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The map label for this gene is cydB [H]

Identifier: 114798433

GI number: 114798433

Start: 1698289

End: 1699431

Strand: Reverse

Name: cydB [H]

Synonym: HNE_1658

Alternate gene names: 114798433

Gene position: 1699431-1698289 (Counterclockwise)

Preceding gene: 114799451

Following gene: 114797694

Centisome position: 45.87

GC content: 64.92

Gene sequence:

>1143_bases
ATGGACATCCCACTCGACTATGCCACGCTGAAGGTCATCTGGTGGGCGCTCGTCGGCGTCCTCTTCATCGGCTACGCGGT
GACGGATGGTTATGATCTGGGCGTTGCCACCCTTCTCCCCTTCGTCGGCAAGACCGATGATGAGCGCCGCCTCGTCATCA
ACTCCATTGCCCCGATGTGGGAAGGCCACCAGGTCTGGCTGATCACCGGCGGCGGCGCGCTGTTTGCCGCCTGGCCCTAT
GTCTACGCCATCAGTTTCTCGGGCTTTTACCTGGCCATGTTTGTCGTGCTTGCCGCGCTGATCCTGCGGCCGGTGGGCTT
CAAATACCGCTCCAAACGCGCCGGCAAACAATGGCGGCGCAACTGGGACTGGGCCCTCTTTACCGGCGGCTTCGTCCCGG
CACTGATCTTCGGCGTTGCCCTCGGCAACGTGTTGCAGGGAGTCCCGTTCGACATCGACCGCACCATGCGCGCCACCTAT
GACGGCGGCCTCCTCGGCCTGCTGAACCCGTTCGCCCTGCTCGCGGGTCTGGCCTCCGTCGCCATGCTGGTGGTGCACGG
CGCCTCCTGGCTGGTGGTGAAGATCGAGCATGGCCCGGTGATGGACCGCGCCATCCTGTATGGCCGCCTGGCCGCCATCG
CCGTCATCGCCTTCTACGCCATCGCCGGCATCTGGCTCTGGCAGTCCGGCATGGGCTACCGCATCGTGTCCGACATCGAC
CCCCACGGCCCGGCAAACCCGCTGCGCAAGGATGTGGTCGTCGAGGCCGGCGCGTGGATGGGCAATTATGCCCGCTATCC
TTTCCTGTTGCTGGCCCCGCTCGCCGGCTTCGGCGGCAGCCTGCTTGCGCTCTGGGCGCTGGGGCGCAAATCCTCGCTTG
CACTGGCAGGTTCGGGCTTCGCATCGGCCGGCATCGTCGCGTCCGTGGGCGCCTCGATGTTCCCCTTCATCCTGCCCAGC
AGCGTGAACCCGTCGGTGAGCCTCACCGTCTGGGACAGTTCTTCCAGCCATATCACGCTGTTCATCATGCTGATCGCCAC
CGCGATCTTCCTGCCGCTCGTGCTCGCTTACACGGCCTGGGTCTTCAAGGTTCTCTGGGGCCGCCTGACCGTCGAAGAAG
CCACCAGCGAAGGCAAATACTGA

Upstream 100 bases:

>100_bases
CAAGGCCGGGCCTGGTGGACGCATCCTCCCGGAGGGTGTGACCAGCGAAGGCCCCACCGGTGGCCGTCCGGTTCAATTCG
ACGTCTGAGGGAGAACACAC

Downstream 100 bases:

>100_bases
GGAGACGAAAACAATGTGGTACTTCACCTGGATACTCGGCCTCGGCTTCGCGCTGACCTTCAGCATCCTCAACGCTATGT
GGAACGAGGTCTCCATGGGC

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MDIPLDYATLKVIWWALVGVLFIGYAVTDGYDLGVATLLPFVGKTDDERRLVINSIAPMWEGHQVWLITGGGALFAAWPY
VYAISFSGFYLAMFVVLAALILRPVGFKYRSKRAGKQWRRNWDWALFTGGFVPALIFGVALGNVLQGVPFDIDRTMRATY
DGGLLGLLNPFALLAGLASVAMLVVHGASWLVVKIEHGPVMDRAILYGRLAAIAVIAFYAIAGIWLWQSGMGYRIVSDID
PHGPANPLRKDVVVEAGAWMGNYARYPFLLLAPLAGFGGSLLALWALGRKSSLALAGSGFASAGIVASVGASMFPFILPS
SVNPSVSLTVWDSSSSHITLFIMLIATAIFLPLVLAYTAWVFKVLWGRLTVEEATSEGKY

Sequences:

>Translated_380_residues
MDIPLDYATLKVIWWALVGVLFIGYAVTDGYDLGVATLLPFVGKTDDERRLVINSIAPMWEGHQVWLITGGGALFAAWPY
VYAISFSGFYLAMFVVLAALILRPVGFKYRSKRAGKQWRRNWDWALFTGGFVPALIFGVALGNVLQGVPFDIDRTMRATY
DGGLLGLLNPFALLAGLASVAMLVVHGASWLVVKIEHGPVMDRAILYGRLAAIAVIAFYAIAGIWLWQSGMGYRIVSDID
PHGPANPLRKDVVVEAGAWMGNYARYPFLLLAPLAGFGGSLLALWALGRKSSLALAGSGFASAGIVASVGASMFPFILPS
SVNPSVSLTVWDSSSSHITLFIMLIATAIFLPLVLAYTAWVFKVLWGRLTVEEATSEGKY
>Mature_380_residues
MDIPLDYATLKVIWWALVGVLFIGYAVTDGYDLGVATLLPFVGKTDDERRLVINSIAPMWEGHQVWLITGGGALFAAWPY
VYAISFSGFYLAMFVVLAALILRPVGFKYRSKRAGKQWRRNWDWALFTGGFVPALIFGVALGNVLQGVPFDIDRTMRATY
DGGLLGLLNPFALLAGLASVAMLVVHGASWLVVKIEHGPVMDRAILYGRLAAIAVIAFYAIAGIWLWQSGMGYRIVSDID
PHGPANPLRKDVVVEAGAWMGNYARYPFLLLAPLAGFGGSLLALWALGRKSSLALAGSGFASAGIVASVGASMFPFILPS
SVNPSVSLTVWDSSSSHITLFIMLIATAIFLPLVLAYTAWVFKVLWGRLTVEEATSEGKY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=370, Percent_Identity=48.6486486486487, Blast_Score=355, Evalue=4e-99,
Organism=Escherichia coli, GI1787213, Length=369, Percent_Identity=46.6124661246612, Blast_Score=337, Evalue=1e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41146; Mature: 41146

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIPLDYATLKVIWWALVGVLFIGYAVTDGYDLGVATLLPFVGKTDDERRLVINSIAPMW
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHCCCC
EGHQVWLITGGGALFAAWPYVYAISFSGFYLAMFVVLAALILRPVGFKYRSKRAGKQWRR
CCCEEEEEECCCHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
NWDWALFTGGFVPALIFGVALGNVLQGVPFDIDRTMRATYDGGLLGLLNPFALLAGLASV
CCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHH
AMLVVHGASWLVVKIEHGPVMDRAILYGRLAAIAVIAFYAIAGIWLWQSGMGYRIVSDID
HHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
PHGPANPLRKDVVVEAGAWMGNYARYPFLLLAPLAGFGGSLLALWALGRKSSLALAGSGF
CCCCCCCHHHHHEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCEEEECCCC
ASAGIVASVGASMFPFILPSSVNPSVSLTVWDSSSSHITLFIMLIATAIFLPLVLAYTAW
CCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VFKVLWGRLTVEEATSEGKY
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDIPLDYATLKVIWWALVGVLFIGYAVTDGYDLGVATLLPFVGKTDDERRLVINSIAPMW
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHCCCC
EGHQVWLITGGGALFAAWPYVYAISFSGFYLAMFVVLAALILRPVGFKYRSKRAGKQWRR
CCCEEEEEECCCHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
NWDWALFTGGFVPALIFGVALGNVLQGVPFDIDRTMRATYDGGLLGLLNPFALLAGLASV
CCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHH
AMLVVHGASWLVVKIEHGPVMDRAILYGRLAAIAVIAFYAIAGIWLWQSGMGYRIVSDID
HHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
PHGPANPLRKDVVVEAGAWMGNYARYPFLLLAPLAGFGGSLLALWALGRKSSLALAGSGF
CCCCCCCHHHHHEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCEEEECCCC
ASAGIVASVGASMFPFILPSSVNPSVSLTVWDSSSSHITLFIMLIATAIFLPLVLAYTAW
CCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VFKVLWGRLTVEEATSEGKY
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]