| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is 114799180
Identifier: 114799180
GI number: 114799180
Start: 424065
End: 426581
Strand: Reverse
Name: 114799180
Synonym: HNE_0427
Alternate gene names: NA
Gene position: 426581-424065 (Counterclockwise)
Preceding gene: 114797728
Following gene: 114800336
Centisome position: 11.51
GC content: 65.63
Gene sequence:
>2517_bases ATGAAACCTGCTGCACTTCTCGCCGCCTTGTGCCTGCTGCTCACCGGCCCCGCCCTGGCGCAGGATAAGGCCGAAGCGCC GCCCTCGCTTGAGGCGCGCATCGAAACACTGGAAGCCCGGCCCGGATTTCTGAACCTCTATGTCGATCCTGCCAGCGGCA AGGTGCTCGCCGCCCTGCCCCCGCCAGACGCAGATGGCGTCTCGGTCCGCTTTATCTATTCCACCGGGCTGACGGCCGGG CTCGGCTCCAACCCTATTGGCCTGGACCGGGGCAACGCTTCTTCGGGCGACATCCTTCGCTTCCGCAAGATCGGGGACAA GGTCGTCGCCGAGGCGGAGAACTGGAAATACCGCGCCACATCGGGGCGGCGCGATGAGGAACGCTCCGTACAGCAGAGCT TTGCCAACGCCTTCCTCTGGTCCACAGGCATCGAGGCGACCGGCGCAGACGGCGCGCTGCTGATCGACCTGTCAGGCTTC CTGACGCGGGACGCAGCCGACATTGCCAGCGCGCTGAAGCATGGCAAGGACGCGGGCGAGTATCGCCTGGCCGCAGACCG CTCGATGCCCGACCCTGCCAGCGCCCTCTCCTTCCCCGACAATGCCGAGATTGACGCCTTCCTGACCTTCGAGACGTCCA AGCCGAATGCCCAGACCTATGCCACCGCCGCCGATGCGCGCGCGGTGACGCTGGTGCTGCACCATTCCTTCGTGCGCCTG CCCGATGACGCCTACACGCCGCGCCTGTTTGACCAGCGCACGGCCAGCATCGGCATGGGCTTCCATGACTTCTCCGCGCC GCTGGGCGCACCGCTCGTCTCGCGCTTCTCGCCGCGCATGCGGCTGGAGCGGGTGAACCCCGCCGCCGCCTCCGGCCCGG TAAAGGAACCGATCGTCTTCTATGTGGACAATGGCGCGCCGGAGGAAATCCGCGACGCGCTGATCGAAGGGGCCGCCTGG TGGGCGCAGGGCTTTGAAGCGGCGGGCTTTGAGGAGGCTTACCGGGTGGAGGTTCTCCCCGAAGGCGCCCACCCGCTCGA CGTGCGCTACAACGTCATCAACTGGGTGCATCGCCAGACGCGCGGCTGGTCCTATGGCGGCAGCGTGATGGACCCGCGCA CGGGCGAGATCCTGAAGGCCAATGTCATCCTCGGATCGCAGCGGGTGCGCCAGGACCGGATGATCTTTGAGGGGCTTGCG GGCGCCGCGAAGACCGGCACAGGCGCAGCCGATGATCCGGTGGAGGTGTCGCTGGCGCGCATTCGTCAGCTGTCCGCCCA TGAGGTGGGCCACACCCTTGGGTTTGCACACAATTTTGCCGCCAGCACGAATGACCGGGCCTCGGTGATGGATTACCCGG CGCCCTATGTGCGCCCGGCCTCTGGCGGCGGGCTCGACTTTAGAAATGCTTATGCCACCGGCCTGGGCGCCTGGGACGTG TTTACGGTGAAATGGCTTTACGGCCAGTTCCCCGAAGGCGGGGATAACCTGCCCGCGCTCAACGCGCTGGTGGATGAAGC CTATGGGGCGGGCCTGCGCTTTGTTTCGGACGATCATGCCCGCAGCAAGGACACAGGACACCCCTTCGGCGCGGTCTGGG ACAATGGCGCAGACCCGATTGCGACGCTTGATGAGGTGATGGAAGTCCGCCGGATAGCGCTGGCGAATTTTGGCCCCGGC GCGCTGGCGCAGGGGCGGCCAATGTCTGAGCTGAACGCTGTGATCGTGCCGATCTATCTTTACCATCGCTATCAGGTGGA GGCGGCCGCCAAGAGCCTCGGGGGACTGAACTTCCGGTATCAGGTGAGGGGAGAAGGCGAGGCGCCGGCCGTTCCGGTGG CTCCGACTGAGCAGCGCCGGGCGCTGCAAGCCCTTGTAAAGACACTGAAACCTGCTGCGCTTGACCTTTCCGACGCGGCG CTGAACTACCTGACGCCGGGCGATGTCGGCTATGCGGGCGGCGGCACGATCGAAGAGCTGTTTCCCAACCGGACGGGGCC