences:

>Translated_297_residues
MVEGLSRGRLAKALSTGEGGPVRCGLRLSNGRDIHFVGAFVTDSEARGMLLSGETFPEIDPSDMRPGPDLMPVYQPIISL
RDGSVVGFEALARWDGMEVNAPPSRYEDQALASNMLIRSAETLSNLREGAKRDDIFMHVNLTARELTKSTLPALIEALMN
GYNLPERALRMELTEQAALRDETQSLAAAMALKAVGAGLVLDDFGTGHSSFAWLADLPFDSLKIDHGLTSRLGQQRNDTI
LSTITLLASRLGMSSTAEGVEKREDASRLRALGFDHAQGYAFARPMDGAKALAFLKG
>Mature_297_residues
MVEGLSRGRLAKALSTGEGGPVRCGLRLSNGRDIHFVGAFVTDSEARGMLLSGETFPEIDPSDMRPGPDLMPVYQPIISL
RDGSVVGFEALARWDGMEVNAPPSRYEDQALASNMLIRSAETLSNLREGAKRDDIFMHVNLTARELTKSTLPALIEALMN
GYNLPERALRMELTEQAALRDETQSLAAAMALKAVGAGLVLDDFGTGHSSFAWLADLPFDSLKIDHGLTSRLGQQRNDTI
LSTITLLASRLGMSSTAEGVEKREDASRLRALGFDHAQGYAFARPMDGAKALAFLKG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=224, Percent_Identity=31.6964285714286, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788502, Length=253, Percent_Identity=29.6442687747036, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787541, Length=233, Percent_Identity=31.3304721030043, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87081743, Length=230, Percent_Identity=32.1739130434783, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87081845, Length=232, Percent_Identity=28.448275862069, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1790496, Length=221, Percent_Identity=30.316742081448, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87081980, Length=232, Percent_Identity=33.1896551724138, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786507, Length=235, Percent_Identity=25.531914893617, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787055, Length=230, Percent_Identity=28.2608695652174, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788849, Length=148, Percent_Identity=31.0810810810811, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI87082096, Length=148, Percent_Identity=31.0810810810811, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI226510982, Length=153, Percent_Identity=31.3725490196078, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 32079; Mature: 32079

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEGLSRGRLAKALSTGEGGPVRCGLRLSNGRDIHFVGAFVTDSEARGMLLSGETFPEID
CCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCEEECCCCCCCCC
PSDMRPGPDLMPVYQPIISLRDGSVVGFEALARWDGMEVNAPPSRYEDQALASNMLIRSA
CCCCCCCCCCHHHHHHHHHCCCCCEEHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
ETLSNLREGAKRDDIFMHVNLTARELTKSTLPALIEALMNGYNLPERALRMELTEQAALR
HHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
DETQSLAAAMALKAVGAGLVLDDFGTGHSSFAWLADLPFDSLKIDHGLTSRLGQQRNDTI
HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEECCCCCCEEECCCHHHHHCCCCCHHH
LSTITLLASRLGMSSTAEGVEKREDASRLRALGFDHAQGYAFARPMDGAKALAFLKG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHEECC
>Mature Secondary Structure
MVEGLSRGRLAKALSTGEGGPVRCGLRLSNGRDIHFVGAFVTDSEARGMLLSGETFPEID
CCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCCEEECCCCCCCCC
PSDMRPGPDLMPVYQPIISLRDGSVVGFEALARWDGMEVNAPPSRYEDQALASNMLIRSA
CCCCCCCCCCHHHHHHHHHCCCCCEEHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
ETLSNLREGAKRDDIFMHVNLTARELTKSTLPALIEALMNGYNLPERALRMELTEQAALR
HHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
DETQSLAAAMALKAVGAGLVLDDFGTGHSSFAWLADLPFDSLKIDHGLTSRLGQQRNDTI
HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEECCCCCCEEECCCHHHHHCCCCCHHH
LSTITLLASRLGMSSTAEGVEKREDASRLRALGFDHAQGYAFARPMDGAKALAFLKG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]