| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is yheS [H]
Identifier: 114798817
GI number: 114798817
Start: 3081786
End: 3083699
Strand: Reverse
Name: yheS [H]
Synonym: HNE_2924
Alternate gene names: 114798817
Gene position: 3083699-3081786 (Counterclockwise)
Preceding gene: 114799984
Following gene: 114799834
Centisome position: 83.23
GC content: 64.05
Gene sequence:
>1914_bases ATGTTGGAAATCAAGAACCTCGATTACCGGGTCGAAGCCCGCCCGCTGTTTGATGCTGCCTCTGCGCGCGTGGCGGCCGG CTGGAAAGTCGGCCTCATCGGACGCAACGGCACGGGCAAGTCCACGCTCCTGCGCCTCATCCGCGAGGAAATCGCCTCGC CGGGCAAGGACAGCCCCATCCGCCTGCAGAATGGCGCCCGCCTCGGCTGGGTCGCTCAGGAAGTCGCCCCCACCGACCAG ACCATCCTCGACGTCGTGCTGGAGGCAGACGCCGAGCGCCACGCCCTGATGCTGGAATCCGAAACCGCGACCGACCCCGA CCGGATCGGCGACATCCACGCGCGCCTCTTGGATATCGACGCCTGGACCGCCGAGCCCCGCGCCGCCGAAATCCTCATGG GCCTCGGTTTCCAGACTGCAGACCTCGCCCGCGCCACGCGCGAATTCTCCGGCGGCTGGCGCATGCGCGCCGCCATCGCG GGCGCGCTTTTCGCGCAGCCAGACCTGCTGCTGCTCGACGAGCCAACCAACTATCTTGACCTTGAAGGCGCCGCCTGGCT CGAGGGGTATCTCCGCCGTTATCCCAACACCGTCCTCATCGTCAGCCACGACCGCGAAATGCTCAACCGCTCGGTCACCC ATACGATGGCGCTGGAACACCGTAAGCTGATGATCACGCCCGGCGGCTATGATGACTGGCTGAAACTGCGCGCGGCCAAG CTCGCCCAGCTCGAAAGCCAGAAAACCAAACAGGACAAGGATCGCGCCCACCTCCAATCCTTCGTCGACCGCTTCCGCGC CAAGGCCTCCAAAGCCCGCCAGGCGCAGTCGCGCATCAAGATGCTGGAGAAGATGCAGGAAATCTCGATTCCTTTAGAGG AGCGCGCCGCGCCCTTCAATTTCCCCGCGCCCGAAAACATGCTCGCCCCGCCACTTCTGGAAATTGAAGACGCCTCGATG GGCTATGGTCCGCAGGCGGTCATTCTCAAGGGCGTGAAACTCCGCATCGATCCGGACGACCGCATCGCCATCATCGGCAC AAACGGGCAGGGCAAGACCACGCTCGTCAAATCGATTGCCGAGCGCCTGCCGCTGCTTGGCGGCAAGCGCCGGATGCCGA AGAAAGTCGAGATCGGCTATTTCTCGCAGGACCAACTCGATGAACTCAGCATCGGCGACACGGTCCTCGAACACGTCATG CGCGCGCTGCCCGCCAACACGCCCGTCGCCAAACAGCGTTCGGTCGCCGCGCAACTCGGCTTTTCCCATGAGAAGGTAGA AACCAAGGTCGAGAAGCTCTCGGGCGGCGAAAAAGTCCGTCTTATTCTGGGCCTCATCGGGCTCGCCCGCCCGCAAGTCC TCATCCTCGACGAGCCGACGTCTCACCTGGATATCGACAGCCGCGAAGCGCTGATCTACGCGCTGAACGACTTTGCCGGC GCGGTCCTTCTGATCACGCACGATGTCTATCTCGCCGAGGCCACCGCCGACCAGCTCTGGCTCGTCAAGGACGGCAAGGT CGCGCCCTATGCCGGCGACCTCTCCGACTACCGCGCCCTCGTCATGAGCTCAGACCGCGACAAAGGCGGCGCCGCCAAGC CCGCCGCCCCCGCTGCCGTTGTGGTGGAAGACCCCGTCGACAAAGCCGAACAACGCCGCCGCGCCTCCCAGGCCCGCGAA TCCGCCGCCCCGCTGAAAAAGAAGGCCGACGCCGCCGAAAAAGCCTTCGAGAAAGCAAACGGCCGTATCAAGACGATTGA CCTCGAACTCTCCAAATCCGGCCTCTCCCCGCAAAAGATCACCGAGCTTTCCGTCGAACGCGGCAAACTCGAAGCCGAAG CCGCCAAAGCCGAAACCGAATGGCTCGCTGCGCTGGACGCCTATGAAAGCGCCGTAAAAGAGGCGGTGGGCTAA
Upstream 100 bases:
>100_bases ACATGACGAGAAAAGGGCCAGCGTGCAGCCTGCGTCATTATGAGCGGTCATTTGCGCAAAGCGGGCTGTTTTTTGCCGCC GGGCGGGTTAAAGCCCCGCC
Downstream 100 bases:
>100_bases GCCCTCACCTCCCACGCCCCGCCCCAAGCGCAACGCCACTTACCCCTCTCCCGCTTGCGGGAGAGGAGGGGCCCGCACTC GAAGAGTGTGGGAGGTGAGG
Product: ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 637; Mature: 637
Protein sequence:
>637_residues MLEIKNLDYRVEARPLFDAASARVAAGWKVGLIGRNGTGKSTLLRLIREEIASPGKDSPIRLQNGARLGWVAQEVAPTDQ TILDVVLEADAERHALMLESETATDPDRIGDIHARLLDIDAWTAEPRAAEILMGLGFQTADLARATREFSGGWRMRAAIA GALFAQPDLLLLDEPTNYLDLEGAAWLEGYLRRYPNTVLIVSHDREMLNRSVTHTMALEHRKLMITPGGYDDWLKLRAAK LAQLESQKTKQDKDRAHLQSFVDRFRAKASKARQAQSRIKMLEKMQEISIPLEERAAPFNFPAPENMLAPPLLEIEDASM GYGPQAVILKGVKLRIDPDDRIAIIGTNGQGKTTLVKSIAERLPLLGGKRRMPKKVEIGYFSQDQLDELSIGDTVLEHVM RALPANTPVAKQRSVAAQLGFSHEKVETKVEKLSGGEKVRLILGLIGLARPQVLILDEPTSHLDIDSREALIYALNDFAG AVLLITHDVYLAEATADQLWLVKDGKVAPYAGDLSDYRALVMSSDRDKGGAAKPAAPAAVVVEDPVDKAEQRRRASQARE SAAPLKKKADAAEKAFEKANGRIKTIDLELSKSGLSPQKITELSVERGKLEAEAAKAETEWLAALDAYESAVKEAVG
Sequences:
>Translated_637_residues MLEIKNLDYRVEARPLFDAASARVAAGWKVGLIGRNGTGKSTLLRLIREEIASPGKDSPIRLQNGARLGWVAQEVAPTDQ TILDVVLEADAERHALMLESETATDPDRIGDIHARLLDIDAWTAEPRAAEILMGLGFQTADLARATREFSGGWRMRAAIA GALFAQPDLLLLDEPTNYLDLEGAAWLEGYLRRYPNTVLIVSHDREMLNRSVTHTMALEHRKLMITPGGYDDWLKLRAAK LAQLESQKTKQDKDRAHLQSFVDRFRAKASKARQAQSRIKMLEKMQEISIPLEERAAPFNFPAPENMLAPPLLEIEDASM GYGPQAVILKGVKLRIDPDDRIAIIGTNGQGKTTLVKSIAERLPLLGGKRRMPKKVEIGYFSQDQLDELSIGDTVLEHVM RALPANTPVAKQRSVAAQLGFSHEKVETKVEKLSGGEKVRLILGLIGLARPQVLILDEPTSHLDIDSREALIYALNDFAG AVLLITHDVYLAEATADQLWLVKDGKVAPYAGDLSDYRALVMSSDRDKGGAAKPAAPAAVVVEDPVDKAEQRRRASQARE SAAPLKKKADAAEKAFEKANGRIKTIDLELSKSGLSPQKITELSVERGKLEAEAAKAETEWLAALDAYESAVKEAVG >Mature_637_residues MLEIKNLDYRVEARPLFDAASARVAAGWKVGLIGRNGTGKSTLLRLIREEIASPGKDSPIRLQNGARLGWVAQEVAPTDQ TILDVVLEADAERHALMLESETATDPDRIGDIHARLLDIDAWTAEPRAAEILMGLGFQTADLARATREFSGGWRMRAAIA GALFAQPDLLLLDEPTNYLDLEGAAWLEGYLRRYPNTVLIVSHDREMLNRSVTHTMALEHRKLMITPGGYDDWLKLRAAK LAQLESQKTKQDKDRAHLQSFVDRFRAKASKARQAQSRIKMLEKMQEISIPLEERAAPFNFPAPENMLAPPLLEIEDASM GYGPQAVILKGVKLRIDPDDRIAIIGTNGQGKTTLVKSIAERLPLLGGKRRMPKKVEIGYFSQDQLDELSIGDTVLEHVM RALPANTPVAKQRSVAAQLGFSHEKVETKVEKLSGGEKVRLILGLIGLARPQVLILDEPTSHLDIDSREALIYALNDFAG AVLLITHDVYLAEATADQLWLVKDGKVAPYAGDLSDYRALVMSSDRDKGGAAKPAAPAAVVVEDPVDKAEQRRRASQARE SAAPLKKKADAAEKAFEKANGRIKTIDLELSKSGLSPQKITELSVERGKLEAEAAKAETEWLAALDAYESAVKEAVG
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=539, Percent_Identity=36.734693877551, Blast_Score=345, Evalue=5e-95, Organism=Homo sapiens, GI27881506, Length=535, Percent_Identity=33.4579439252336, Blast_Score=297, Evalue=2e-80, Organism=Homo sapiens, GI10947137, Length=530, Percent_Identity=33.5849056603774, Blast_Score=296, Evalue=4e-80, Organism=Homo sapiens, GI10947135, Length=546, Percent_Identity=32.6007326007326, Blast_Score=252, Evalue=9e-67, Organism=Homo sapiens, GI69354671, Length=546, Percent_Identity=32.6007326007326, Blast_Score=251, Evalue=1e-66, Organism=Escherichia coli, GI1789751, Length=645, Percent_Identity=39.0697674418605, Blast_Score=430, Evalue=1e-121, Organism=Escherichia coli, GI1787041, Length=528, Percent_Identity=32.5757575757576, Blast_Score=291, Evalue=1e-79, Organism=Escherichia coli, GI1787182, Length=524, Percent_Identity=29.7709923664122, Blast_Score=208, Evalue=9e-55, Organism=Escherichia coli, GI2367384, Length=535, Percent_Identity=29.5327102803738, Blast_Score=172, Evalue=8e-44, Organism=Escherichia coli, GI48994943, Length=521, Percent_Identity=26.8714011516315, Blast_Score=86, Evalue=9e-18, Organism=Escherichia coli, GI1788506, Length=555, Percent_Identity=23.7837837837838, Blast_Score=82, Evalue=8e-17, Organism=Escherichia coli, GI1788165, Length=201, Percent_Identity=30.8457711442786, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI1787029, Length=217, Percent_Identity=27.6497695852535, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI48994997, Length=223, Percent_Identity=26.9058295964126, Blast_Score=63, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17553372, Length=539, Percent_Identity=37.847866419295, Blast_Score=336, Evalue=2e-92, Organism=Caenorhabditis elegans, GI17555318, Length=538, Percent_Identity=33.8289962825279, Blast_Score=292, Evalue=5e-79, Organism=Caenorhabditis elegans, GI17559834, Length=561, Percent_Identity=32.620320855615, Blast_Score=279, Evalue=3e-75, Organism=Caenorhabditis elegans, GI71996809, Length=205, Percent_Identity=29.7560975609756, Blast_Score=67, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6321121, Length=565, Percent_Identity=35.2212389380531, Blast_Score=340, Evalue=4e-94, Organism=Saccharomyces cerevisiae, GI6320874, Length=531, Percent_Identity=31.8267419962335, Blast_Score=266, Evalue=7e-72, Organism=Saccharomyces cerevisiae, GI6325030, Length=402, Percent_Identity=27.6119402985075, Blast_Score=111, Evalue=4e-25, Organism=Saccharomyces cerevisiae, GI6324314, Length=379, Percent_Identity=25.8575197889182, Blast_Score=100, Evalue=6e-22, Organism=Saccharomyces cerevisiae, GI6323278, Length=379, Percent_Identity=23.7467018469657, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24666836, Length=531, Percent_Identity=37.4764595103578, Blast_Score=339, Evalue=3e-93, Organism=Drosophila melanogaster, GI24641342, Length=545, Percent_Identity=33.9449541284404, Blast_Score=293, Evalue=2e-79, Organism=Drosophila melanogaster, GI24642252, Length=533, Percent_Identity=31.8949343339587, Blast_Score=281, Evalue=1e-75, Organism=Drosophila melanogaster, GI18859989, Length=533, Percent_Identity=31.8949343339587, Blast_Score=281, Evalue=1e-75,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 69885; Mature: 69885
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEIKNLDYRVEARPLFDAASARVAAGWKVGLIGRNGTGKSTLLRLIREEIASPGKDSPI CCEECCCCEEEECCCCHHHHCCCEECCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCE RLQNGARLGWVAQEVAPTDQTILDVVLEADAERHALMLESETATDPDRIGDIHARLLDID EECCCCEECCHHHHHCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHEEEEE AWTAEPRAAEILMGLGFQTADLARATREFSGGWRMRAAIAGALFAQPDLLLLDEPTNYLD CCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCEEEEECCCCEEE LEGAAWLEGYLRRYPNTVLIVSHDREMLNRSVTHTMALEHRKLMITPGGYDDWLKLRAAK CCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH LAQLESQKTKQDKDRAHLQSFVDRFRAKASKARQAQSRIKMLEKMQEISIPLEERAAPFN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCC FPAPENMLAPPLLEIEDASMGYGPQAVILKGVKLRIDPDDRIAIIGTNGQGKTTLVKSIA CCCCCCCCCCCCEEEECCCCCCCCCEEEEECEEEEECCCCCEEEEECCCCCHHHHHHHHH ERLPLLGGKRRMPKKVEIGYFSQDQLDELSIGDTVLEHVMRALPANTPVAKQRSVAAQLG HHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHC FSHEKVETKVEKLSGGEKVRLILGLIGLARPQVLILDEPTSHLDIDSREALIYALNDFAG CCHHHHHHHHHHHCCCCCEEHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEHHHCC AVLLITHDVYLAEATADQLWLVKDGKVAPYAGDLSDYRALVMSSDRDKGGAAKPAAPAAV EEEEEEECEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHEECCCCCCCCCCCCCCCEEE VVEDPVDKAEQRRRASQARESAAPLKKKADAAEKAFEKANGRIKTIDLELSKSGLSPQKI EEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCHHHH TELSVERGKLEAEAAKAETEWLAALDAYESAVKEAVG HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLEIKNLDYRVEARPLFDAASARVAAGWKVGLIGRNGTGKSTLLRLIREEIASPGKDSPI CCEECCCCEEEECCCCHHHHCCCEECCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCE RLQNGARLGWVAQEVAPTDQTILDVVLEADAERHALMLESETATDPDRIGDIHARLLDID EECCCCEECCHHHHHCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHEEEEE AWTAEPRAAEILMGLGFQTADLARATREFSGGWRMRAAIAGALFAQPDLLLLDEPTNYLD CCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCEEEEECCCCEEE LEGAAWLEGYLRRYPNTVLIVSHDREMLNRSVTHTMALEHRKLMITPGGYDDWLKLRAAK CCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH LAQLESQKTKQDKDRAHLQSFVDRFRAKASKARQAQSRIKMLEKMQEISIPLEERAAPFN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCC FPAPENMLAPPLLEIEDASMGYGPQAVILKGVKLRIDPDDRIAIIGTNGQGKTTLVKSIA CCCCCCCCCCCCEEEECCCCCCCCCEEEEECEEEEECCCCCEEEEECCCCCHHHHHHHHH ERLPLLGGKRRMPKKVEIGYFSQDQLDELSIGDTVLEHVMRALPANTPVAKQRSVAAQLG HHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHC FSHEKVETKVEKLSGGEKVRLILGLIGLARPQVLILDEPTSHLDIDSREALIYALNDFAG CCHHHHHHHHHHHCCCCCEEHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEHHHCC AVLLITHDVYLAEATADQLWLVKDGKVAPYAGDLSDYRALVMSSDRDKGGAAKPAAPAAV EEEEEEECEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHEECCCCCCCCCCCCCCCEEE VVEDPVDKAEQRRRASQARESAAPLKKKADAAEKAFEKANGRIKTIDLELSKSGLSPQKI EEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCHHHH TELSVERGKLEAEAAKAETEWLAALDAYESAVKEAVG HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]