GGTGTTCGATCTGGCCGCTTCTGCAGAGATTGCTGCAGGTTTGACGCTTTCGGCGGTGCTCGATCCGGCGCGCGCGAACC GGCTGGTGGCGTATGCGCAGCGCAGCCCGGAGGCCCTGACACTGAAGGATGTGATCGGTACACTGGAAGCGGCTGTTTTT GTTGAAGAAAAAAGCCCGCGGCTGGCCGCGCTCGGCCAGATTGTCCAGACGCAGTTTGTGGCTGAGCTGATTTCCCTGTC CCGCAACGAGACCGCGTCAGCCTCCGTCAAAGCCGTGACAGATGGCTACCTTTCCGGGCTACAAACGCGCCTTGCGAAGA CAAAATCAGGACAAATCGGGACATATCAGGACACTTCGCGCGCCCTGGCGGACATGATCGGCAAACATCTGGCGGGCGAC GACCTGCCCGCCTCTATCCTGCGCCCCGCGCCCCCTGCCCCCGCCGGCGCGCCCATCGGAAGCATGACCGGCGCGATGGG GCAGATGGAAGACTGCTGGCACTGCCCGGCGGAGTAG
Upstream 100 bases:
>100_bases ACACCCCCGCCATGGCAAAACTTTGCGTCTGCTTCGTTGCTCTCGGCGGCTGGATGGCTTTAATCGCGCCAGATGCTGAT GCGATCCGGGGGCCTTTGCC
Downstream 100 bases:
>100_bases GCGCAGGCTTATCCCGTGGATAAGGCCGCTCAGCCAGGCGCAATGCCCAGCGCGCGGACGGATTGCCAGACATCGTCGAC TGACAGCTCTTTGAGGGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 838; Mature: 838
Protein sequence:
>838_residues MKPAALLAALCLLLTGPALAQDKAEAPPSLEARIETLEARPGFLNLYVDPASGKVLAALPPPDADGVSVRFIYSTGLTAG LGSNPIGLDRGNASSGDILRFRKIGDKVVAEAENWKYRATSGRRDEERSVQQSFANAFLWSTGIEATGADGALLIDLSGF LTRDAADIASALKHGKDAGEYRLAADRSMPDPASALSFPDNAEIDAFLTFETSKPNAQTYATAADARAVTLVLHHSFVRL PDDAYTPRLFDQRTASIGMGFHDFSAPLGAPLVSRFSPRMRLERVNPAAASGPVKEPIVFYVDNGAPEEIRDALIEGAAW WAQGFEAAGFEEAYRVEVLPEGAHPLDVRYNVINWVHRQTRGWSYGGSVMDPRTGEILKANVILGSQRVRQDRMIFEGLA GAAKTGTGAADDPVEVSLARIRQLSAHEVGHTLGFAHNFAASTNDRASVMDYPAPYVRPASGGGLDFRNAYATGLGAWDV FTVKWLYGQFPEGGDNLPALNALVDEAYGAGLRFVSDDHARSKDTGHPFGAVWDNGADPIATLDEVMEVRRIALANFGPG ALAQGRPMSELNAVIVPIYLYHRYQVEAAAKSLGGLNFRYQVRGEGEAPAVPVAPTEQRRALQALVKTLKPAALDLSDAA LNYLTPGDVGYAGGGTIEELFPNRTGPVFDLAASAEIAAGLTLSAVLDPARANRLVAYAQRSPEALTLKDVIGTLEAAVF VEEKSPRLAALGQIVQTQFVAELISLSRNETASASVKAVTDGYLSGLQTRLAKTKSGQIGTYQDTSRALADMIGKHLAGD DLPASILRPAPPAPAGAPIGSMTGAMGQMEDCWHCPAE
Sequences:
>Translated_838_residues MKPAALLAALCLLLTGPALAQDKAEAPPSLEARIETLEARPGFLNLYVDPASGKVLAALPPPDADGVSVRFIYSTGLTAG LGSNPIGLDRGNASSGDILRFRKIGDKVVAEAENWKYRATSGRRDEERSVQQSFANAFLWSTGIEATGADGALLIDLSGF LTRDAADIASALKHGKDAGEYRLAADRSMPDPASALSFPDNAEIDAFLTFETSKPNAQTYATAADARAVTLVLHHSFVRL PDDAYTPRLFDQRTASIGMGFHDFSAPLGAPLVSRFSPRMRLERVNPAAASGPVKEPIVFYVDNGAPEEIRDALIEGAAW WAQGFEAAGFEEAYRVEVLPEGAHPLDVRYNVINWVHRQTRGWSYGGSVMDPRTGEILKANVILGSQRVRQDRMIFEGLA GAAKTGTGAADDPVEVSLARIRQLSAHEVGHTLGFAHNFAASTNDRASVMDYPAPYVRPASGGGLDFRNAYATGLGAWDV FTVKWLYGQFPEGGDNLPALNALVDEAYGAGLRFVSDDHARSKDTGHPFGAVWDNGADPIATLDEVMEVRRIALANFGPG ALAQGRPMSELNAVIVPIYLYHRYQVEAAAKSLGGLNFRYQVRGEGEAPAVPVAPTEQRRALQALVKTLKPAALDLSDAA LNYLTPGDVGYAGGGTIEELFPNRTGPVFDLAASAEIAAGLTLSAVLDPARANRLVAYAQRSPEALTLKDVIGTLEAAVF VEEKSPRLAALGQIVQTQFVAELISLSRNETASASVKAVTDGYLSGLQTRLAKTKSGQIGTYQDTSRALADMIGKHLAGD DLPASILRPAPPAPAGAPIGSMTGAMGQMEDCWHCPAE >Mature_838_residues MKPAALLAALCLLLTGPALAQDKAEAPPSLEARIETLEARPGFLNLYVDPASGKVLAALPPPDADGVSVRFIYSTGLTAG LGSNPIGLDRGNASSGDILRFRKIGDKVVAEAENWKYRATSGRRDEERSVQQSFANAFLWSTGIEATGADGALLIDLSGF LTRDAADIASALKHGKDAGEYRLAADRSMPDPASALSFPDNAEIDAFLTFETSKPNAQTYATAADARAVTLVLHHSFVRL PDDAYTPRLFDQRTASIGMGFHDFSAPLGAPLVSRFSPRMRLERVNPAAASGPVKEPIVFYVDNGAPEEIRDALIEGAAW WAQGFEAAGFEEAYRVEVLPEGAHPLDVRYNVINWVHRQTRGWSYGGSVMDPRTGEILKANVILGSQRVRQDRMIFEGLA GAAKTGTGAADDPVEVSLARIRQLSAHEVGHTLGFAHNFAASTNDRASVMDYPAPYVRPASGGGLDFRNAYATGLGAWDV FTVKWLYGQFPEGGDNLPALNALVDEAYGAGLRFVSDDHARSKDTGHPFGAVWDNGADPIATLDEVMEVRRIALANFGPG ALAQGRPMSELNAVIVPIYLYHRYQVEAAAKSLGGLNFRYQVRGEGEAPAVPVAPTEQRRALQALVKTLKPAALDLSDAA LNYLTPGDVGYAGGGTIEELFPNRTGPVFDLAASAEIAAGLTLSAVLDPARANRLVAYAQRSPEALTLKDVIGTLEAAVF VEEKSPRLAALGQIVQTQFVAELISLSRNETASASVKAVTDGYLSGLQTRLAKTKSGQIGTYQDTSRALADMIGKHLAGD DLPASILRPAPPAPAGAPIGSMTGAMGQMEDCWHCPAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89087; Mature: 89087
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPAALLAALCLLLTGPALAQDKAEAPPSLEARIETLEARPGFLNLYVDPASGKVLAALP CCHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEECC PPDADGVSVRFIYSTGLTAGLGSNPIGLDRGNASSGDILRFRKIGDKVVAEAENWKYRAT CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEHHHHHCHHHHHHCCCCEEECC SGRRDEERSVQQSFANAFLWSTGIEATGADGALLIDLSGFLTRDAADIASALKHGKDAGE CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHCCHHHHHHHHHCCCCCCC YRLAADRSMPDPASALSFPDNAEIDAFLTFETSKPNAQTYATAADARAVTLVLHHSFVRL EEEECCCCCCCCHHHCCCCCCCCEEEEEEEECCCCCCHHEEECCCCCEEEEEEEHHHHCC PDDAYTPRLFDQRTASIGMGFHDFSAPLGAPLVSRFSPRMRLERVNPAAASGPVKEPIVF CCCCCCCCHHHHHHHHHCCCCHHHCCCCCCHHHHHCCCCHHHHHCCCCCCCCCCCCCEEE YVDNGAPEEIRDALIEGAAWWAQGFEAAGFEEAYRVEVLPEGAHPLDVRYNVINWVHRQT EECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEHHHHHHHHHHC RGWSYGGSVMDPRTGEILKANVILGSQRVRQDRMIFEGLAGAAKTGTGAADDPVEVSLAR CCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH IRQLSAHEVGHTLGFAHNFAASTNDRASVMDYPAPYVRPASGGGLDFRNAYATGLGAWDV HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEECCCCCCCCCHHHHHCCCCCHHH FTVKWLYGQFPEGGDNLPALNALVDEAYGAGLRFVSDDHARSKDTGHPFGAVWDNGADPI EEEEEHHCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHH ATLDEVMEVRRIALANFGPGALAQGRPMSELNAVIVPIYLYHRYQVEAAAKSLGGLNFRY HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCEEEEEEEEEHHHHHHHHHHHHCCCCEEE QVRGEGEAPAVPVAPTEQRRALQALVKTLKPAALDLSDAALNYLTPGDVGYAGGGTIEEL EEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHH FPNRTGPVFDLAASAEIAAGLTLSAVLDPARANRLVAYAQRSPEALTLKDVIGTLEAAVF CCCCCCCEEEECCCCHHHCCCCHHHHHCHHHHCCEEEEECCCCCEEEHHHHHHHHHHEEE VEEKSPRLAALGQIVQTQFVAELISLSRNETASASVKAVTDGYLSGLQTRLAKTKSGQIG EECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC TYQDTSRALADMIGKHLAGDDLPASILRPAPPAPAGAPIGSMTGAMGQMEDCWHCPAE CCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCHHHHHCCCCHHHHHCCCCC >Mature Secondary Structure MKPAALLAALCLLLTGPALAQDKAEAPPSLEARIETLEARPGFLNLYVDPASGKVLAALP CCHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEECC PPDADGVSVRFIYSTGLTAGLGSNPIGLDRGNASSGDILRFRKIGDKVVAEAENWKYRAT CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEHHHHHCHHHHHHCCCCEEECC SGRRDEERSVQQSFANAFLWSTGIEATGADGALLIDLSGFLTRDAADIASALKHGKDAGE CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHCCHHHHHHHHHCCCCCCC YRLAADRSMPDPASALSFPDNAEIDAFLTFETSKPNAQTYATAADARAVTLVLHHSFVRL EEEECCCCCCCCHHHCCCCCCCCEEEEEEEECCCCCCHHEEECCCCCEEEEEEEHHHHCC PDDAYTPRLFDQRTASIGMGFHDFSAPLGAPLVSRFSPRMRLERVNPAAASGPVKEPIVF CCCCCCCCHHHHHHHHHCCCCHHHCCCCCCHHHHHCCCCHHHHHCCCCCCCCCCCCCEEE YVDNGAPEEIRDALIEGAAWWAQGFEAAGFEEAYRVEVLPEGAHPLDVRYNVINWVHRQT EECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEHHHHHHHHHHC RGWSYGGSVMDPRTGEILKANVILGSQRVRQDRMIFEGLAGAAKTGTGAADDPVEVSLAR CCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH IRQLSAHEVGHTLGFAHNFAASTNDRASVMDYPAPYVRPASGGGLDFRNAYATGLGAWDV HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEECCCCCCCCCHHHHHCCCCCHHH FTVKWLYGQFPEGGDNLPALNALVDEAYGAGLRFVSDDHARSKDTGHPFGAVWDNGADPI EEEEEHHCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHH ATLDEVMEVRRIALANFGPGALAQGRPMSELNAVIVPIYLYHRYQVEAAAKSLGGLNFRY HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCEEEEEEEEEHHHHHHHHHHHHCCCCEEE QVRGEGEAPAVPVAPTEQRRALQALVKTLKPAALDLSDAALNYLTPGDVGYAGGGTIEEL EEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHH FPNRTGPVFDLAASAEIAAGLTLSAVLDPARANRLVAYAQRSPEALTLKDVIGTLEAAVF CCCCCCCEEEECCCCHHHCCCCHHHHHCHHHHCCEEEEECCCCCEEEHHHHHHHHHHEEE VEEKSPRLAALGQIVQTQFVAELISLSRNETASASVKAVTDGYLSGLQTRLAKTKSGQIG EECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC TYQDTSRALADMIGKHLAGDDLPASILRPAPPAPAGAPIGSMTGAMGQMEDCWHCPAE CCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCHHHHHCCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA