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The map label for this gene is 114799531

Identifier: 114799531

GI number: 114799531

Start: 1527234

End: 1527800

Strand: Direct

Name: 114799531

Synonym: HNE_1495

Alternate gene names: NA

Gene position: 1527234-1527800 (Clockwise)

Preceding gene: 114797657

Following gene: 114800033

Centisome position: 41.22

GC content: 60.32

Gene sequence:

>567_bases
ATGTCCAGAGCGATCAGAAAAGCGGTTCCGGATCAGGCCCAGCGGGACCAAAGCTGCCGGCACAAGCTGTCCGCCGAAGC
CTATGACCTGCTGCGCGCCATCGCATCGCGACAACTGCGGGGGCAGAGGCCAGGCGCGACCCTGAACACCACGCTTGTTG
TCCATGAAGCCTGGATGAAGCTGTCCTACGACGAAAACCGGCAGTTCGTTGACGAGGATCATTTCCTCGCCACGGCTTCA
AGGGCGATGCGCCAGATCCTTGTTGATCATGTCCGCCGCAAGCTGGCGGAGAAGAGAGGCGCTGGCGCTGTTCATGTGCC
GATCGAGGGGCAGCAGGTCGCTGAACCCGATGCAGAAGTCCAACTCATGGATGTAGAGGCTGCGCTGGTTCGACTGGCGC
AGCACGCCCCCGAACTTGAGCAGATTGTCGAGTGCCGCTTTTTTGCGGGTTACACCGTCAACGAGACGGCCCGAATTCTT
GGGCGGCCGGTTCGTTCAGTCGAACGCGACTGGTCCCGAGCGAAGACTTACCTTGCTGCCTATCTGAAGTCGGAGGCGAA
CAACTGA

Upstream 100 bases:

>100_bases
GGACAGTTCAGATCACAACCGCTGTTCTGGACTTGCGTGCGTAAGCCACGGATACTCTCTGATACACACAAGGGTTTTTA
TCGGTTGAGTGGAGTGGGAC

Downstream 100 bases:

>100_bases
GTGGCGGAATTCGAGGCCCCGTGCCGTTAAGCACTGTGCTGCACGGAGAGCAGCAGAATTCAGTGCAGCGCAGGGATTGG
CGCAGTTCGAGGGTGGAGCG

Product: ECF sigma factor family protein

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma Factor ECF-Like Family Protein; ECF Sigma Factor Family Protein; RNA Polymerase Sigma Factor; Sigma Factor; Extracytoplasmic Sigma Factor ECF; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-E Factor; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MSRAIRKAVPDQAQRDQSCRHKLSAEAYDLLRAIASRQLRGQRPGATLNTTLVVHEAWMKLSYDENRQFVDEDHFLATAS
RAMRQILVDHVRRKLAEKRGAGAVHVPIEGQQVAEPDAEVQLMDVEAALVRLAQHAPELEQIVECRFFAGYTVNETARIL
GRPVRSVERDWSRAKTYLAAYLKSEANN

Sequences:

>Translated_188_residues
MSRAIRKAVPDQAQRDQSCRHKLSAEAYDLLRAIASRQLRGQRPGATLNTTLVVHEAWMKLSYDENRQFVDEDHFLATAS
RAMRQILVDHVRRKLAEKRGAGAVHVPIEGQQVAEPDAEVQLMDVEAALVRLAQHAPELEQIVECRFFAGYTVNETARIL
GRPVRSVERDWSRAKTYLAAYLKSEANN
>Mature_187_residues
SRAIRKAVPDQAQRDQSCRHKLSAEAYDLLRAIASRQLRGQRPGATLNTTLVVHEAWMKLSYDENRQFVDEDHFLATASR
AMRQILVDHVRRKLAEKRGAGAVHVPIEGQQVAEPDAEVQLMDVEAALVRLAQHAPELEQIVECRFFAGYTVNETARILG
RPVRSVERDWSRAKTYLAAYLKSEANN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21303; Mature: 21172

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRAIRKAVPDQAQRDQSCRHKLSAEAYDLLRAIASRQLRGQRPGATLNTTLVVHEAWMK
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
LSYDENRQFVDEDHFLATASRAMRQILVDHVRRKLAEKRGAGAVHVPIEGQQVAEPDAEV
HCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCE
QLMDVEAALVRLAQHAPELEQIVECRFFAGYTVNETARILGRPVRSVERDWSRAKTYLAA
EEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLKSEANN
HHHHHCCC
>Mature Secondary Structure 
SRAIRKAVPDQAQRDQSCRHKLSAEAYDLLRAIASRQLRGQRPGATLNTTLVVHEAWMK
CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
LSYDENRQFVDEDHFLATASRAMRQILVDHVRRKLAEKRGAGAVHVPIEGQQVAEPDAEV
HCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCE
QLMDVEAALVRLAQHAPELEQIVECRFFAGYTVNETARILGRPVRSVERDWSRAKTYLAA
EEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLKSEANN
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA