Click here to switch to the map view.

The map label for this gene is rsmB [H]

Identifier: 114798023

GI number: 114798023

Start: 1851448

End: 1852755

Strand: Direct

Name: rsmB [H]

Synonym: HNE_1806

Alternate gene names: 114798023

Gene position: 1851448-1852755 (Clockwise)

Preceding gene: 114800464

Following gene: 114797176

Centisome position: 49.97

GC content: 61.47

Gene sequence:

>1308_bases
ATGCGCAATGGCGGACGCATCAGCGCAGCAATTTCAGTCCTTACAGACGTGCTGGAGCGTCATCAGCCGGTGAAAATTGC
TGTGCGTGATTGGGGAAAGAGCGCGCGGTATGCCGGCTCCAAGGATCGCGCCTGGGTGTCGGGTCTCGTTCTGGATACCC
TGCGGCGCCGCAATTCCACAGCTCAGCGTATGGGCTTCACCGATCCGCGCGCGCTTGTCCTGGGCACGCTCCGGTTTGTC
TGGGACTGGCCCGCCGCTGACATCGAACAGGCATGTTACGACGAACACGGTCCCACACCTTTGACCAATGCGGAGCGCGA
TGCCCTCCTGAATGCGTCTGACTTTGCCGCCCCCATCCACGTTCAGGGAGATTTCCCAGAATGGATGACGCCGCATATGG
AGCGTGCGTTCGGCGAAGATACTGTGGCTGAAGCGCAGGCCATGGCGGTTCGCGCAGATGTGGATCTGCGCGTCAACGCC
CTGAAGACGGACACTGAGAAGGCGGCATTGCCGCTCAACACCGTGCGCGCCGAACCCTCCAAACTGCTCACCAATGCGTT
TCACATTCCCGCCCGTGACCCTACCCAGCGGGAAGATTCGCTGGAAAACATTCCCGCCTTTTCCAAAGGCTGGGTCGAGG
TCCAGGACGCCGGCAGTCAGATCGCGGCAGCGGCCGCTAATGCAAAACCGGGCGAACAGGTGCTGGATTTTTGCGCCGGC
GGGGGCGGCAAGACCCTCGCGCTTGCCGCTCCGATGGGCGGCAAGGGACAGATCTTCGCCTATGACATCGACAGCAAACG
CCTCTCTGCGCTGGTCCCGCGCCTGAAACGTTCGGGCACCCACAATGTTCAACTCGTTCATCCGAGCGAAGGCACGAGTC
TTGATCCGCTTGTCGAGCAGATGGACCTCGTCTTTGTCGATGCGCCGTGCACGGGTACGGGGACCTGGCGCCGCCGCCCG
GACTCAAAGTGGCGCGTCAGACCCAATCAGCTCGGAAAACGTATCGAAGACCAGCGCGGCATTCTCATTGATGCAGCGCG
ATTTGTGAAACCCGGCGGCCGCCTTCTGTACGCGACATGCTCATTCCTGATCGAAGAAGATGAGGACCGCGTCGCAGAGT
TTCTGTCTGGAGATACACGCTTTACGGAAGAAGACGCCGCTGAGGCCGCCATCGCATCCGGCCTTTTGACGGATCACGGC
GCCGAGATCGTGCGGAAGTATCGTGGCCCGACAGGCAGCGTCCGGCTGACACCTCTCAGGGCCAGCACGGACGGCTTTTT
CTTCGCTGTCCTGCGGCGAAGCGCCTAG

Upstream 100 bases:

>100_bases
CCTTCAGGCAGGTGAATATCCAGCATCTTCAGACCTTTGTTGTTCCCTCTGGCCGTATAGGAGGCTAACACCCTCGCTTT
CGCAACCGGAGAGCCGAAAC

Downstream 100 bases:

