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The map label for this gene is xerC [H]

Identifier: 114798167

GI number: 114798167

Start: 3463731

End: 3464630

Strand: Direct

Name: xerC [H]

Synonym: HNE_3308

Alternate gene names: 114798167

Gene position: 3463731-3464630 (Clockwise)

Preceding gene: 114798569

Following gene: 114799603

Centisome position: 93.49

GC content: 67.33

Gene sequence:

>900_bases
ATGGATGTCCTGCCCGCCTTTCTTGATTATCTCACCCGTGAGCGTCGCATGGCGACCAAGACGGTTGAGGCCTATGGCAG
CGACCTCTCTTTCTTCCTCGCCTTTCTGCGCGTGCATATGGGCGCGGAGCCGTCGCCCGCCCTGCTGGCAGACGTACGCG
CCCGCGACATCCGCGCCTATCTCGCCGAGCGCCGGCGTGAGGGGCTGTCGGATGCAACCGTCGCCCGCATCCTCTCTTCC
ATCAAGGCGCTCTATCGCTGGCTCGACCGTGCCCACGGCGTCGGCAATGCCGAAGTCGGCTACCTGCAAGGCCCCCGGCG
CCCGCAGCGCCTGCCCCGCCCGGTGTCCATCGACGCTGCCAAAGACCTGATCTCGGAAGCCGAAAACGAGCCCGATCAGG
AACCGTGGATCGGCGCGCGGGACGCGGCCGTGCTGTCCCTGCTCTATGGCGGCGGACTACGTATTTCCGAAGCGCTCAGC
CTGACAGGCGCTGACGTGCCCGCGCCCGAGCGCCTGCGCATCAAAGGCAAAGGCGGCAAGGTGCGCATCGTGCCGCTGAT
CCCGGCGGTGCGCGACGCCATTCATGTGTATGCGGATATCTGTCCCTGGGCGCTGACACGGGACAAGCCCCTCTTCCGGG
GCGCCAAGGGCGGAGCTCTCAATCCGCGCCTCATCCAGGGGCTCATGCAGCGAATGCGCGCCTATCTCGGCCTGCCGGAC
ACCGCCACGCCCCACGCCCTGCGCCATGCCTTCGCCACCCATCTTCTGGCAAATGGCGCAGACCTGCGCGCCATTCAGAC
CCTGCTCGGCCACGCTTCGCTTTCGACCACGCAGGTCTATACCGGCATTGACTCCTCGCGCCTGCGCGAAGTCCACGCCG
CCGCCCATCCGCGCGCCTGA

Upstream 100 bases:

>100_bases
CGGGCTGGCCGCGCTTCCTTTCAGCCCTTGAAGACCTCCTCTCGCGCGAAGCCTAACGCCCCTTCAGCCCTCCTTAACGG
GCCCGTGGCAGGCTGGCGCG

Downstream 100 bases:

>100_bases
GGCAGCTCAGGGCGCCAATTGAGACGTCAGCGCGTCGGCCAGCAGCCGCCCGCTCTCCGTCAACGAAAGCTCCGACCCCT
GAAGTTTCACCCAGCCCTGC

Product: putative tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDVLPAFLDYLTRERRMATKTVEAYGSDLSFFLAFLRVHMGAEPSPALLADVRARDIRAYLAERRREGLSDATVARILSS
IKALYRWLDRAHGVGNAEVGYLQGPRRPQRLPRPVSIDAAKDLISEAENEPDQEPWIGARDAAVLSLLYGGGLRISEALS
LTGADVPAPERLRIKGKGGKVRIVPLIPAVRDAIHVYADICPWALTRDKPLFRGAKGGALNPRLIQGLMQRMRAYLGLPD
TATPHALRHAFATHLLANGADLRAIQTLLGHASLSTTQVYTGIDSSRLREVHAAAHPRA

Sequences:

>Translated_299_residues
MDVLPAFLDYLTRERRMATKTVEAYGSDLSFFLAFLRVHMGAEPSPALLADVRARDIRAYLAERRREGLSDATVARILSS
IKALYRWLDRAHGVGNAEVGYLQGPRRPQRLPRPVSIDAAKDLISEAENEPDQEPWIGARDAAVLSLLYGGGLRISEALS
LTGADVPAPERLRIKGKGGKVRIVPLIPAVRDAIHVYADICPWALTRDKPLFRGAKGGALNPRLIQGLMQRMRAYLGLPD
TATPHALRHAFATHLLANGADLRAIQTLLGHASLSTTQVYTGIDSSRLREVHAAAHPRA
>Mature_299_residues
MDVLPAFLDYLTRERRMATKTVEAYGSDLSFFLAFLRVHMGAEPSPALLADVRARDIRAYLAERRREGLSDATVARILSS
IKALYRWLDRAHGVGNAEVGYLQGPRRPQRLPRPVSIDAAKDLISEAENEPDQEPWIGARDAAVLSLLYGGGLRISEALS
LTGADVPAPERLRIKGKGGKVRIVPLIPAVRDAIHVYADICPWALTRDKPLFRGAKGGALNPRLIQGLMQRMRAYLGLPD
TATPHALRHAFATHLLANGADLRAIQTLLGHASLSTTQVYTGIDSSRLREVHAAAHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=304, Percent_Identity=36.5131578947368, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1790244, Length=295, Percent_Identity=31.864406779661, Blast_Score=145, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 32736; Mature: 32736

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVLPAFLDYLTRERRMATKTVEAYGSDLSFFLAFLRVHMGAEPSPALLADVRARDIRAY
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LAERRREGLSDATVARILSSIKALYRWLDRAHGVGNAEVGYLQGPRRPQRLPRPVSIDAA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCHHHH
KDLISEAENEPDQEPWIGARDAAVLSLLYGGGLRISEALSLTGADVPAPERLRIKGKGGK
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCEEEECCCCE
VRIVPLIPAVRDAIHVYADICPWALTRDKPLFRGAKGGALNPRLIQGLMQRMRAYLGLPD
EEEEECCHHHHHHHHHHHHHCCHHHCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC
TATPHALRHAFATHLLANGADLRAIQTLLGHASLSTTQVYTGIDSSRLREVHAAAHPRA
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDVLPAFLDYLTRERRMATKTVEAYGSDLSFFLAFLRVHMGAEPSPALLADVRARDIRAY
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LAERRREGLSDATVARILSSIKALYRWLDRAHGVGNAEVGYLQGPRRPQRLPRPVSIDAA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCHHHH
KDLISEAENEPDQEPWIGARDAAVLSLLYGGGLRISEALSLTGADVPAPERLRIKGKGGK
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCEEEECCCCE
VRIVPLIPAVRDAIHVYADICPWALTRDKPLFRGAKGGALNPRLIQGLMQRMRAYLGLPD
EEEEECCHHHHHHHHHHHHHCCHHHCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC
TATPHALRHAFATHLLANGADLRAIQTLLGHASLSTTQVYTGIDSSRLREVHAAAHPRA
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]