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The map label for this gene is yncD [H]

Identifier: 114799503

GI number: 114799503

Start: 855275

End: 857278

Strand: Direct

Name: yncD [H]

Synonym: HNE_0836

Alternate gene names: 114799503

Gene position: 855275-857278 (Clockwise)

Preceding gene: 114800502

Following gene: 114798093

Centisome position: 23.08

GC content: 63.17

Gene sequence:

>2004_bases
ATGAAAACCAGATTCAAACGGGGCTCCGCCGTGAGCCTCACTGCGCTGTCGCTTGCTTTCGGGGCTATGTTGCCCGCCTT
TGCCGAAGACACGCTGAAAATCGAGGAGACGATCATCGTCACCTCCAGCGCGCGCGCCGTCGATGCGATGGCGCAGGCCG
CCGCGACGCCGGGCGGCACCGATGTCATCACCCATGAAGACTATGCCGACCGGTTCCTCGTCTCGATGCGCGACACGCTC
GCCTTTTCGCCGGGCGTCTACACCCAGCCGCGCTATGGCCAGGAAGTGCGCATCTCCATTCGCGGCTCTGGCATCAGCCG
GGGCTTTCACATGCGCGGCCTGACGCTGCTTCAGGACGGCGCGCCGATAAACCTCGCCGATGACAATGGCGACTTTCAGG
AGCTGGAGCCGATCTTCTTCGATCACCTTGAGGTGTATCGCGGGGCGAACGCTTTGCGCTTTGGCTCGGGCACGCTGGGC
GGGGCGGTCAATGGCGTCACGCCAACGGGCGAGACCGCGCCGGGGGTTTATGTGCGCGGGGATGTTGGCAGCTTCGAGAC
CTATCGGGGCCTCGTCTCGGGCGGCATGGAGCGCGGCAAGCTCGACGCCTGGGGCGCCGTCAGCGCCGACACCTCGCACG
GGGACCGGGACCATGTGCGCCGGGATTCGGTGCGCTTTCAGGGCAATGTCGGCTATGACGTGACGGATGCCGTGGAGACG
CGGTTTTATCTCAGCCTCAACGATATTGATCAGGAACTGCCCGGCGCGCTGACGCTGAGCGACGCGGTGAACAATCCCAG
GAAGGGCAACTTCTTTGGCGGTCAGGCCCGCGATATCAAATCCGTCCGTGTGCAGAACCAGACGCGCATTGCGTTGGGCG
AGGGTGATCTGGCGATCGGCGTGTGGGTCAATGACAAGGACCTCTATCACCCGATTTTCCAGGTGCTCGATTACAGCTAT
CTCGATAAGGGCGTGTGGGCGCGGTATGACTGGGCGCGTGGGCCGTTTGCGCTGACCGTTGGCGCCGAAGCGCGCGAGGG
CGAGACCGATGCCAGGCGGTTCGTGAACAACAACGGCAAGCGCGGCGCGCTGGTCTTCCAGGCTGATCAGGACGCCTGGA
CGGCGAATGTCTATGCCGAAGGGCGCTATAGTGTCACCGATCAGCTCACCCTGATTGCCGGGGCGATTTATGCCGAAGGC
GGACGCGAGCAGCAGCTCAATCTTAATAACGGCCTGCCCGCCGATGTTCTGGGCTCGGCAGAGTTCGATGAGCTGTCTCC
GAAATTCGGCGCGCTGTTTGAGGTGTCGCCCGATATTCAGCTCTACGCGAACTACAGCCGCTCGGCCGAGTTTCCCGGCT
TCAGCGAGCTGGCGCAGATTGCCGCTTTCGTGCCGGTCGATGCGCAGACAGCCTGGACGGCAGAAATCGGCACGCGCGGA
CGCGCCGGGATCGCCAGCTGGGACGTGTCGCTCTATTCGGCCGATATTGACGGCGAGATGCTGCAGTTCACGGTGAACCC
GGACATTCCCGCCGCCACTTTCAATGCGGACGAGACGGCCCATCGCGGCATCGAGGCGGGGCTGGAGCTGGCGTTTACCG
ACTGGCTGAGCCTGCGTCAGGTTTATCAGTATTCGGACTTCAGGTTTGAAGGCGATGCTGAGTTTGGCGATAATGCGCTG
CCCGTGGTGCCCGAACATGTCTACCGGGCGGAGCTGCGCTTCACGGGCGACCGTTTCACCGTAGCGCCAAACCTCGAATG
GGTGCCTGAAGGGGCGTGGGCGGACTATAACAACACCACGCGCACGGACGGATACACGCTGCTCGGCATAACGGGTAGCT
ACAAGGCGACGGACAAGATCGACATCTTCCTGGATGCGCGCAACCTGGCAGGCGATAAAGCGGCGGGCGACATCTCTGCT
GTCATTACGGCGACGTCTGCCTCGGCGATCTACTATCCGGTGGAGCGCCGGGCGGTGTTCGGCGGCATCCGCGCGCGGTT
CTGA

Upstream 100 bases:

>100_bases
CCCGCCCGCGCCGGCAGATATGTGATTTGAGCGCCGCCCGCTTGCGGGCGGCAATACCGGGCCCGCGCCCGGACACATTC
TGTCTGAAGATCAAACACTC

Downstream 100 bases:

>100_bases
TCTATGCTTCTGCCAGCGCCGGGGAAAACGCCGGCGCTGGTTTTTCTCCCGCTTGCCAGACGGGCGCCTGAAGGCGCAGA
TTGGCACAAAGTGTGGGAGG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 667; Mature: 667

Protein sequence:

>667_residues
MKTRFKRGSAVSLTALSLAFGAMLPAFAEDTLKIEETIIVTSSARAVDAMAQAAATPGGTDVITHEDYADRFLVSMRDTL
AFSPGVYTQPRYGQEVRISIRGSGISRGFHMRGLTLLQDGAPINLADDNGDFQELEPIFFDHLEVYRGANALRFGSGTLG
GAVNGVTPTGETAPGVYVRGDVGSFETYRGLVSGGMERGKLDAWGAVSADTSHGDRDHVRRDSVRFQGNVGYDVTDAVET
RFYLSLNDIDQELPGALTLSDAVNNPRKGNFFGGQARDIKSVRVQNQTRIALGEGDLAIGVWVNDKDLYHPIFQVLDYSY
LDKGVWARYDWARGPFALTVGAEAREGETDARRFVNNNGKRGALVFQADQDAWTANVYAEGRYSVTDQLTLIAGAIYAEG
GREQQLNLNNGLPADVLGSAEFDELSPKFGALFEVSPDIQLYANYSRSAEFPGFSELAQIAAFVPVDAQTAWTAEIGTRG
RAGIASWDVSLYSADIDGEMLQFTVNPDIPAATFNADETAHRGIEAGLELAFTDWLSLRQVYQYSDFRFEGDAEFGDNAL
PVVPEHVYRAELRFTGDRFTVAPNLEWVPEGAWADYNNTTRTDGYTLLGITGSYKATDKIDIFLDARNLAGDKAAGDISA
VITATSASAIYYPVERRAVFGGIRARF

Sequences:

>Translated_667_residues
MKTRFKRGSAVSLTALSLAFGAMLPAFAEDTLKIEETIIVTSSARAVDAMAQAAATPGGTDVITHEDYADRFLVSMRDTL
AFSPGVYTQPRYGQEVRISIRGSGISRGFHMRGLTLLQDGAPINLADDNGDFQELEPIFFDHLEVYRGANALRFGSGTLG
GAVNGVTPTGETAPGVYVRGDVGSFETYRGLVSGGMERGKLDAWGAVSADTSHGDRDHVRRDSVRFQGNVGYDVTDAVET
RFYLSLNDIDQELPGALTLSDAVNNPRKGNFFGGQARDIKSVRVQNQTRIALGEGDLAIGVWVNDKDLYHPIFQVLDYSY
LDKGVWARYDWARGPFALTVGAEAREGETDARRFVNNNGKRGALVFQADQDAWTANVYAEGRYSVTDQLTLIAGAIYAEG
GREQQLNLNNGLPADVLGSAEFDELSPKFGALFEVSPDIQLYANYSRSAEFPGFSELAQIAAFVPVDAQTAWTAEIGTRG
RAGIASWDVSLYSADIDGEMLQFTVNPDIPAATFNADETAHRGIEAGLELAFTDWLSLRQVYQYSDFRFEGDAEFGDNAL
PVVPEHVYRAELRFTGDRFTVAPNLEWVPEGAWADYNNTTRTDGYTLLGITGSYKATDKIDIFLDARNLAGDKAAGDISA
VITATSASAIYYPVERRAVFGGIRARF
>Mature_667_residues
MKTRFKRGSAVSLTALSLAFGAMLPAFAEDTLKIEETIIVTSSARAVDAMAQAAATPGGTDVITHEDYADRFLVSMRDTL
AFSPGVYTQPRYGQEVRISIRGSGISRGFHMRGLTLLQDGAPINLADDNGDFQELEPIFFDHLEVYRGANALRFGSGTLG
GAVNGVTPTGETAPGVYVRGDVGSFETYRGLVSGGMERGKLDAWGAVSADTSHGDRDHVRRDSVRFQGNVGYDVTDAVET
RFYLSLNDIDQELPGALTLSDAVNNPRKGNFFGGQARDIKSVRVQNQTRIALGEGDLAIGVWVNDKDLYHPIFQVLDYSY
LDKGVWARYDWARGPFALTVGAEAREGETDARRFVNNNGKRGALVFQADQDAWTANVYAEGRYSVTDQLTLIAGAIYAEG
GREQQLNLNNGLPADVLGSAEFDELSPKFGALFEVSPDIQLYANYSRSAEFPGFSELAQIAAFVPVDAQTAWTAEIGTRG
RAGIASWDVSLYSADIDGEMLQFTVNPDIPAATFNADETAHRGIEAGLELAFTDWLSLRQVYQYSDFRFEGDAEFGDNAL
PVVPEHVYRAELRFTGDRFTVAPNLEWVPEGAWADYNNTTRTDGYTLLGITGSYKATDKIDIFLDARNLAGDKAAGDISA
VITATSASAIYYPVERRAVFGGIRARF

Specific function: Probable receptor, tonB-dependent [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=701, Percent_Identity=23.5378031383738, Blast_Score=115, Evalue=9e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 72610; Mature: 72610

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTRFKRGSAVSLTALSLAFGAMLPAFAEDTLKIEETIIVTSSARAVDAMAQAAATPGGT
CCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCCC
DVITHEDYADRFLVSMRDTLAFSPGVYTQPRYGQEVRISIRGSGISRGFHMRGLTLLQDG
EEEECCHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEEECCCCCCCEEECCEEEEECC
APINLADDNGDFQELEPIFFDHLEVYRGANALRFGSGTLGGAVNGVTPTGETAPGVYVRG
CCEEEECCCCCHHHHCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEC
DVGSFETYRGLVSGGMERGKLDAWGAVSADTSHGDRDHVRRDSVRFQGNVGYDVTDAVET
CCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCHHHHHCCCEEEECCCCCCCHHCCCE
RFYLSLNDIDQELPGALTLSDAVNNPRKGNFFGGQARDIKSVRVQNQTRIALGEGDLAIG
EEEEEEHHHHHHCCCCEEEHHHCCCCCCCCCCCCCCCCHHHEEECCCEEEEECCCCEEEE
VWVNDKDLYHPIFQVLDYSYLDKGVWARYDWARGPFALTVGAEAREGETDARRFVNNNGK
EEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHCCCCC
RGALVFQADQDAWTANVYAEGRYSVTDQLTLIAGAIYAEGGREQQLNLNNGLPADVLGSA
CEEEEEEECCCCEEEEEEECCEEECCCCEEEEEEEEECCCCCCEEEECCCCCCHHHCCCC
EFDELSPKFGALFEVSPDIQLYANYSRSAEFPGFSELAQIAAFVPVDAQTAWTAEIGTRG
CHHHCCCCCCEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCC
RAGIASWDVSLYSADIDGEMLQFTVNPDIPAATFNADETAHRGIEAGLELAFTDWLSLRQ
CCCEEEEEEEEEEECCCCEEEEEEECCCCCCEEECCCHHHHHHHHHCCEEEHHHHHHHHH
VYQYSDFRFEGDAEFGDNALPVVPEHVYRAELRFTGDRFTVAPNLEWVPEGAWADYNNTT
HHHCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCC
RTDGYTLLGITGSYKATDKIDIFLDARNLAGDKAAGDISAVITATSASAIYYPVERRAVF
CCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCEEEEEHHHHHHH
GGIRARF
CHHCCCC
>Mature Secondary Structure
MKTRFKRGSAVSLTALSLAFGAMLPAFAEDTLKIEETIIVTSSARAVDAMAQAAATPGGT
CCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCCC
DVITHEDYADRFLVSMRDTLAFSPGVYTQPRYGQEVRISIRGSGISRGFHMRGLTLLQDG
EEEECCHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEEEECCCCCCCEEECCEEEEECC
APINLADDNGDFQELEPIFFDHLEVYRGANALRFGSGTLGGAVNGVTPTGETAPGVYVRG
CCEEEECCCCCHHHHCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEC
DVGSFETYRGLVSGGMERGKLDAWGAVSADTSHGDRDHVRRDSVRFQGNVGYDVTDAVET
CCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCHHHHHCCCEEEECCCCCCCHHCCCE
RFYLSLNDIDQELPGALTLSDAVNNPRKGNFFGGQARDIKSVRVQNQTRIALGEGDLAIG
EEEEEEHHHHHHCCCCEEEHHHCCCCCCCCCCCCCCCCHHHEEECCCEEEEECCCCEEEE
VWVNDKDLYHPIFQVLDYSYLDKGVWARYDWARGPFALTVGAEAREGETDARRFVNNNGK
EEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHCCCCC
RGALVFQADQDAWTANVYAEGRYSVTDQLTLIAGAIYAEGGREQQLNLNNGLPADVLGSA
CEEEEEEECCCCEEEEEEECCEEECCCCEEEEEEEEECCCCCCEEEECCCCCCHHHCCCC
EFDELSPKFGALFEVSPDIQLYANYSRSAEFPGFSELAQIAAFVPVDAQTAWTAEIGTRG
CHHHCCCCCCEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCC
RAGIASWDVSLYSADIDGEMLQFTVNPDIPAATFNADETAHRGIEAGLELAFTDWLSLRQ
CCCEEEEEEEEEEECCCCEEEEEEECCCCCCEEECCCHHHHHHHHHCCEEEHHHHHHHHH
VYQYSDFRFEGDAEFGDNALPVVPEHVYRAELRFTGDRFTVAPNLEWVPEGAWADYNNTT
HHHCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCC
RTDGYTLLGITGSYKATDKIDIFLDARNLAGDKAAGDISAVITATSASAIYYPVERRAVF
CCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCEEEEEHHHHHHH
GGIRARF
CHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]