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The map label for this gene is clpS

Identifier: 114799620

GI number: 114799620

Start: 1038725

End: 1039081

Strand: Direct

Name: clpS

Synonym: HNE_1029

Alternate gene names: 114799620

Gene position: 1038725-1039081 (Clockwise)

Preceding gene: 114797951

Following gene: 114797928

Centisome position: 28.04

GC content: 57.14

Gene sequence:

>357_bases
ATGAACGGATCATCGAACTCCGGTAGCCCAGGGGGCGGCCAGACGGGGGACGATGATGGCACAGGGTTTGACCTGGCCAC
CGAAACGCGGATCAAAACCAAGAAGCCGTCGCTCTACCGGGTTCTGCTTCTCAATGATGATTACACGCCGATGGAATTCG
TCGTGTTCATCCTCGAGCGTTTCTTTAATCGCTCCCGCGAGCAGGCGACCCGGATCATGCTTCACGTCCACCAGAAGGGT
GTTGGGCTGTGCGGGGTCTATACATACGAGGTTGCCGAGACGAAGGTAGCCCAGGTGCTCGACCTTGCCCGCCGCCATGA
ACATCCTCTCCAATGCGTCATGGAGAAAGAAGACTAA

Upstream 100 bases:

>100_bases
GAAAGCGTGCAGAGCTGGATATAAGCGGTAAATGCATCTTCAATCTCGCACAGGAACGTATATCTTGAACACCATGAGCA
GCGATTTCGATCAGGTCCGC

Downstream 100 bases:

>100_bases
GCCACTATATACTCATCATAAGCCCCGTTCACACACACCCCCGGAAGGCTACCTCCTTTGCCACGTCTCTCACCGTCTCT
CGAAACCGCCCTCGAAAAGG

Product: ATP-dependent Clp protease, adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MNGSSNSGSPGGGQTGDDDGTGFDLATETRIKTKKPSLYRVLLLNDDYTPMEFVVFILERFFNRSREQATRIMLHVHQKG
VGLCGVYTYEVAETKVAQVLDLARRHEHPLQCVMEKED

Sequences:

>Translated_118_residues
MNGSSNSGSPGGGQTGDDDGTGFDLATETRIKTKKPSLYRVLLLNDDYTPMEFVVFILERFFNRSREQATRIMLHVHQKG
VGLCGVYTYEVAETKVAQVLDLARRHEHPLQCVMEKED
>Mature_118_residues
MNGSSNSGSPGGGQTGDDDGTGFDLATETRIKTKKPSLYRVLLLNDDYTPMEFVVFILERFFNRSREQATRIMLHVHQKG
VGLCGVYTYEVAETKVAQVLDLARRHEHPLQCVMEKED

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=101, Percent_Identity=52.4752475247525, Blast_Score=114, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_HYPNA (Q0C3E2)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_759751.1
- ProteinModelPortal:   Q0C3E2
- SMR:   Q0C3E2
- STRING:   Q0C3E2
- GeneID:   4290260
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_1029
- NMPDR:   fig|228405.5.peg.1002
- TIGR:   HNE_1029
- eggNOG:   COG2127
- HOGENOM:   HBG644923
- OMA:   FVIHILE
- PhylomeDB:   Q0C3E2
- BioCyc:   HNEP81032:HNE_1029-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 13264; Mature: 13264

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGSSNSGSPGGGQTGDDDGTGFDLATETRIKTKKPSLYRVLLLNDDYTPMEFVVFILER
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
FFNRSREQATRIMLHVHQKGVGLCGVYTYEVAETKVAQVLDLARRHEHPLQCVMEKED
HHCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
>Mature Secondary Structure
MNGSSNSGSPGGGQTGDDDGTGFDLATETRIKTKKPSLYRVLLLNDDYTPMEFVVFILER
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
FFNRSREQATRIMLHVHQKGVGLCGVYTYEVAETKVAQVLDLARRHEHPLQCVMEKED
HHCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA