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The map label for this gene is yfdE [H]

Identifier: 114799131

GI number: 114799131

Start: 1106351

End: 1107499

Strand: Direct

Name: yfdE [H]

Synonym: HNE_1100

Alternate gene names: 114799131

Gene position: 1106351-1107499 (Clockwise)

Preceding gene: 114799465

Following gene: 114798181

Centisome position: 29.86

GC content: 59.97

Gene sequence:

>1149_bases
ATGAAGCGACTGCTCGAAGGCATCCGTATTCTCTCCGTCGAACAGTACGGGGCAGGTCCTTATGGCACCCAGCTGCTTGC
TGATCTCGGCGCGGAGGTGATCAAGGTCGAAGATGGTCAGCGGGGCGGCGACGTTTCCCGTACAGTCGGTCCTTATCTTC
TGGGAGAGGGCGATTCCGACTTCTTTCAGACCTTCTCCAAGGGCAAGAAGTCCATCGACATCGACCTGAAGAGTCAGGAA
GGTCGCGCCCTTTTCGATGATCTCGTGAAGTCTTCCGATGCGGTGGTAAACAATCTGCGCGGCGATCAACCGGCAAAGCT
GGGTCTTGATTATTCCAGACTGCATTCGATCAACCCGAAGATCGTTTGCGCGCATCTTTCTGCCTACGGACGGGATAATT
CCCGCGCCGGCTGGCCAGGCTATGATTATCTGATGCAGGCCGAGGCCGGCTTCATGCTGGCCACGGGCGAGCCGGAAGGG
CCGCCTGTCCGCTGCGGGCTTTCGATCATCGACTTCCATACCGGCAGCCAGCTGGCCACCGCAATTCTGGCGGGTATCCT
CAGCGCGCAGCGCTCCGGCGAGGGCTGTGATGTGGACGTGACACTGTTTGACACGGCCCTGCATCAGCTGTCCTATCCGG
CGACCTGGTATCTCAATCGCGGGCATGCCACTGAGCGCCTTCCGCGGGGAGCGCACCCTTCGATTGCGCCGAGCCAGCTG
GTGAAAACCAAGGATGGCTGGGGCCTGCTCATGTGCCAGACGCCGAAATTCTGGGATCTTTTCTGCGAACTTGCCGAGGG
GCAGCATCTCAAAGCCGACCCGCGCTTTGCCACCAATCCGGCGCGCCACACCAATCTGGCTGAATTGACGGAGGTGGTCG
ACGCGCTTCTCAGCAAACGGACGAGCCAGGAGTGGATCGAACACTTTGCCGGGCAGGTGCCGTTTGCGCCCGTTCTTGAT
ATTCCGCGCGCGCTCGACAATCCGTATCTGGACGAAACCCAGATGATTGAAATTGTCGCGCACCCTTCAAAGCCTGAGGG
GCTCCGGACACTGGCTTCGCCCTTCCGCGTCAATGGGCAGCGGCCTGTTACTTCGCGTGCGCCCGATCTTGGCGAGCACA
CGGCCGAATTCACAAAGGAACCTCGCTGA

Upstream 100 bases:

>100_bases
GGCGAGGGCACGAACGAGATGCAGCGTATCATCATTGCCAAGCAGCTCGTGAAGCGTAATCCGGCCTGATCAGCCCACAA
AAATTAAAGGTATTCCGCAT

Downstream 100 bases:

>100_bases
TGTCACGATTTCCCGCCCACAAGGCGCATGAAGGTGTCTGGGAAGGCAACTACCGCCACCTCGCAGTGGACGGGCAGGAG
GAGGGCCGTTTCCGCTCGCG

Product: CaiB/BaiF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MKRLLEGIRILSVEQYGAGPYGTQLLADLGAEVIKVEDGQRGGDVSRTVGPYLLGEGDSDFFQTFSKGKKSIDIDLKSQE
GRALFDDLVKSSDAVVNNLRGDQPAKLGLDYSRLHSINPKIVCAHLSAYGRDNSRAGWPGYDYLMQAEAGFMLATGEPEG
PPVRCGLSIIDFHTGSQLATAILAGILSAQRSGEGCDVDVTLFDTALHQLSYPATWYLNRGHATERLPRGAHPSIAPSQL
VKTKDGWGLLMCQTPKFWDLFCELAEGQHLKADPRFATNPARHTNLAELTEVVDALLSKRTSQEWIEHFAGQVPFAPVLD
IPRALDNPYLDETQMIEIVAHPSKPEGLRTLASPFRVNGQRPVTSRAPDLGEHTAEFTKEPR

Sequences:

>Translated_382_residues
MKRLLEGIRILSVEQYGAGPYGTQLLADLGAEVIKVEDGQRGGDVSRTVGPYLLGEGDSDFFQTFSKGKKSIDIDLKSQE
GRALFDDLVKSSDAVVNNLRGDQPAKLGLDYSRLHSINPKIVCAHLSAYGRDNSRAGWPGYDYLMQAEAGFMLATGEPEG
PPVRCGLSIIDFHTGSQLATAILAGILSAQRSGEGCDVDVTLFDTALHQLSYPATWYLNRGHATERLPRGAHPSIAPSQL
VKTKDGWGLLMCQTPKFWDLFCELAEGQHLKADPRFATNPARHTNLAELTEVVDALLSKRTSQEWIEHFAGQVPFAPVLD
IPRALDNPYLDETQMIEIVAHPSKPEGLRTLASPFRVNGQRPVTSRAPDLGEHTAEFTKEPR
>Mature_382_residues
MKRLLEGIRILSVEQYGAGPYGTQLLADLGAEVIKVEDGQRGGDVSRTVGPYLLGEGDSDFFQTFSKGKKSIDIDLKSQE
GRALFDDLVKSSDAVVNNLRGDQPAKLGLDYSRLHSINPKIVCAHLSAYGRDNSRAGWPGYDYLMQAEAGFMLATGEPEG
PPVRCGLSIIDFHTGSQLATAILAGILSAQRSGEGCDVDVTLFDTALHQLSYPATWYLNRGHATERLPRGAHPSIAPSQL
VKTKDGWGLLMCQTPKFWDLFCELAEGQHLKADPRFATNPARHTNLAELTEVVDALLSKRTSQEWIEHFAGQVPFAPVLD
IPRALDNPYLDETQMIEIVAHPSKPEGLRTLASPFRVNGQRPVTSRAPDLGEHTAEFTKEPR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=381, Percent_Identity=30.4461942257218, Blast_Score=179, Evalue=4e-45,
Organism=Homo sapiens, GI300863124, Length=325, Percent_Identity=31.3846153846154, Blast_Score=167, Evalue=2e-41,
Organism=Homo sapiens, GI13376042, Length=325, Percent_Identity=28.9230769230769, Blast_Score=136, Evalue=4e-32,
Organism=Homo sapiens, GI300863126, Length=381, Percent_Identity=27.2965879265092, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI42794625, Length=383, Percent_Identity=25.3263707571802, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI266456254, Length=383, Percent_Identity=25.3263707571802, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI266458393, Length=286, Percent_Identity=26.5734265734266, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI266458397, Length=209, Percent_Identity=26.7942583732057, Blast_Score=74, Evalue=3e-13,
Organism=Escherichia coli, GI87082093, Length=381, Percent_Identity=31.758530183727, Blast_Score=199, Evalue=3e-52,
Organism=Escherichia coli, GI1788717, Length=405, Percent_Identity=24.6913580246914, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1786222, Length=333, Percent_Identity=25.2252252252252, Blast_Score=93, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI115535051, Length=335, Percent_Identity=24.7761194029851, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI32564160, Length=329, Percent_Identity=24.9240121580547, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24648431, Length=379, Percent_Identity=35.6200527704486, Blast_Score=204, Evalue=7e-53,
Organism=Drosophila melanogaster, GI24585488, Length=326, Percent_Identity=25.7668711656442, Blast_Score=75, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41846; Mature: 41846

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLLEGIRILSVEQYGAGPYGTQLLADLGAEVIKVEDGQRGGDVSRTVGPYLLGEGDSD
CHHHHHHHHEEEEHHCCCCCHHHHHHHHCCCEEEEECCCCCCCCCHHHCCCEEECCCCHH
FFQTFSKGKKSIDIDLKSQEGRALFDDLVKSSDAVVNNLRGDQPAKLGLDYSRLHSINPK
HHHHHHCCCCEEEEEEECCCCHHHHHHHHCCHHHHHHHCCCCCCHHCCCCHHHHHCCCCE
IVCAHLSAYGRDNSRAGWPGYDYLMQAEAGFMLATGEPEGPPVRCGLSIIDFHTGSQLAT
EEEEEHHHHCCCCCCCCCCCHHHHEECCCCEEEECCCCCCCCEEECEEEEEECCCHHHHH
AILAGILSAQRSGEGCDVDVTLFDTALHQLSYPATWYLNRGHATERLPRGAHPSIAPSQL
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCCCCCHHHH
VKTKDGWGLLMCQTPKFWDLFCELAEGQHLKADPRFATNPARHTNLAELTEVVDALLSKR
HCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
TSQEWIEHFAGQVPFAPVLDIPRALDNPYLDETQMIEIVAHPSKPEGLRTLASPFRVNGQ
CHHHHHHHHHCCCCCCHHHHCHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCC
RPVTSRAPDLGEHTAEFTKEPR
CCCCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MKRLLEGIRILSVEQYGAGPYGTQLLADLGAEVIKVEDGQRGGDVSRTVGPYLLGEGDSD
CHHHHHHHHEEEEHHCCCCCHHHHHHHHCCCEEEEECCCCCCCCCHHHCCCEEECCCCHH
FFQTFSKGKKSIDIDLKSQEGRALFDDLVKSSDAVVNNLRGDQPAKLGLDYSRLHSINPK
HHHHHHCCCCEEEEEEECCCCHHHHHHHHCCHHHHHHHCCCCCCHHCCCCHHHHHCCCCE
IVCAHLSAYGRDNSRAGWPGYDYLMQAEAGFMLATGEPEGPPVRCGLSIIDFHTGSQLAT
EEEEEHHHHCCCCCCCCCCCHHHHEECCCCEEEECCCCCCCCEEECEEEEEECCCHHHHH
AILAGILSAQRSGEGCDVDVTLFDTALHQLSYPATWYLNRGHATERLPRGAHPSIAPSQL
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCCCCCHHHH
VKTKDGWGLLMCQTPKFWDLFCELAEGQHLKADPRFATNPARHTNLAELTEVVDALLSKR
HCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
TSQEWIEHFAGQVPFAPVLDIPRALDNPYLDETQMIEIVAHPSKPEGLRTLASPFRVNGQ
CHHHHHHHHHCCCCCCHHHHCHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCC
RPVTSRAPDLGEHTAEFTKEPR
CCCCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]