| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is fyuA [H]
Identifier: 114799262
GI number: 114799262
Start: 2269081
End: 2271357
Strand: Reverse
Name: fyuA [H]
Synonym: HNE_2180
Alternate gene names: 114799262
Gene position: 2271357-2269081 (Counterclockwise)
Preceding gene: 114797722
Following gene: 114800451
Centisome position: 61.3
GC content: 56.13
Gene sequence:
>2277_bases ATGAAATTTTTGCACGCTAGAAGTGTTTCTTGTCTCGCGCTTATCAGCGCGATTGGCGTAACGGGCATTGCGCCTGCGGC CTTTGCGCAGGCGGACTCCGAGAAGAAAATGGAGACTGTGACGGTCACAGCCACCCGGCGCGAACAGACACTTCAGGAAG TTCCCGTCGCTGTTTCGGTCGTTTCTGGCGACCTACTGGAATCGACCGGCACGGGGTCGATGGATGCTCTTTCGGACCTC ACGCCAAGCCTGACACTTCTTAAAGGCAACAACGAATCAAACAGCTCCGTCAGCATCCGGGGCCTGGGCACGTCGGTCTT TTCTCAAGCTGTCGAACCCTCAGTCTCAATCGTGATTGATGATGTCTTGATGGCACGGTCGGGCCAAGGGTTTCAGGACC TGATAGATGTACAGCGCGTTGAGGTGCTGCGTGGGCCGCAAAGTACATTGTTTGGCAAGAATGCCTCGGCAGGTGTCGTG TCGGTCACGACCAGAGGCCCCTCCGAAACGCTGACCGGTGGCTTCGATGTGGAACTTGCAGAGGAAGACAGCTCCTATGC TGTGCGCGGGACTCTGTCGGGACCCATTTCCGATACGGTCGGCTTTCGCGTCAGCGCTTTTACCAACGACTATGCCGGGC ATCTCCGGAACGTTGCCACGGGTGAGCGCGCCAACGGCAGCGATAGCTGGGGTCTGCGGGGCAAATTGCAGTTCGACATT ACCGATCGTCTGGCGCTGACGCTCATCGGCGACTACCGGGAATCTGACTCCGAACCTGTGGTCACGGTGCGCACGGCCAA CAATCCAGCCTACTTGGCGCAATTGGCTCCCGTGGTGCCGGGGCAGGAAAATACCGCCTTGCGCGCGAATGCCGACAGCT ATGCAACGACCGAGCAGGCGGGCCTTTCAGCCAAGGCGGAATATACTTTCGACAACGACTTCACGCTGACCTCGATTTCG GCTTGGCGGTCTTGGGATTTTGCCAACAACCTGGACGTTGATGGCCTGTCCAATGAAAACCCGCTCCCAGGTGGCCTCCT GACTTTCGACCTCAACAGCGGCACGATCAATCTGAACCAATACACTCAGGAAGTTCGCCTCGCATCGCCCGATCTTGGAA ATTTCGATTTCCTTATCGGGGCCTTTGCCTACCATCTCGATCTGGAGCGCCACTTTGAGCGGCGTTTGGAACTTATGACG CCTGGCGGCATGATCGCCCAGTCCGGGCAGTTCGATGGAAGCGTCGAGAACAACTACTATGCGGCGTTTGCCAGCGCGAA CTACTATTTCAATGATCAGACCTCCCTGTTTGGGGGCGCGCGTCTTCTGACAGAAGAGGTCAACTGGGTGGCATTCCGTG ATCCGACGAATGTGCTTGTTCCTGGCGATCTGCCGCTCACAGGTGTGCAAGGAATTCTCGCTGATTTCACGGGGGGCGTT AGCGACACAGCAGTCGTCGGAAACATCGGTATACGGCATTCTTTCAATGACTATGCCAATGCCTATGCGAGCTATTCTCG CGGTTACAAGGGTAAGTCGACGACGATTGATTTTGCGTCAATTCAAGGCGAAGAGCCAGTTGATGCAGAAGAATCCGACG CCTATGAAATTGGCCTGAAGCTTACCTCTCCGGGTGGGAGATGGGCCGCAAACTTTGCTGCTTTCCATACCCAGTTCAAC AATTTCCAATCTCAGGCTCAGCTGCCGGGTGAGATCGCCACTGTACTGATCAACGCTGGTGACGTCTCGACCCAGGGCGT GGAGGCCGAGTTGATGGCACGGCCGACCGATCTCACCGATATCAGCCTGGGTCTGGCTTACATTGATGCCACGATTGATA