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The map label for this gene is tdcF [C]

Identifier: 114798476

GI number: 114798476

Start: 459047

End: 459484

Strand: Reverse

Name: tdcF [C]

Synonym: HNE_0465

Alternate gene names: 114798476

Gene position: 459484-459047 (Counterclockwise)

Preceding gene: 114798371

Following gene: 114798079

Centisome position: 12.4

GC content: 64.61

Gene sequence:

>438_bases
ATGAACCCCACACTCTGTTCCGCCCTGCTGGGCGCCCTGCTGTTGACCGGATGCGTCACCGCGCCAGAGGCCGCGCCCCC
GGCTGTGCCTGCGGGCAAGACAGTCCTGGTGCCCGGCAATGCACTTTACAGCGCCGCCGTCGGCTATGGCGACACGGTGT
ATCTGGCCGGGGTGATCGGGCGCAGCGAGACCGGGGATGTGAGCGAGGCAGCGCGCCAAGCGATGGACGCGGTGAAAGGC
AATATCGAAAAGGCCGGCGGCACGATGGGCGACTTGCTGAAATGCACGATCTTCATGACCGACATTGAACAGTATGGCCC
GGTCAATGAGGTGTATGCGGATTATTTCGAGGCCGATCCGCCGGCGCGGACGGCGATTGCGGTATCTGCGTTGCCGTTCG
GGGCGCTGGTGGAGGTGGAGTGTATTGCGGCGCGGTAG

Upstream 100 bases:

>100_bases
TGGCCAGTCAATTGCCGATGGCGTCGCGCCCCTGCCCCTCCCCCTTCGGGGGATAAGGCGGTAGGGTTGCGGCGTGATTT
GCAATTGGAGGCGCCCGCCC

Downstream 100 bases:

>100_bases
GGCCCTCAACCCTGCGCCTCTCCCGCACGCGGGAGAGGCGTTTAAGGGTCAGGCGTTGTAGTTCAGCTTCAACCCGGCTT
CGGCCCAGCGGGTTTTGATC

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MNPTLCSALLGALLLTGCVTAPEAAPPAVPAGKTVLVPGNALYSAAVGYGDTVYLAGVIGRSETGDVSEAARQAMDAVKG
NIEKAGGTMGDLLKCTIFMTDIEQYGPVNEVYADYFEADPPARTAIAVSALPFGALVEVECIAAR

Sequences:

>Translated_145_residues
MNPTLCSALLGALLLTGCVTAPEAAPPAVPAGKTVLVPGNALYSAAVGYGDTVYLAGVIGRSETGDVSEAARQAMDAVKG
NIEKAGGTMGDLLKCTIFMTDIEQYGPVNEVYADYFEADPPARTAIAVSALPFGALVEVECIAAR
>Mature_145_residues
MNPTLCSALLGALLLTGCVTAPEAAPPAVPAGKTVLVPGNALYSAAVGYGDTVYLAGVIGRSETGDVSEAARQAMDAVKG
NIEKAGGTMGDLLKCTIFMTDIEQYGPVNEVYADYFEADPPARTAIAVSALPFGALVEVECIAAR

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=107, Percent_Identity=36.4485981308411, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87082213, Length=111, Percent_Identity=35.1351351351351, Blast_Score=68, Evalue=2e-13,
Organism=Escherichia coli, GI87082396, Length=111, Percent_Identity=36.036036036036, Blast_Score=67, Evalue=4e-13,
Organism=Escherichia coli, GI1787245, Length=97, Percent_Identity=36.0824742268041, Blast_Score=67, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71982068, Length=106, Percent_Identity=40.5660377358491, Blast_Score=79, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI71982075, Length=106, Percent_Identity=40.5660377358491, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI25148896, Length=106, Percent_Identity=40.5660377358491, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322138, Length=111, Percent_Identity=30.6306306306306, Blast_Score=73, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6320899, Length=101, Percent_Identity=32.6732673267327, Blast_Score=72, Evalue=4e-14,
Organism=Drosophila melanogaster, GI19921376, Length=107, Percent_Identity=36.4485981308411, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14782; Mature: 14782

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPTLCSALLGALLLTGCVTAPEAAPPAVPAGKTVLVPGNALYSAAVGYGDTVYLAGVIG
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCCEEEEEEECC
RSETGDVSEAARQAMDAVKGNIEKAGGTMGDLLKCTIFMTDIEQYGPVNEVYADYFEADP
CCCCCCHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
PARTAIAVSALPFGALVEVECIAAR
CCHHEEEECCCCCCCEEEEEEEECC
>Mature Secondary Structure
MNPTLCSALLGALLLTGCVTAPEAAPPAVPAGKTVLVPGNALYSAAVGYGDTVYLAGVIG
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCCEEEEEEECC
RSETGDVSEAARQAMDAVKGNIEKAGGTMGDLLKCTIFMTDIEQYGPVNEVYADYFEADP
CCCCCCHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
PARTAIAVSALPFGALVEVECIAAR
CCHHEEEECCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]