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The map label for this gene is ybiH [H]

Identifier: 114798028

GI number: 114798028

Start: 1570120

End: 1570773

Strand: Direct

Name: ybiH [H]

Synonym: HNE_1537

Alternate gene names: 114798028

Gene position: 1570120-1570773 (Clockwise)

Preceding gene: 114799431

Following gene: 114798504

Centisome position: 42.38

GC content: 57.65

Gene sequence:

>654_bases
ATGGCAAAGCGCAGTGATCCTCGAAGCGTTGAAACGCGCGAACGGCTCGTCGAGGCCGCTATCGAACTGTTCGGCGTTGT
GGGATTCGACGGAACATCCACCCGGGCGATCGCCGGCATGGCAGGCGTGTCCCTTGCCGCGATACCGTATCATTTCGTGA
CCAAGGAGAACCTCTATCTCGCAGCTGCGTCCTCGATTGCAGAGCAGGTATCGCAAAGGCTTGAGCCAGCGCTGAGCCGA
CTTGAAGACGAATTGCTCAACCGCGCCCTGAGCCGCAAGCAGGCGATTGAGCTGCTGGAGACGGCTTTTGGCCCTTTTGT
GATGATGCTGGCAAGCAGTGACAGCGAAAAATGGGCCCGGTTCATGCTTCGTGAACAGGCCACTCCCACAGAAGCTTTTG
AAATACTCTATGCCAGCAATGTTGGCCGCTTCTTCCGTGCCATCATCCATCTTACAGCAATCGCAAGTGGCGACGTGCCG
GGGTCCCGGGCATCCCGTGTTCGGGGGTTGACGCTTCTCGGTCAGGCGCTCGCTTTCCGCGCCGCCCGGGCGTTGTCTTT
GAGAACTCTGGAGCGCGAGGATCTGGGGCCTGAGGAAATCGTGTCCATCACTTCTTTAATTCGCGAAAATATACGCCTGT
TGCAGCATCTTTAG

Upstream 100 bases:

>100_bases
GCCACTGTCCGAGGTTGCGCGCAGTACAGCACCGCTCATCGTGATCGCAATGGTGACGCTGCCGGCCTCTGCCTGGTTAC
TCAGAAAGAAGACATCATAG

Downstream 100 bases:

>100_bases
CGGGGTATTGGCACAGACCTTCCGATGGGGTCAGTCTGACCCGATGCTGCCGACAGTCCAGATGGTTTCCTGTTCCAGTG
CTCTTCAGCCGCCGTCAAAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MAKRSDPRSVETRERLVEAAIELFGVVGFDGTSTRAIAGMAGVSLAAIPYHFVTKENLYLAAASSIAEQVSQRLEPALSR
LEDELLNRALSRKQAIELLETAFGPFVMMLASSDSEKWARFMLREQATPTEAFEILYASNVGRFFRAIIHLTAIASGDVP
GSRASRVRGLTLLGQALAFRAARALSLRTLEREDLGPEEIVSITSLIRENIRLLQHL

Sequences:

>Translated_217_residues
MAKRSDPRSVETRERLVEAAIELFGVVGFDGTSTRAIAGMAGVSLAAIPYHFVTKENLYLAAASSIAEQVSQRLEPALSR
LEDELLNRALSRKQAIELLETAFGPFVMMLASSDSEKWARFMLREQATPTEAFEILYASNVGRFFRAIIHLTAIASGDVP
GSRASRVRGLTLLGQALAFRAARALSLRTLEREDLGPEEIVSITSLIRENIRLLQHL
>Mature_216_residues
AKRSDPRSVETRERLVEAAIELFGVVGFDGTSTRAIAGMAGVSLAAIPYHFVTKENLYLAAASSIAEQVSQRLEPALSRL
EDELLNRALSRKQAIELLETAFGPFVMMLASSDSEKWARFMLREQATPTEAFEILYASNVGRFFRAIIHLTAIASGDVPG
SRASRVRGLTLLGQALAFRAARALSLRTLEREDLGPEEIVSITSLIRENIRLLQHL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=180, Percent_Identity=30, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23886; Mature: 23755

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRSDPRSVETRERLVEAAIELFGVVGFDGTSTRAIAGMAGVSLAAIPYHFVTKENLYL
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
AAASSIAEQVSQRLEPALSRLEDELLNRALSRKQAIELLETAFGPFVMMLASSDSEKWAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
FMLREQATPTEAFEILYASNVGRFFRAIIHLTAIASGDVPGSRASRVRGLTLLGQALAFR
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
AARALSLRTLEREDLGPEEIVSITSLIRENIRLLQHL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKRSDPRSVETRERLVEAAIELFGVVGFDGTSTRAIAGMAGVSLAAIPYHFVTKENLYL
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
AAASSIAEQVSQRLEPALSRLEDELLNRALSRKQAIELLETAFGPFVMMLASSDSEKWAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
FMLREQATPTEAFEILYASNVGRFFRAIIHLTAIASGDVPGSRASRVRGLTLLGQALAFR
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
AARALSLRTLEREDLGPEEIVSITSLIRENIRLLQHL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]