>100_bases
CGATCAGTCCGCACGCGCTATTGCATCTCCTGAGTAGTCAGAAATGGCGGCGGTAAGCGCAGCAATCTGCTCGCGCTCCT
TCAACGTGATTTCCGGTTTC

Product: NOL1/NOP2/sun domain-containing protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MRNGGRISAAISVLTDVLERHQPVKIAVRDWGKSARYAGSKDRAWVSGLVLDTLRRRNSTAQRMGFTDPRALVLGTLRFV
WDWPAADIEQACYDEHGPTPLTNAERDALLNASDFAAPIHVQGDFPEWMTPHMERAFGEDTVAEAQAMAVRADVDLRVNA
LKTDTEKAALPLNTVRAEPSKLLTNAFHIPARDPTQREDSLENIPAFSKGWVEVQDAGSQIAAAAANAKPGEQVLDFCAG
GGGKTLALAAPMGGKGQIFAYDIDSKRLSALVPRLKRSGTHNVQLVHPSEGTSLDPLVEQMDLVFVDAPCTGTGTWRRRP
DSKWRVRPNQLGKRIEDQRGILIDAARFVKPGGRLLYATCSFLIEEDEDRVAEFLSGDTRFTEEDAAEAAIASGLLTDHG
AEIVRKYRGPTGSVRLTPLRASTDGFFFAVLRRSA

Sequences:

>Translated_435_residues
MRNGGRISAAISVLTDVLERHQPVKIAVRDWGKSARYAGSKDRAWVSGLVLDTLRRRNSTAQRMGFTDPRALVLGTLRFV
WDWPAADIEQACYDEHGPTPLTNAERDALLNASDFAAPIHVQGDFPEWMTPHMERAFGEDTVAEAQAMAVRADVDLRVNA
LKTDTEKAALPLNTVRAEPSKLLTNAFHIPARDPTQREDSLENIPAFSKGWVEVQDAGSQIAAAAANAKPGEQVLDFCAG
GGGKTLALAAPMGGKGQIFAYDIDSKRLSALVPRLKRSGTHNVQLVHPSEGTSLDPLVEQMDLVFVDAPCTGTGTWRRRP
DSKWRVRPNQLGKRIEDQRGILIDAARFVKPGGRLLYATCSFLIEEDEDRVAEFLSGDTRFTEEDAAEAAIASGLLTDHG
AEIVRKYRGPTGSVRLTPLRASTDGFFFAVLRRSA
>Mature_435_residues
MRNGGRISAAISVLTDVLERHQPVKIAVRDWGKSARYAGSKDRAWVSGLVLDTLRRRNSTAQRMGFTDPRALVLGTLRFV
WDWPAADIEQACYDEHGPTPLTNAERDALLNASDFAAPIHVQGDFPEWMTPHMERAFGEDTVAEAQAMAVRADVDLRVNA
LKTDTEKAALPLNTVRAEPSKLLTNAFHIPARDPTQREDSLENIPAFSKGWVEVQDAGSQIAAAAANAKPGEQVLDFCAG
GGGKTLALAAPMGGKGQIFAYDIDSKRLSALVPRLKRSGTHNVQLVHPSEGTSLDPLVEQMDLVFVDAPCTGTGTWRRRP
DSKWRVRPNQLGKRIEDQRGILIDAARFVKPGGRLLYATCSFLIEEDEDRVAEFLSGDTRFTEEDAAEAAIASGLLTDHG
AEIVRKYRGPTGSVRLTPLRASTDGFFFAVLRRSA

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI23199998, Length=246, Percent_Identity=31.3008130081301, Blast_Score=96, Evalue=1e-19,
Organism=Homo sapiens, GI270288816, Length=246, Percent_Identity=31.3008130081301, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI270288818, Length=246, Percent_Identity=31.3008130081301, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI8922322, Length=246, Percent_Identity=31.3008130081301, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI76150625, Length=240, Percent_Identity=30.4166666666667, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI76150623, Length=240, Percent_Identity=30.4166666666667, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI32698918, Length=179, Percent_Identity=32.4022346368715, Blast_Score=85, Evalue=2e-16,
Organism=Homo sapiens, GI11545785, Length=201, Percent_Identity=30.3482587064677, Blast_Score=73, Evalue=6e-13,
Organism=Homo sapiens, GI39995082, Length=183, Percent_Identity=31.1475409836066, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI301336155, Length=183, Percent_Identity=31.1475409836066, Blast_Score=69, Evalue=9e-12,
Organism=Escherichia coli, GI2367212, Length=332, Percent_Identity=30.421686746988, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI87081985, Length=227, Percent_Identity=28.6343612334802, Blast_Score=90, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17536757, Length=239, Percent_Identity=30.5439330543933, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI115534021, Length=244, Percent_Identity=29.0983606557377, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71998419, Length=244, Percent_Identity=29.0983606557377, Blast_Score=73, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6324268, Length=239, Percent_Identity=27.6150627615063, Blast_Score=82, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6319447, Length=288, Percent_Identity=28.125, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI22024126, Length=239, Percent_Identity=29.2887029288703, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24668781, Length=238, Percent_Identity=26.890756302521, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21356513, Length=238, Percent_Identity=26.890756302521, Blast_Score=82, Evalue=9e-16,
Organism=Drosophila melanogaster, GI21355201, Length=210, Percent_Identity=30.4761904761905, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI19920494, Length=280, Percent_Identity=27.8571428571429, Blast_Score=70, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 47553; Mature: 47553

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNGGRISAAISVLTDVLERHQPVKIAVRDWGKSARYAGSKDRAWVSGLVLDTLRRRNST
CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCH
AQRMGFTDPRALVLGTLRFVWDWPAADIEQACYDEHGPTPLTNAERDALLNASDFAAPIH
HHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEE
VQGDFPEWMTPHMERAFGEDTVAEAQAMAVRADVDLRVNALKTDTEKAALPLNTVRAEPS
ECCCCCHHCCHHHHHHCCCHHHHHHHHHEEEECCCEEEEEEECCCHHHCCCHHHHCCCHH
KLLTNAFHIPARDPTQREDSLENIPAFSKGWVEVQDAGSQIAAAAANAKPGEQVLDFCAG
HHHHHHEECCCCCCCCHHHHHHHCCCCCCCCEEEECCCCHHHHHHCCCCCHHHHHHHHCC
GGGKTLALAAPMGGKGQIFAYDIDSKRLSALVPRLKRSGTHNVQLVHPSEGTSLDPLVEQ
CCCCEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHC
MDLVFVDAPCTGTGTWRRRPDSKWRVRPNQLGKRIEDQRGILIDAARFVKPGGRLLYATC
CCEEEEECCCCCCCCCCCCCCCCCEECHHHHHHHHHHCCCEEEEHHHHHCCCCCEEEEEH
SFLIEEDEDRVAEFLSGDTRFTEEDAAEAAIASGLLTDHGAEIVRKYRGPTGSVRLTPLR
HHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
ASTDGFFFAVLRRSA
CCCCCEEEEEEECCC
>Mature Secondary Structure
MRNGGRISAAISVLTDVLERHQPVKIAVRDWGKSARYAGSKDRAWVSGLVLDTLRRRNST
CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCH
AQRMGFTDPRALVLGTLRFVWDWPAADIEQACYDEHGPTPLTNAERDALLNASDFAAPIH
HHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEE
VQGDFPEWMTPHMERAFGEDTVAEAQAMAVRADVDLRVNALKTDTEKAALPLNTVRAEPS
ECCCCCHHCCHHHHHHCCCHHHHHHHHHEEEECCCEEEEEEECCCHHHCCCHHHHCCCHH
KLLTNAFHIPARDPTQREDSLENIPAFSKGWVEVQDAGSQIAAAAANAKPGEQVLDFCAG
HHHHHHEECCCCCCCCHHHHHHHCCCCCCCCEEEECCCCHHHHHHCCCCCHHHHHHHHCC
GGGKTLALAAPMGGKGQIFAYDIDSKRLSALVPRLKRSGTHNVQLVHPSEGTSLDPLVEQ
CCCCEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHC
MDLVFVDAPCTGTGTWRRRPDSKWRVRPNQLGKRIEDQRGILIDAARFVKPGGRLLYATC
CCEEEEECCCCCCCCCCCCCCCCCEECHHHHHHHHHHCCCEEEEHHHHHCCCCCEEEEEH
SFLIEEDEDRVAEFLSGDTRFTEEDAAEAAIASGLLTDHGAEIVRKYRGPTGSVRLTPLR
HHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
ASTDGFFFAVLRRSA
CCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]