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The map label for this gene is ldcA [C]

Identifier: 114798662

GI number: 114798662

Start: 1148422

End: 1149261

Strand: Direct

Name: ldcA [C]

Synonym: HNE_1137

Alternate gene names: 114798662

Gene position: 1148422-1149261 (Clockwise)

Preceding gene: 114799307

Following gene: 114798986

Centisome position: 31.0

GC content: 65.24

Gene sequence:

>840_bases
ATGAGCAGACGCAAAGTACGCATCGGCATTGTCGCGCCCGGCAGGGCTCTCGATCAGTCTATTGCGGACCGCGTGACCGC
CCTTGCAGGCAACTCCACAGAGCTCATCTTCCACTCCCAATGTTTCCTGCGCGATGGTCATTTCGCCGGGCCGGATCAGG
CGCGCTCCGATGCCTTCGTTGAGTTTGCCAATGATCCTACGCTCGACGCGATCTGGTTTGCGCGGGGGGGGTATGGGGCT
TGCCGGTTGCTGGATACGGCGTTCGAGCGGCTGGGCGAGGCGGCGCGGCGCAAGACGTATCTGGGGTATAGCGACACCGG
GTTCCTGCTGGCGCGGCTGGCGCGGGAGGGGATTGGCCGGGTGGCGCATGGGCCGATGCCGGCGGATATTCTGCGGGAGG
GCGGCGAGGCCGCTGTGCGCCGGGCGATCGGGTTTCTGAGCGGGGCGGACGGCGAGGCGGGCGTTGAGCCCTCCACGCTC
GCGCCCGGAAAGTACGCGGCGTATAATATCAGTGTACTGGCGAGTCTGATCGGCACGGTGCACGCGCCGGACCTTTCCGG
GTCTACGTTGCTGATCGAGGATGTGGGCGAGTATCATTACCGGCTCGACCGGCTGATGTTCACGCTGACTTCCAGCGAAA
CGGTGCGCGCAGTGGCGGGCATCCGGCTGGGGCGGTGCGGGCCCATCCCGGTAAATGATGTGGATTTCGGGCAGAGCGAG
GAGGAAATTGCGCGGCATTGGTGCGCGCGGGGTGGGATTTCGTATCTCGGCCGGGCGGATATTGGCCATGATGTGGGGAA
CAAGATTGTGGTGTTCGGGGCGCGGGGCGTGGGGGCATAA

Upstream 100 bases:

>100_bases
CGGTTGAGGTTCGTGCGTATCACACCAATCAAGTGCCGCATGAAAAAGCTGATATTGTTTTCCTGCGCTATGAATGCCCC
GATTGATCTGAAAGAACATT

Downstream 100 bases:

>100_bases
AAAAGGCGGGCATCGCATTTGCGAGCCCGCCTTTTTGTTTGAGTGCGGATGGCCGATCAGAGGTTCTTGACGATATCCTC
GACCATCTTCTTCGCGTCGG

Product: LD-carboxypeptidase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSRRKVRIGIVAPGRALDQSIADRVTALAGNSTELIFHSQCFLRDGHFAGPDQARSDAFVEFANDPTLDAIWFARGGYGA
CRLLDTAFERLGEAARRKTYLGYSDTGFLLARLAREGIGRVAHGPMPADILREGGEAAVRRAIGFLSGADGEAGVEPSTL
APGKYAAYNISVLASLIGTVHAPDLSGSTLLIEDVGEYHYRLDRLMFTLTSSETVRAVAGIRLGRCGPIPVNDVDFGQSE
EEIARHWCARGGISYLGRADIGHDVGNKIVVFGARGVGA

Sequences:

>Translated_279_residues
MSRRKVRIGIVAPGRALDQSIADRVTALAGNSTELIFHSQCFLRDGHFAGPDQARSDAFVEFANDPTLDAIWFARGGYGA
CRLLDTAFERLGEAARRKTYLGYSDTGFLLARLAREGIGRVAHGPMPADILREGGEAAVRRAIGFLSGADGEAGVEPSTL
APGKYAAYNISVLASLIGTVHAPDLSGSTLLIEDVGEYHYRLDRLMFTLTSSETVRAVAGIRLGRCGPIPVNDVDFGQSE
EEIARHWCARGGISYLGRADIGHDVGNKIVVFGARGVGA
>Mature_278_residues
SRRKVRIGIVAPGRALDQSIADRVTALAGNSTELIFHSQCFLRDGHFAGPDQARSDAFVEFANDPTLDAIWFARGGYGAC
RLLDTAFERLGEAARRKTYLGYSDTGFLLARLAREGIGRVAHGPMPADILREGGEAAVRRAIGFLSGADGEAGVEPSTLA
PGKYAAYNISVLASLIGTVHAPDLSGSTLLIEDVGEYHYRLDRLMFTLTSSETVRAVAGIRLGRCGPIPVNDVDFGQSEE
EIARHWCARGGISYLGRADIGHDVGNKIVVFGARGVGA

Specific function: L,D-carboxypeptidase [C]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

Organism=Escherichia coli, GI1787441, Length=239, Percent_Identity=28.0334728033473, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 29777; Mature: 29646

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRKVRIGIVAPGRALDQSIADRVTALAGNSTELIFHSQCFLRDGHFAGPDQARSDAFV
CCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECEEEEECCCCCCCCCCCCCCEE
EFANDPTLDAIWFARGGYGACRLLDTAFERLGEAARRKTYLGYSDTGFLLARLAREGIGR
EECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
VAHGPMPADILREGGEAAVRRAIGFLSGADGEAGVEPSTLAPGKYAAYNISVLASLIGTV
CCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
HAPDLSGSTLLIEDVGEYHYRLDRLMFTLTSSETVRAVAGIRLGRCGPIPVNDVDFGQSE
CCCCCCCCEEEEEHHHHHHHHHHHHHHEECCCHHHHHHHCEEECCCCCCCCCCCCCCCCH
EEIARHWCARGGISYLGRADIGHDVGNKIVVFGARGVGA
HHHHHHHHHHCCHHHHCCCCCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure 
SRRKVRIGIVAPGRALDQSIADRVTALAGNSTELIFHSQCFLRDGHFAGPDQARSDAFV
CCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECEEEEECCCCCCCCCCCCCCEE
EFANDPTLDAIWFARGGYGACRLLDTAFERLGEAARRKTYLGYSDTGFLLARLAREGIGR
EECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
VAHGPMPADILREGGEAAVRRAIGFLSGADGEAGVEPSTLAPGKYAAYNISVLASLIGTV
CCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
HAPDLSGSTLLIEDVGEYHYRLDRLMFTLTSSETVRAVAGIRLGRCGPIPVNDVDFGQSE
CCCCCCCCEEEEEHHHHHHHHHHHHHHEECCCHHHHHHHCEEECCCCCCCCCCCCCCCCH
EEIARHWCARGGISYLGRADIGHDVGNKIVVFGARGVGA
HHHHHHHHHHCCHHHHCCCCCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]