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The map label for this gene is ytfM [H]

Identifier: 114798975

GI number: 114798975

Start: 1916843

End: 1918663

Strand: Direct

Name: ytfM [H]

Synonym: HNE_1857

Alternate gene names: 114798975

Gene position: 1916843-1918663 (Clockwise)

Preceding gene: 114799931

Following gene: 114798184

Centisome position: 51.74

GC content: 60.35

Gene sequence:

>1821_bases
ATGATACGCGTCACCTCAAACTCTGGATTTGCTCGGCTCCGGCCGATCGCTGGCGCCTGTCTTCTTGGCGCTACGGCCGC
CTGCGCGTCCTTCAATGGCACGCCGCGCGGCGCAGAGACGCCTACTGGAACCGTATCGCAGGGACACTTTCATCTGCAGG
GCACACCGCCAGCACTCGCCTCACGCGCGAATGCACTTCTGAACACCGGCGACCCGGCCCCGAGAAGTGTGCTGGAGAAA
CGCAACCGCGCTCAGGCTTTGGCCCGCAGCGTTGAAGACCTTCTGGCCTCCGAGGGCTACCTGGCGGCCGAAGTTCGCCC
CGAAGACATGACCACGCTGGAATCCAGCTCCGTTCTGACTGTTGATCCGGGACCGCGGTTCACGGTCGCATCGGTCCGCC
TCGCTGGCGCAGATGCGCTTGATGCTGACACGCGCAAGCTGGTTGATGGCCATCTGGCAGAGCTCCCAGTCGGTTCGCCC
GTCAGAACGGCCAATGTTGAACAAATTGAAGCAGAGCTGATCACGACCCTCCAGGCCCGTGGTTTCGCTTTCGCCTCAAG
TCCCGGTATCGATGCTCTGGCATCCAGAGAGGATGCCAACGTAGAGATCACCTACACAATAGATACCGGCCCCCTCGTGC
GCCTGGGCGACCTTGTCAGCGATGAAACAGACCCGCGGTCCCAAAAAGCCATTCAAGTGCTCAAAACCTGGCGGGAGGGT
GCCACCTACAATCCGCGCACCATCGACCGCCTGCGCGGCCGCTTGCGGTCCAGCGGCCTTTACGAAGGCATTGGTGTCGT
CGTCTCCGACCAGCCCGACGCAGACGGCTATCACACGGTTTCCCTTACGCTTGCAGAAGCCGACCCTCGGTCCGTTAGTT
TTGGTGTCACGGCCTCAACCACCGAAGGCGTTGGTGCAGACGCGCTTTGGGAGCGGCGCAATGTCACCGGCCGCGCAGAC
AAGGTATCCGTTCTCGTGGAAGCCGCCACGCTCGCAAGAAGCGTGACTGTAGGTTACGAACGCCCAAACATCGGGCGCTT
CGGTCGAACGCTTCTTACAGAGGTTGGCGTTCGTCAGGAAGAAACCCAGGCCTATGATCTGGACGGTGCCAAGATAGGGG
CGACCCTTGCACAACCCTTCTCGCGCCAGCTGACATTGTCCGTCGGCGCAGAAATAGACGCGACCCGGATTACAGACCAG
CGAACCCGTATTTACCTTGGTGAGCGCGAACAGGTCACCTTCTCCATCCCGGTCACAGCGACCTATACCGATGTTCGCGA
TCCCCTCGACCCGCAAGAAGGCATTCGGGCATTTGCGGCGGTAGAAAACGGCATCTCGCTCGGCGAAAGCACGCCGGGCT
ATACGCGCATGCAAATCTCTGGCGCGACCTATCGCAAGATTGCAGATGACCTCGTTGCCGCGGTACGCGCTGAGTACGGA
GCTTTTTCAGGCTCCAATTCTGTGCCGACCGATCGTCTGTTCTTTGCCGGTGGCGGCGGCACAGTGCGCGGTTACGAATA
TCAATCGCTGTCACCCACTGATGAGTTTGGAGAGTTCCTGGGCGGGCGCAGCCTGTTCTCCGCATCGGCAGAGTTGCGCT
GGCGCCGGTCCGAGCGGTTCGGTTACGCCGCATTTGTAGACATCGGCGCCGCAAGTGACGATGTCGGCTCGGTCTTTGGA
GAATCGAAAGCCTCAGCCGGCCTCGGCATTCGCTACTATCCGGGTTTTGGTCCGATCAGATTTGATATTGCAGCACCACT
GAATAAACGGGATGGGGATGCGCCGCTGCAGATCTATGTCTCTATTGGGCAAGCCTTCTGA

Upstream 100 bases:

>100_bases
GCCTCAAAGGATCGTAAACCTGAGCTTCATGCTTCCTTTAGGATGAATGGGCCAGTTCTTGCAGGGAAATAAATCAGCAG
AAAGCTGAATATTGGTAACC

Downstream 100 bases:

>100_bases
TGAAAGTGCCCGTTCTTCCCTTCAAGGATTGGCGCCGGCGTCATCCCTGGCTGACGGGCGCCATCATCGCTGCCGCTGGC
GGCGCCGCAGTTATTGGCTC

Product: OMP85 family outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 606; Mature: 606

Protein sequence:

>606_residues
MIRVTSNSGFARLRPIAGACLLGATAACASFNGTPRGAETPTGTVSQGHFHLQGTPPALASRANALLNTGDPAPRSVLEK
RNRAQALARSVEDLLASEGYLAAEVRPEDMTTLESSSVLTVDPGPRFTVASVRLAGADALDADTRKLVDGHLAELPVGSP
VRTANVEQIEAELITTLQARGFAFASSPGIDALASREDANVEITYTIDTGPLVRLGDLVSDETDPRSQKAIQVLKTWREG
ATYNPRTIDRLRGRLRSSGLYEGIGVVVSDQPDADGYHTVSLTLAEADPRSVSFGVTASTTEGVGADALWERRNVTGRAD
KVSVLVEAATLARSVTVGYERPNIGRFGRTLLTEVGVRQEETQAYDLDGAKIGATLAQPFSRQLTLSVGAEIDATRITDQ
RTRIYLGEREQVTFSIPVTATYTDVRDPLDPQEGIRAFAAVENGISLGESTPGYTRMQISGATYRKIADDLVAAVRAEYG
AFSGSNSVPTDRLFFAGGGGTVRGYEYQSLSPTDEFGEFLGGRSLFSASAELRWRRSERFGYAAFVDIGAASDDVGSVFG
ESKASAGLGIRYYPGFGPIRFDIAAPLNKRDGDAPLQIYVSIGQAF

Sequences:

>Translated_606_residues
MIRVTSNSGFARLRPIAGACLLGATAACASFNGTPRGAETPTGTVSQGHFHLQGTPPALASRANALLNTGDPAPRSVLEK
RNRAQALARSVEDLLASEGYLAAEVRPEDMTTLESSSVLTVDPGPRFTVASVRLAGADALDADTRKLVDGHLAELPVGSP
VRTANVEQIEAELITTLQARGFAFASSPGIDALASREDANVEITYTIDTGPLVRLGDLVSDETDPRSQKAIQVLKTWREG
ATYNPRTIDRLRGRLRSSGLYEGIGVVVSDQPDADGYHTVSLTLAEADPRSVSFGVTASTTEGVGADALWERRNVTGRAD
KVSVLVEAATLARSVTVGYERPNIGRFGRTLLTEVGVRQEETQAYDLDGAKIGATLAQPFSRQLTLSVGAEIDATRITDQ
RTRIYLGEREQVTFSIPVTATYTDVRDPLDPQEGIRAFAAVENGISLGESTPGYTRMQISGATYRKIADDLVAAVRAEYG
AFSGSNSVPTDRLFFAGGGGTVRGYEYQSLSPTDEFGEFLGGRSLFSASAELRWRRSERFGYAAFVDIGAASDDVGSVFG
ESKASAGLGIRYYPGFGPIRFDIAAPLNKRDGDAPLQIYVSIGQAF
>Mature_606_residues
MIRVTSNSGFARLRPIAGACLLGATAACASFNGTPRGAETPTGTVSQGHFHLQGTPPALASRANALLNTGDPAPRSVLEK
RNRAQALARSVEDLLASEGYLAAEVRPEDMTTLESSSVLTVDPGPRFTVASVRLAGADALDADTRKLVDGHLAELPVGSP
VRTANVEQIEAELITTLQARGFAFASSPGIDALASREDANVEITYTIDTGPLVRLGDLVSDETDPRSQKAIQVLKTWREG
ATYNPRTIDRLRGRLRSSGLYEGIGVVVSDQPDADGYHTVSLTLAEADPRSVSFGVTASTTEGVGADALWERRNVTGRAD
KVSVLVEAATLARSVTVGYERPNIGRFGRTLLTEVGVRQEETQAYDLDGAKIGATLAQPFSRQLTLSVGAEIDATRITDQ
RTRIYLGEREQVTFSIPVTATYTDVRDPLDPQEGIRAFAAVENGISLGESTPGYTRMQISGATYRKIADDLVAAVRAEYG
AFSGSNSVPTDRLFFAGGGGTVRGYEYQSLSPTDEFGEFLGGRSLFSASAELRWRRSERFGYAAFVDIGAASDDVGSVFG
ESKASAGLGIRYYPGFGPIRFDIAAPLNKRDGDAPLQIYVSIGQAF

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=485, Percent_Identity=24.3298969072165, Blast_Score=93, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 64536; Mature: 64536

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRVTSNSGFARLRPIAGACLLGATAACASFNGTPRGAETPTGTVSQGHFHLQGTPPALA
CEEEECCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCHHHH
SRANALLNTGDPAPRSVLEKRNRAQALARSVEDLLASEGYLAAEVRPEDMTTLESSSVLT
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCCEEE
VDPGPRFTVASVRLAGADALDADTRKLVDGHLAELPVGSPVRTANVEQIEAELITTLQAR
ECCCCCEEEEEEEEECCCCCCCHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
GFAFASSPGIDALASREDANVEITYTIDTGPLVRLGDLVSDETDPRSQKAIQVLKTWREG
CEEEECCCCCHHHHCCCCCCEEEEEEECCCCCEEHHHHHCCCCCCHHHHHHHHHHHHHCC
ATYNPRTIDRLRGRLRSSGLYEGIGVVVSDQPDADGYHTVSLTLAEADPRSVSFGVTAST
CCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEECC
TEGVGADALWERRNVTGRADKVSVLVEAATLARSVTVGYERPNIGRFGRTLLTEVGVRQE
CCCCCCHHHHHHCCCCCCCHHEEHEEHHHHHHHEEEECCCCCCCCHHHHHHHHHHCCCCC
ETQAYDLDGAKIGATLAQPFSRQLTLSVGAEIDATRITDQRTRIYLGEREQVTFSIPVTA
CCCEEECCCCHHHHHHHCCCCCEEEEEECCCCCEEEECCCCEEEEECCCCEEEEEEEEEE
TYTDVRDPLDPQEGIRAFAAVENGISLGESTPGYTRMQISGATYRKIADDLVAAVRAEYG
EECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHC
AFSGSNSVPTDRLFFAGGGGTVRGYEYQSLSPTDEFGEFLGGRSLFSASAELRWRRSERF
CCCCCCCCCCCEEEEECCCCCEECEEECCCCCHHHHHHHHCCCHHHHCCHHHEEEHHCCC
GYAAFVDIGAASDDVGSVFGESKASAGLGIRYYPGFGPIRFDIAAPLNKRDGDAPLQIYV
CEEEEEEECCCCCHHHHHHCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCEEEEE
SIGQAF
EECCCC
>Mature Secondary Structure
MIRVTSNSGFARLRPIAGACLLGATAACASFNGTPRGAETPTGTVSQGHFHLQGTPPALA
CEEEECCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCHHHH
SRANALLNTGDPAPRSVLEKRNRAQALARSVEDLLASEGYLAAEVRPEDMTTLESSSVLT
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCCEEE
VDPGPRFTVASVRLAGADALDADTRKLVDGHLAELPVGSPVRTANVEQIEAELITTLQAR
ECCCCCEEEEEEEEECCCCCCCHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
GFAFASSPGIDALASREDANVEITYTIDTGPLVRLGDLVSDETDPRSQKAIQVLKTWREG
CEEEECCCCCHHHHCCCCCCEEEEEEECCCCCEEHHHHHCCCCCCHHHHHHHHHHHHHCC
ATYNPRTIDRLRGRLRSSGLYEGIGVVVSDQPDADGYHTVSLTLAEADPRSVSFGVTAST
CCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEECC
TEGVGADALWERRNVTGRADKVSVLVEAATLARSVTVGYERPNIGRFGRTLLTEVGVRQE
CCCCCCHHHHHHCCCCCCCHHEEHEEHHHHHHHEEEECCCCCCCCHHHHHHHHHHCCCCC
ETQAYDLDGAKIGATLAQPFSRQLTLSVGAEIDATRITDQRTRIYLGEREQVTFSIPVTA
CCCEEECCCCHHHHHHHCCCCCEEEEEECCCCCEEEECCCCEEEEECCCCEEEEEEEEEE
TYTDVRDPLDPQEGIRAFAAVENGISLGESTPGYTRMQISGATYRKIADDLVAAVRAEYG
EECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHC
AFSGSNSVPTDRLFFAGGGGTVRGYEYQSLSPTDEFGEFLGGRSLFSASAELRWRRSERF
CCCCCCCCCCCEEEEECCCCCEECEEECCCCCHHHHHHHHCCCHHHHCCHHHEEEHHCCC
GYAAFVDIGAASDDVGSVFGESKASAGLGIRYYPGFGPIRFDIAAPLNKRDGDAPLQIYV
CEEEEEEECCCCCHHHHHHCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCEEEEE
SIGQAF
EECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]