CATTCCCCTCCGGACCGTGCTATGCGGGCCAGACGGTGGCTGATGGTTGCGTCAATGGTGTCCAAGACCTTGCAGGTAAG GATCTGCCCTATTCGCCCGATTTGCGCCTGACTTTCTTTGGTCGCCAGACGGTACCTCTGGCGGCGATGCCGTTTGACGG ATTTATTCAGGCCAGCGGTTACTGGCAGGATGATATTCTGTTTTCGTTGGATCAGTCCCCGATTGCCACGGGTGAAGCAC GGACCATGGTCAATGCGGCGATCGGCGTTGAAGACAAGAATGGGCGCTACAATGCCTCAATCTTTGTCAACAACGTGTTC GACGAGCACTATGTGACATCGATCTCGCAACTCGGATTGTTCGGCGGCTTCACCTTCCAGTATGTGCCGCGCGATCATCA GCGTTACGTCGGTATCCGGTTCGGTGCCAACTTCTAG
Upstream 100 bases:
>100_bases TTCTAAAAAACGAAAAATTGCTTGACTTCCTCCGTGTCCCGAAAGAGGAACGTCTTCAGCAGGTGTTGCAGGAAACAGGC TTCACCATGGGAGGAAAATC
Downstream 100 bases:
>100_bases GGCCGATCTGGTGCGTTTCCTCCCAGCGTCCGGCGAGACTGGGTGCCGCCTCTAAGGCGGCACCCTTTTTTTGCATTCGA TGGCTGTGAGTGGAGGGGTG
Product: outer membrane receptor (OMR) family protein
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 758; Mature: 758
Protein sequence:
>758_residues MKFLHARSVSCLALISAIGVTGIAPAAFAQADSEKKMETVTVTATRREQTLQEVPVAVSVVSGDLLESTGTGSMDALSDL TPSLTLLKGNNESNSSVSIRGLGTSVFSQAVEPSVSIVIDDVLMARSGQGFQDLIDVQRVEVLRGPQSTLFGKNASAGVV SVTTRGPSETLTGGFDVELAEEDSSYAVRGTLSGPISDTVGFRVSAFTNDYAGHLRNVATGERANGSDSWGLRGKLQFDI TDRLALTLIGDYRESDSEPVVTVRTANNPAYLAQLAPVVPGQENTALRANADSYATTEQAGLSAKAEYTFDNDFTLTSIS AWRSWDFANNLDVDGLSNENPLPGGLLTFDLNSGTINLNQYTQEVRLASPDLGNFDFLIGAFAYHLDLERHFERRLELMT PGGMIAQSGQFDGSVENNYYAAFASANYYFNDQTSLFGGARLLTEEVNWVAFRDPTNVLVPGDLPLTGVQGILADFTGGV SDTAVVGNIGIRHSFNDYANAYASYSRGYKGKSTTIDFASIQGEEPVDAEESDAYEIGLKLTSPGGRWAANFAAFHTQFN NFQSQAQLPGEIATVLINAGDVSTQGVEAELMARPTDLTDISLGLAYIDATIDTFPSGPCYAGQTVADGCVNGVQDLAGK DLPYSPDLRLTFFGRQTVPLAAMPFDGFIQASGYWQDDILFSLDQSPIATGEARTMVNAAIGVEDKNGRYNASIFVNNVF DEHYVTSISQLGLFGGFTFQYVPRDHQRYVGIRFGANF
Sequences:
>Translated_758_residues MKFLHARSVSCLALISAIGVTGIAPAAFAQADSEKKMETVTVTATRREQTLQEVPVAVSVVSGDLLESTGTGSMDALSDL TPSLTLLKGNNESNSSVSIRGLGTSVFSQAVEPSVSIVIDDVLMARSGQGFQDLIDVQRVEVLRGPQSTLFGKNASAGVV SVTTRGPSETLTGGFDVELAEEDSSYAVRGTLSGPISDTVGFRVSAFTNDYAGHLRNVATGERANGSDSWGLRGKLQFDI TDRLALTLIGDYRESDSEPVVTVRTANNPAYLAQLAPVVPGQENTALRANADSYATTEQAGLSAKAEYTFDNDFTLTSIS AWRSWDFANNLDVDGLSNENPLPGGLLTFDLNSGTINLNQYTQEVRLASPDLGNFDFLIGAFAYHLDLERHFERRLELMT PGGMIAQSGQFDGSVENNYYAAFASANYYFNDQTSLFGGARLLTEEVNWVAFRDPTNVLVPGDLPLTGVQGILADFTGGV SDTAVVGNIGIRHSFNDYANAYASYSRGYKGKSTTIDFASIQGEEPVDAEESDAYEIGLKLTSPGGRWAANFAAFHTQFN NFQSQAQLPGEIATVLINAGDVSTQGVEAELMARPTDLTDISLGLAYIDATIDTFPSGPCYAGQTVADGCVNGVQDLAGK DLPYSPDLRLTFFGRQTVPLAAMPFDGFIQASGYWQDDILFSLDQSPIATGEARTMVNAAIGVEDKNGRYNASIFVNNVF DEHYVTSISQLGLFGGFTFQYVPRDHQRYVGIRFGANF >Mature_758_residues MKFLHARSVSCLALISAIGVTGIAPAAFAQADSEKKMETVTVTATRREQTLQEVPVAVSVVSGDLLESTGTGSMDALSDL TPSLTLLKGNNESNSSVSIRGLGTSVFSQAVEPSVSIVIDDVLMARSGQGFQDLIDVQRVEVLRGPQSTLFGKNASAGVV SVTTRGPSETLTGGFDVELAEEDSSYAVRGTLSGPISDTVGFRVSAFTNDYAGHLRNVATGERANGSDSWGLRGKLQFDI TDRLALTLIGDYRESDSEPVVTVRTANNPAYLAQLAPVVPGQENTALRANADSYATTEQAGLSAKAEYTFDNDFTLTSIS AWRSWDFANNLDVDGLSNENPLPGGLLTFDLNSGTINLNQYTQEVRLASPDLGNFDFLIGAFAYHLDLERHFERRLELMT PGGMIAQSGQFDGSVENNYYAAFASANYYFNDQTSLFGGARLLTEEVNWVAFRDPTNVLVPGDLPLTGVQGILADFTGGV SDTAVVGNIGIRHSFNDYANAYASYSRGYKGKSTTIDFASIQGEEPVDAEESDAYEIGLKLTSPGGRWAANFAAFHTQFN NFQSQAQLPGEIATVLINAGDVSTQGVEAELMARPTDLTDISLGLAYIDATIDTFPSGPCYAGQTVADGCVNGVQDLAGK DLPYSPDLRLTFFGRQTVPLAAMPFDGFIQASGYWQDDILFSLDQSPIATGEARTMVNAAIGVEDKNGRYNASIFVNNVF DEHYVTSISQLGLFGGFTFQYVPRDHQRYVGIRFGANF
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 81297; Mature: 81297
Theoretical pI: Translated: 4.18; Mature: 4.18
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFLHARSVSCLALISAIGVTGIAPAAFAQADSEKKMETVTVTATRREQTLQEVPVAVSV CCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEEEEECHHHHHHHHCCEEEEE VSGDLLESTGTGSMDALSDLTPSLTLLKGNNESNSSVSIRGLGTSVFSQAVEPSVSIVID ECCHHHHCCCCCCHHHHHHCCCCEEEEECCCCCCCEEEEEECCHHHHHHHCCCCEEEEEE DVLMARSGQGFQDLIDVQRVEVLRGPQSTLFGKNASAGVVSVTTRGPSETLTGGFDVELA HHHHHCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEEC EEDSSYAVRGTLSGPISDTVGFRVSAFTNDYAGHLRNVATGERANGSDSWGLRGKLQFDI CCCCCEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEE TDRLALTLIGDYRESDSEPVVTVRTANNPAYLAQLAPVVPGQENTALRANADSYATTEQA CCCEEEEEEECCCCCCCCCEEEEEECCCCEEEHEECCCCCCCCCCEEEECCCCCCCHHHC GLSAKAEYTFDNDFTLTSISAWRSWDFANNLDVDGLSNENPLPGGLLTFDLNSGTINLNQ CCCEEEEEEECCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEHHH YTQEVRLASPDLGNFDFLIGAFAYHLDLERHFERRLELMTPGGMIAQSGQFDGSVENNYY HHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCCCCCCCCCEE AAFASANYYFNDQTSLFGGARLLTEEVNWVAFRDPTNVLVPGDLPLTGVQGILADFTGGV EEEEECEEEECCCCCCCCCHHEEEECCCEEEEECCCCEEECCCCCCHHHHHHHHHHCCCC SDTAVVGNIGIRHSFNDYANAYASYSRGYKGKSTTIDFASIQGEEPVDAEESDAYEIGLK CCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEE LTSPGGRWAANFAAFHTQFNNFQSQAQLPGEIATVLINAGDVSTQGVEAELMARPTDLTD EECCCCCEEHHHHHHHHHHHCCHHHHCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCC ISLGLAYIDATIDTFPSGPCYAGQTVADGCVNGVQDLAGKDLPYSPDLRLTFFGRQTVPL CEEEEEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCE AAMPFDGFIQASGYWQDDILFSLDQSPIATGEARTMVNAAIGVEDKNGRYNASIFVNNVF EECCCCCEEEECCCCCCCEEEEECCCCCCCCCHHEEEEEEEEEECCCCEEEEEEEEECCC DEHYVTSISQLGLFGGFTFQYVPRDHQRYVGIRFGANF CHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCCC >Mature Secondary Structure MKFLHARSVSCLALISAIGVTGIAPAAFAQADSEKKMETVTVTATRREQTLQEVPVAVSV CCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEEEEECHHHHHHHHCCEEEEE VSGDLLESTGTGSMDALSDLTPSLTLLKGNNESNSSVSIRGLGTSVFSQAVEPSVSIVID ECCHHHHCCCCCCHHHHHHCCCCEEEEECCCCCCCEEEEEECCHHHHHHHCCCCEEEEEE DVLMARSGQGFQDLIDVQRVEVLRGPQSTLFGKNASAGVVSVTTRGPSETLTGGFDVELA HHHHHCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEEC EEDSSYAVRGTLSGPISDTVGFRVSAFTNDYAGHLRNVATGERANGSDSWGLRGKLQFDI CCCCCEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEE TDRLALTLIGDYRESDSEPVVTVRTANNPAYLAQLAPVVPGQENTALRANADSYATTEQA CCCEEEEEEECCCCCCCCCEEEEEECCCCEEEHEECCCCCCCCCCEEEECCCCCCCHHHC GLSAKAEYTFDNDFTLTSISAWRSWDFANNLDVDGLSNENPLPGGLLTFDLNSGTINLNQ CCCEEEEEEECCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEHHH YTQEVRLASPDLGNFDFLIGAFAYHLDLERHFERRLELMTPGGMIAQSGQFDGSVENNYY HHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECCCCCCCCCCCEE AAFASANYYFNDQTSLFGGARLLTEEVNWVAFRDPTNVLVPGDLPLTGVQGILADFTGGV EEEEECEEEECCCCCCCCCHHEEEECCCEEEEECCCCEEECCCCCCHHHHHHHHHHCCCC SDTAVVGNIGIRHSFNDYANAYASYSRGYKGKSTTIDFASIQGEEPVDAEESDAYEIGLK CCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEE LTSPGGRWAANFAAFHTQFNNFQSQAQLPGEIATVLINAGDVSTQGVEAELMARPTDLTD EECCCCCEEHHHHHHHHHHHCCHHHHCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCC ISLGLAYIDATIDTFPSGPCYAGQTVADGCVNGVQDLAGKDLPYSPDLRLTFFGRQTVPL CEEEEEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCE AAMPFDGFIQASGYWQDDILFSLDQSPIATGEARTMVNAAIGVEDKNGRYNASIFVNNVF EECCCCCEEEECCCCCCCEEEEECCCCCCCCCHHEEEEEEEEEECCCCEEEEEEEEECCC DEHYVTSISQLGLFGGFTFQYVPRDHQRYVGIRFGANF CHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA