| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is pckA [H]
Identifier: 114797578
GI number: 114797578
Start: 2864742
End: 2866334
Strand: Direct
Name: pckA [H]
Synonym: HNE_2705
Alternate gene names: 114797578
Gene position: 2864742-2866334 (Clockwise)
Preceding gene: 114799724
Following gene: 114798142
Centisome position: 77.32
GC content: 61.46
Gene sequence:
>1593_bases ATGAGCGATACCGTAGCAATCCTGGCCGAGCTGGGTGTGCAGACAAAATCCATTAAGAAAAACTGGAACGAGGCACGCCT GTATGAAACGGCCGTTGCCAGCGGCGAAGCCCGCGTTGCCAAGGGCGGCGCGCTGGTGGTCGAAACCGGGCAACACACGG GCCGCTCCGCCAAAGACAAGTTCACGGTGCGCGACGCGACGACCGAGAAAACCGTCTGGTGGGACAACAATGCCTCGATG ACGCCCGAGCAGTTCGACGCTCTGTGGACGGACTTCAAAGCGCACCTCGCCAAGCAGGACATGTATTCGCAGGACCTCTT CGGCGGCGCAGATCTCGACTATCGCCTGCCCGTCACTGTGGTGACCGAGTTTGCCTGGCACTCTCTCTTCATTCGCCACC TTCTGCGCCTTCCGACAACGGATGAGCTCTCTGGCTTCAAGACCGAATTCACGATCATCAACTGCCCGAGCTTCCGCGCC GATCCGGCCAAGCATGGCTGCCGCAGCGAGACCGTGATCGCGGTGAACTTCGCCAAGCGCCTCGTGCTCATCGGCGGCAC CTCCTATGCTGGCGAAACGAAGAAGTCGGTCTTCACGATCCTCAACTACCTGCTGCCCAACCAGGGCGTGATGCCGATGC ACTGCTCGGTCAACACATCTGACAAGGACGATGCGGCGATCTTCTTTGGCCTTTCAGGCACCGGCAAGACGACGCTTTCG GCAGACGCTTCGCGCACACTGATCGGCGATGATGAGCATGGCTGGTCGGAGAACGGTCTCTTCAACTTTGAAGGCGGCTG CTACGCCAAGATGATCAAGCTGTCGGCCGAGGCCGAGCCTGAAATCTTTGCCACCACGAAACAGTGGGGCACGGTGCTCG AGAACGTCGTGATGGACGCGACAACGCGCGAACTCGATCTCGACTCGGCGGCGCTGGCGGAAAATTCGCGCGGCGCCTAT CCGATCGAAGCGATTCCGAACGCGTCGCTGACGGGCCGTTGCGGCCAGCCGAAAAACCTCATCATGCTGACGGCTGACGC CTATGGCATCATGCCGCCGATCGCCAAGCTGACGCCGGCGCAGGCGATGTATCACTTCCTCTCCGGCTATACCGCGCGTG TCGCGGGCACCGAGAAAGGCGTGACCGAGCCTTCGGCCACCTTCTCCACCTGCTTTGGCGGCCCGTTCATGCCGCGTCAC CCGTCGGAATATGGCAACCTGCTGCGCGAGCTGATCGCGCGTTACAATGTGGATTGCTGGCTGGTCTCCACCGGCTGGAC CGGCGGGCCTTATGGCCAGGGCAACCGGATGCCGATCAAAGCAACGCGCGCGCTGCTGAACGCCGCGCTTGATGGCTCGC TCAACACGGTCGAGTTCCGCAAGGATGAGACGTTCGGCTTCCTCGTGCCGGTTTCTGTGCCGGGCGTGGACGCCAAGATC CTCGATCCGCGTTCGACCTGGGCTGACCCGGCCGCTTATGACAAGCAGGCGGCGAAACTGGCCGAAGAGTTCGTCGAGAA CTTCAAGAAGTTCGAAGCCTATGTGGATGAGGCGGTGAAAGCCTCGGCGCCCAAGCCGAAGGTTACCGCGTAA
Upstream 100 bases:
>100_bases GGGCACGGATGTTGCAAAAGCTTCTCACCAAGCGCTAATGACCCCTATGGTGGCAGGGCCGGGGCGCCCTAAGAGTTCGC AAAAATTCGAGGACAGCGTA
Downstream 100 bases:
>100_bases CCCCACACACTGCCTCTCGCAAAACAAGAGCCCGCCCGGTAAAACCTGGCGGGCTTTTTTTGATCTGAACTGCCCGTTTA CGTCAACGGAAGGCTGGCCT
Product: phosphoenolpyruvate carboxykinase
Products: NA
Alternate protein names: PEP carboxykinase; PEPCK; Phosphoenolpyruvate carboxylase [H]
Number of amino acids: Translated: 530; Mature: 529
Protein sequence:
>530_residues MSDTVAILAELGVQTKSIKKNWNEARLYETAVASGEARVAKGGALVVETGQHTGRSAKDKFTVRDATTEKTVWWDNNASM TPEQFDALWTDFKAHLAKQDMYSQDLFGGADLDYRLPVTVVTEFAWHSLFIRHLLRLPTTDELSGFKTEFTIINCPSFRA DPAKHGCRSETVIAVNFAKRLVLIGGTSYAGETKKSVFTILNYLLPNQGVMPMHCSVNTSDKDDAAIFFGLSGTGKTTLS ADASRTLIGDDEHGWSENGLFNFEGGCYAKMIKLSAEAEPEIFATTKQWGTVLENVVMDATTRELDLDSAALAENSRGAY PIEAIPNASLTGRCGQPKNLIMLTADAYGIMPPIAKLTPAQAMYHFLSGYTARVAGTEKGVTEPSATFSTCFGGPFMPRH PSEYGNLLRELIARYNVDCWLVSTGWTGGPYGQGNRMPIKATRALLNAALDGSLNTVEFRKDETFGFLVPVSVPGVDAKI LDPRSTWADPAAYDKQAAKLAEEFVENFKKFEAYVDEAVKASAPKPKVTA
Sequences:
>Translated_530_residues MSDTVAILAELGVQTKSIKKNWNEARLYETAVASGEARVAKGGALVVETGQHTGRSAKDKFTVRDATTEKTVWWDNNASM TPEQFDALWTDFKAHLAKQDMYSQDLFGGADLDYRLPVTVVTEFAWHSLFIRHLLRLPTTDELSGFKTEFTIINCPSFRA DPAKHGCRSETVIAVNFAKRLVLIGGTSYAGETKKSVFTILNYLLPNQGVMPMHCSVNTSDKDDAAIFFGLSGTGKTTLS ADASRTLIGDDEHGWSENGLFNFEGGCYAKMIKLSAEAEPEIFATTKQWGTVLENVVMDATTRELDLDSAALAENSRGAY PIEAIPNASLTGRCGQPKNLIMLTADAYGIMPPIAKLTPAQAMYHFLSGYTARVAGTEKGVTEPSATFSTCFGGPFMPRH PSEYGNLLRELIARYNVDCWLVSTGWTGGPYGQGNRMPIKATRALLNAALDGSLNTVEFRKDETFGFLVPVSVPGVDAKI LDPRSTWADPAAYDKQAAKLAEEFVENFKKFEAYVDEAVKASAPKPKVTA >Mature_529_residues SDTVAILAELGVQTKSIKKNWNEARLYETAVASGEARVAKGGALVVETGQHTGRSAKDKFTVRDATTEKTVWWDNNASMT PEQFDALWTDFKAHLAKQDMYSQDLFGGADLDYRLPVTVVTEFAWHSLFIRHLLRLPTTDELSGFKTEFTIINCPSFRAD PAKHGCRSETVIAVNFAKRLVLIGGTSYAGETKKSVFTILNYLLPNQGVMPMHCSVNTSDKDDAAIFFGLSGTGKTTLSA DASRTLIGDDEHGWSENGLFNFEGGCYAKMIKLSAEAEPEIFATTKQWGTVLENVVMDATTRELDLDSAALAENSRGAYP IEAIPNASLTGRCGQPKNLIMLTADAYGIMPPIAKLTPAQAMYHFLSGYTARVAGTEKGVTEPSATFSTCFGGPFMPRHP SEYGNLLRELIARYNVDCWLVSTGWTGGPYGQGNRMPIKATRALLNAALDGSLNTVEFRKDETFGFLVPVSVPGVDAKIL DPRSTWADPAAYDKQAAKLAEEFVENFKKFEAYVDEAVKASAPKPKVTA
Specific function: Rate-limiting gluconeogenic enzyme. [C]
COG id: COG1866
COG function: function code C; Phosphoenolpyruvate carboxykinase (ATP)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoenolpyruvate carboxykinase [ATP] family [H]
Homologues:
Organism=Escherichia coli, GI1789807, Length=500, Percent_Identity=45.2, Blast_Score=439, Evalue=1e-124, Organism=Saccharomyces cerevisiae, GI6322950, Length=523, Percent_Identity=42.82982791587, Blast_Score=423, Evalue=1e-119,
Paralogues:
None
Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001272 - InterPro: IPR013035 - InterPro: IPR008210 [H]
Pfam domain/function: PF01293 PEPCK_ATP [H]
EC number: =4.1.1.49 [H]
Molecular weight: Translated: 57806; Mature: 57675
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTVAILAELGVQTKSIKKNWNEARLYETAVASGEARVAKGGALVVETGQHTGRSAKDK CCCHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCEEECCCEEEEECCCCCCCCCCCC FTVRDATTEKTVWWDNNASMTPEQFDALWTDFKAHLAKQDMYSQDLFGGADLDYRLPVTV EEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHH VTEFAWHSLFIRHLLRLPTTDELSGFKTEFTIINCPSFRADPAKHGCRSETVIAVNFAKR HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHCCCCCCCEEEEEECCE LVLIGGTSYAGETKKSVFTILNYLLPNQGVMPMHCSVNTSDKDDAAIFFGLSGTGKTTLS EEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEE ADASRTLIGDDEHGWSENGLFNFEGGCYAKMIKLSAEAEPEIFATTKQWGTVLENVVMDA CCCCCEEECCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHCC TTRELDLDSAALAENSRGAYPIEAIPNASLTGRCGQPKNLIMLTADAYGIMPPIAKLTPA CCCCCCCCHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCHH QAMYHFLSGYTARVAGTEKGVTEPSATFSTCFGGPFMPRHPSEYGNLLRELIARYNVDCW HHHHHHHCCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEE LVSTGWTGGPYGQGNRMPIKATRALLNAALDGSLNTVEFRKDETFGFLVPVSVPGVDAKI EEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEECCCCCEEE LDPRSTWADPAAYDKQAAKLAEEFVENFKKFEAYVDEAVKASAPKPKVTA ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure SDTVAILAELGVQTKSIKKNWNEARLYETAVASGEARVAKGGALVVETGQHTGRSAKDK CCHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCEEECCCEEEEECCCCCCCCCCCC FTVRDATTEKTVWWDNNASMTPEQFDALWTDFKAHLAKQDMYSQDLFGGADLDYRLPVTV EEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHH VTEFAWHSLFIRHLLRLPTTDELSGFKTEFTIINCPSFRADPAKHGCRSETVIAVNFAKR HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHCCCCCCCEEEEEECCE LVLIGGTSYAGETKKSVFTILNYLLPNQGVMPMHCSVNTSDKDDAAIFFGLSGTGKTTLS EEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEE ADASRTLIGDDEHGWSENGLFNFEGGCYAKMIKLSAEAEPEIFATTKQWGTVLENVVMDA CCCCCEEECCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHCC TTRELDLDSAALAENSRGAYPIEAIPNASLTGRCGQPKNLIMLTADAYGIMPPIAKLTPA CCCCCCCCHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCHH QAMYHFLSGYTARVAGTEKGVTEPSATFSTCFGGPFMPRHPSEYGNLLRELIARYNVDCW HHHHHHHCCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEE LVSTGWTGGPYGQGNRMPIKATRALLNAALDGSLNTVEFRKDETFGFLVPVSVPGVDAKI EEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEECCCCCEEE LDPRSTWADPAAYDKQAAKLAEEFVENFKKFEAYVDEAVKASAPKPKVTA ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA