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The map label for this gene is cydA [H]

Identifier: 114799451

GI number: 114799451

Start: 1699444

End: 1701024

Strand: Reverse

Name: cydA [H]

Synonym: HNE_1659

Alternate gene names: 114799451

Gene position: 1701024-1699444 (Counterclockwise)

Preceding gene: 114797695

Following gene: 114798433

Centisome position: 45.91

GC content: 60.47

Gene sequence:

>1581_bases
ATGCCCGACCTCCTCGTAGCAGACCTGTCACGCTGGCAGTTTGCCCTCACCGCCATGTACCACTTCCTGTTCGTGCCGCT
CACGCTCGGCCTCTCGATGATCCTGGTGATCATGGAGGGCGCCTATGTGATGACCGGCAAGGAAGTCTGGAAACGGACAA
CCAAGTTCTGGGCAAACCTCTTCGGCATCAACTTCGTGCTGGGTGTCGCCACCGGCATCACGATGGAATTCCAGTTCGGC
ACCAACTGGTCCTACTACTCACACTATGTCGGCGACGTGTTCGGCGCCCCGCTGGCCATCGAGGGCCTGATGGCCTTCTT
CCTGGAAGCCACGCTCGTCGGCCTCATGTTCTTTGGCTGGGACAAGCTCTCCCGGCCCATCCACTGGCTGGTTACCTTCC
TGGTCGCGATGGCGTCAAACTTCTCCGCCCTGTGGATTCTGATCGCCAATGGCTGGATGCAGAACCCCGTCGGCGCCGAT
TTCAATCCCGAAACCATGCGGATGGAAATCACCAACTTTATGGAAGTGATCTTCAACCCCGTCGCCCAGGCGAAATTTGT
CCACACCGTCAGCGCCGGCTACGTCACCGCGTCGGTCTTCGTGCTCGGCATCTCGGCCTGGTATGTACTGCAAGGCCGCC
ATCTCGGCCTCGCCAAACGCTCGATGACGGTCGCTGCCAGCTTCGGTCTCCTCTCCGCCTTTTCCGTCGTCGTCCTGGGC
GATGAAAGCGGCTACGCGCTCACCGATAACCAGAAGATGAAGCTCGCCGCCCTCGAAGGCATGTGGCACACGGAAGAAGC
CCCCGCCGCGCTGACATTGATCAGCCTTCCCGATCAGGGCGCCCAGAAAAACCACTTTGAAATTCAGATCCCCTGGGTCC
TCGGCCTCATCGCTACCCGCTCGCTGGACGGTGAAGTCGAAGGCATTCTGCCGCTCGTCGCCATCGCCGAAGACCGCATC
GAAAATGGCCTCATCGCCTATGATGCCTTGCAATTTATCACCGATGATCCCGCCAATCTGGCCGCCCGCGAAACCTTTGA
AACCACCAAACAGGATCTCGGCTACGCCCTCCTCCTGAAGCGGTATGTCGAAGACCCGCGCACCGCTGACGCCGACACCA
TCACCAAAGCCGCCTTCGATACGGTCCCGAACGTCCTGATGGCGTTCTTCTCCTTCCGCATCATGGCCGGCATCGGCATT
CTCTGCATCGTCATTTTCAGCCTCGCTTTCTTCTTCATCAGCATGAAGCGGAAAGTCCCCCGATGGTTCCTTCGGGTCGC
GCTGTTCACGATCCCGCTGCCCTGGATCGCCGCCGAACTTGGCTGGGTACTGGCCGAAGTCGGCCGCCAGCCCTGGGTGA
TCGACGGTGTCCTGCCAACCTTCCTGGGCGTCTCGAGCCTGTCGGCAACGCAGGTCATCATGACGATGGTGGGCTTCACA
CTGATCTATGGCACACTCGCCGTGATCGAGATCAGCCTCATGCTCCGCGCCATCAAGGCCGGGCCTGGTGGACGCATCCT
CCCGGAGGGTGTGACCAGCGAAGGCCCCACCGGTGGCCGTCCGGTTCAATTCGACGTCTGA

Upstream 100 bases:

>100_bases
GACGCATGCGACTTATCGCGGCGAGACTTCCCCCGCGAATTACATTAGAGATTCGTGAAATAAGGCAGCACCACGCTGCA
AACTCAACGGAGCTGGGACG

Downstream 100 bases:

>100_bases
GGGAGAACACACATGGACATCCCACTCGACTATGCCACGCTGAAGGTCATCTGGTGGGCGCTCGTCGGCGTCCTCTTCAT
CGGCTACGCGGTGACGGATG

Product: cytochrome d ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 526; Mature: 525

Protein sequence:

>526_residues
MPDLLVADLSRWQFALTAMYHFLFVPLTLGLSMILVIMEGAYVMTGKEVWKRTTKFWANLFGINFVLGVATGITMEFQFG
TNWSYYSHYVGDVFGAPLAIEGLMAFFLEATLVGLMFFGWDKLSRPIHWLVTFLVAMASNFSALWILIANGWMQNPVGAD
FNPETMRMEITNFMEVIFNPVAQAKFVHTVSAGYVTASVFVLGISAWYVLQGRHLGLAKRSMTVAASFGLLSAFSVVVLG
DESGYALTDNQKMKLAALEGMWHTEEAPAALTLISLPDQGAQKNHFEIQIPWVLGLIATRSLDGEVEGILPLVAIAEDRI
ENGLIAYDALQFITDDPANLAARETFETTKQDLGYALLLKRYVEDPRTADADTITKAAFDTVPNVLMAFFSFRIMAGIGI
LCIVIFSLAFFFISMKRKVPRWFLRVALFTIPLPWIAAELGWVLAEVGRQPWVIDGVLPTFLGVSSLSATQVIMTMVGFT
LIYGTLAVIEISLMLRAIKAGPGGRILPEGVTSEGPTGGRPVQFDV

Sequences:

>Translated_526_residues
MPDLLVADLSRWQFALTAMYHFLFVPLTLGLSMILVIMEGAYVMTGKEVWKRTTKFWANLFGINFVLGVATGITMEFQFG
TNWSYYSHYVGDVFGAPLAIEGLMAFFLEATLVGLMFFGWDKLSRPIHWLVTFLVAMASNFSALWILIANGWMQNPVGAD
FNPETMRMEITNFMEVIFNPVAQAKFVHTVSAGYVTASVFVLGISAWYVLQGRHLGLAKRSMTVAASFGLLSAFSVVVLG
DESGYALTDNQKMKLAALEGMWHTEEAPAALTLISLPDQGAQKNHFEIQIPWVLGLIATRSLDGEVEGILPLVAIAEDRI
ENGLIAYDALQFITDDPANLAARETFETTKQDLGYALLLKRYVEDPRTADADTITKAAFDTVPNVLMAFFSFRIMAGIGI
LCIVIFSLAFFFISMKRKVPRWFLRVALFTIPLPWIAAELGWVLAEVGRQPWVIDGVLPTFLGVSSLSATQVIMTMVGFT
LIYGTLAVIEISLMLRAIKAGPGGRILPEGVTSEGPTGGRPVQFDV
>Mature_525_residues
PDLLVADLSRWQFALTAMYHFLFVPLTLGLSMILVIMEGAYVMTGKEVWKRTTKFWANLFGINFVLGVATGITMEFQFGT
NWSYYSHYVGDVFGAPLAIEGLMAFFLEATLVGLMFFGWDKLSRPIHWLVTFLVAMASNFSALWILIANGWMQNPVGADF
NPETMRMEITNFMEVIFNPVAQAKFVHTVSAGYVTASVFVLGISAWYVLQGRHLGLAKRSMTVAASFGLLSAFSVVVLGD
ESGYALTDNQKMKLAALEGMWHTEEAPAALTLISLPDQGAQKNHFEIQIPWVLGLIATRSLDGEVEGILPLVAIAEDRIE
NGLIAYDALQFITDDPANLAARETFETTKQDLGYALLLKRYVEDPRTADADTITKAAFDTVPNVLMAFFSFRIMAGIGIL
CIVIFSLAFFFISMKRKVPRWFLRVALFTIPLPWIAAELGWVLAEVGRQPWVIDGVLPTFLGVSSLSATQVIMTMVGFTL
IYGTLAVIEISLMLRAIKAGPGGRILPEGVTSEGPTGGRPVQFDV

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=500, Percent_Identity=57.2, Blast_Score=585, Evalue=1e-168,
Organism=Escherichia coli, GI1787212, Length=514, Percent_Identity=49.2217898832685, Blast_Score=494, Evalue=1e-141,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 57986; Mature: 57854

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDLLVADLSRWQFALTAMYHFLFVPLTLGLSMILVIMEGAYVMTGKEVWKRTTKFWANL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHH
FGINFVLGVATGITMEFQFGTNWSYYSHYVGDVFGAPLAIEGLMAFFLEATLVGLMFFGW
HHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCH
DKLSRPIHWLVTFLVAMASNFSALWILIANGWMQNPVGADFNPETMRMEITNFMEVIFNP
HHHCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VAQAKFVHTVSAGYVTASVFVLGISAWYVLQGRHLGLAKRSMTVAASFGLLSAFSVVVLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHCEEEEEE
DESGYALTDNQKMKLAALEGMWHTEEAPAALTLISLPDQGAQKNHFEIQIPWVLGLIATR
CCCCCEECCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHHHHHHHC
SLDGEVEGILPLVAIAEDRIENGLIAYDALQFITDDPANLAARETFETTKQDLGYALLLK
CCCCCHHHHHHHHHHHHHHHHCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
RYVEDPRTADADTITKAAFDTVPNVLMAFFSFRIMAGIGILCIVIFSLAFFFISMKRKVP
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RWFLRVALFTIPLPWIAAELGWVLAEVGRQPWVIDGVLPTFLGVSSLSATQVIMTMVGFT
HHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCHHHHHHHHHHHHH
LIYGTLAVIEISLMLRAIKAGPGGRILPEGVTSEGPTGGRPVQFDV
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECC
>Mature Secondary Structure 
PDLLVADLSRWQFALTAMYHFLFVPLTLGLSMILVIMEGAYVMTGKEVWKRTTKFWANL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHH
FGINFVLGVATGITMEFQFGTNWSYYSHYVGDVFGAPLAIEGLMAFFLEATLVGLMFFGW
HHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCH
DKLSRPIHWLVTFLVAMASNFSALWILIANGWMQNPVGADFNPETMRMEITNFMEVIFNP
HHHCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VAQAKFVHTVSAGYVTASVFVLGISAWYVLQGRHLGLAKRSMTVAASFGLLSAFSVVVLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHCEEEEEE
DESGYALTDNQKMKLAALEGMWHTEEAPAALTLISLPDQGAQKNHFEIQIPWVLGLIATR
CCCCCEECCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHHHHHHHC
SLDGEVEGILPLVAIAEDRIENGLIAYDALQFITDDPANLAARETFETTKQDLGYALLLK
CCCCCHHHHHHHHHHHHHHHHCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
RYVEDPRTADADTITKAAFDTVPNVLMAFFSFRIMAGIGILCIVIFSLAFFFISMKRKVP
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RWFLRVALFTIPLPWIAAELGWVLAEVGRQPWVIDGVLPTFLGVSSLSATQVIMTMVGFT
HHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCHHHHHHHHHHHHH
LIYGTLAVIEISLMLRAIKAGPGGRILPEGVTSEGPTGGRPVQFDV
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]