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The map label for this gene is yhcZ [H]

Identifier: 114799510

GI number: 114799510

Start: 1293719

End: 1294360

Strand: Reverse

Name: yhcZ [H]

Synonym: HNE_1264

Alternate gene names: 114799510

Gene position: 1294360-1293719 (Counterclockwise)

Preceding gene: 114797499

Following gene: 114797551

Centisome position: 34.94

GC content: 64.33

Gene sequence:

>642_bases
GTGAAGAGCCTCCTGATCCTGGAAGACATTGCGGAAACCCGCGCATGGCTTTGCGAGATCGCGCGCGAGGCATTTCCCGG
TTGCCTGATCCATGAGGAAGGCAGCGTGCGCGGAGGCGTTACCGCAGCCACAGGCGCAAAGTTCGACCTGGCGATGCTCG
ACCTTGGCCTGCCGGACGGCTCGGGCCTCGATGTGCTGCGCAAGGTGAAACAGGAAAACCCCGATACGATCTGCGTCATC
ACAACCGTGATGGGCGATGATGCCTGGATCGTCGGCGCGCTGTCAGCCGGCGCCAATGGCTACCTCCTGAAGGATCAACC
CCAGGATACCCTCATCCGCCAGCTCCGTCAGATTGCGGACGGTGTGCCCGCTCTCTCTCCGTCCATCGCCCGGCGCATCA
TGGATCATTTCCGCCTCACCGGCCCGGCCGCGCCCGATGATGATCTCACGGCCCGCGAGCGTGACGTACTTGCCCTCATC
GGCCGGGGCATGCGCAATGGCGAAGTCGCCCGCGCGCTGGACCTCAGCGAAAACACCGTCGCCAGCTACATCAAGGGTAT
CTACCGCAAACTCGGCATTTCCTCCCGCGCCGAAGCCTCCTGGCACGCCACCCGGATGGGCCTGACCACCGACCGGACCT
GA

Upstream 100 bases:

>100_bases
GTGGGTCGGCAACACGGCATATTGGAGGTAGTATGACATTCTATCCCCAACGCGCCTCAACAGAAGGCGCCTTTGTACCC
CGCTAGGAAGTGAAGAACCC

Downstream 100 bases:

>100_bases
CCGGCCTACTCCGCCGCCATCTCGAACACCGGAATACGCGCGGCGAGGCACGTGCCCTCCCCGCCCTCCAGCGAAATATC
GCCGCCGAAGCTCTCCACGC

Product: putative DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MKSLLILEDIAETRAWLCEIAREAFPGCLIHEEGSVRGGVTAATGAKFDLAMLDLGLPDGSGLDVLRKVKQENPDTICVI
TTVMGDDAWIVGALSAGANGYLLKDQPQDTLIRQLRQIADGVPALSPSIARRIMDHFRLTGPAAPDDDLTARERDVLALI
GRGMRNGEVARALDLSENTVASYIKGIYRKLGISSRAEASWHATRMGLTTDRT

Sequences:

>Translated_213_residues
MKSLLILEDIAETRAWLCEIAREAFPGCLIHEEGSVRGGVTAATGAKFDLAMLDLGLPDGSGLDVLRKVKQENPDTICVI
TTVMGDDAWIVGALSAGANGYLLKDQPQDTLIRQLRQIADGVPALSPSIARRIMDHFRLTGPAAPDDDLTARERDVLALI
GRGMRNGEVARALDLSENTVASYIKGIYRKLGISSRAEASWHATRMGLTTDRT
>Mature_213_residues
MKSLLILEDIAETRAWLCEIAREAFPGCLIHEEGSVRGGVTAATGAKFDLAMLDLGLPDGSGLDVLRKVKQENPDTICVI
TTVMGDDAWIVGALSAGANGYLLKDQPQDTLIRQLRQIADGVPALSPSIARRIMDHFRLTGPAAPDDDLTARERDVLALI
GRGMRNGEVARALDLSENTVASYIKGIYRKLGISSRAEASWHATRMGLTTDRT

Specific function: Member of the two-component regulatory system yhcY/yhcZ [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=176, Percent_Identity=30.6818181818182, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1787473, Length=208, Percent_Identity=31.7307692307692, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788222, Length=167, Percent_Identity=26.3473053892216, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790102, Length=170, Percent_Identity=30.5882352941176, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786747, Length=151, Percent_Identity=29.1390728476821, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22999; Mature: 22999

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLLILEDIAETRAWLCEIAREAFPGCLIHEEGSVRGGVTAATGAKFDLAMLDLGLPDG
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEECCCCCEEEEEEEECCCCC
SGLDVLRKVKQENPDTICVITTVMGDDAWIVGALSAGANGYLLKDQPQDTLIRQLRQIAD
CCHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEECCCCCCEEECCCCHHHHHHHHHHHHC
GVPALSPSIARRIMDHFRLTGPAAPDDDLTARERDVLALIGRGMRNGEVARALDLSENTV
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCHHHH
ASYIKGIYRKLGISSRAEASWHATRMGLTTDRT
HHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MKSLLILEDIAETRAWLCEIAREAFPGCLIHEEGSVRGGVTAATGAKFDLAMLDLGLPDG
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEECCCCCEEEEEEEECCCCC
SGLDVLRKVKQENPDTICVITTVMGDDAWIVGALSAGANGYLLKDQPQDTLIRQLRQIAD
CCHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEECCCCCCEEECCCCHHHHHHHHHHHHC
GVPALSPSIARRIMDHFRLTGPAAPDDDLTARERDVLALIGRGMRNGEVARALDLSENTV
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCHHHH
ASYIKGIYRKLGISSRAEASWHATRMGLTTDRT
HHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]