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The map label for this gene is ycdC [C]

Identifier: 114797519

GI number: 114797519

Start: 2506767

End: 2507420

Strand: Reverse

Name: ycdC [C]

Synonym: HNE_2401

Alternate gene names: 114797519

Gene position: 2507420-2506767 (Counterclockwise)

Preceding gene: 114799138

Following gene: 114797146

Centisome position: 67.68

GC content: 57.03

Gene sequence:

>654_bases
ATGTCAAACGTGGACACACCGGAGAAGGCCGAGTTGGTGGATGCCGTAGCGGAACGCTCAGGCCGTGAGATGCTGCTGGA
AGCAGCAGGCGAGCTGATGTCCGAGCTCGGCACGATTGACGTTTCCCTGCACCAGATCGCCAAGCGCGCGGGCGTAACGG
CGCCGCTTGTGAAGTATCATTTCGGCTCGAAAGACGGCCTGCTGCTGGCGCTTGCCCAGCGCGATACGGCCCAATCGATT
AAGCAGCTGACCGAGTTGATGGAGATGGACATCGACCCGGCCACCAAGCTGCGCATTCACATCCAGGGCATCATCCGCAC
CTATTCACGCTATCCTTATCTCAACCGGCTGCTCGAGAATTTCCTGAAGGAAACGGATGCTGAAAAAGATGGCACTCAGT
CGATCTGGTCGAGCTTCATGCAGCCGCTGATCAATGCGCAGAAGCAGATCATTTCAGACGGTATTGCCGCCGGTCAGTTC
CGGAAGGTCGACTCCAAATATGCCTATTTCCTGATCAATGGCGCGTGCCAGTACATTTTCTCAACACGCATTACGGTGCG
CGAGCTGGTGGGCGAAACCAAAGTCGGCCAGGAACTCGCTCGGGAATACGCCGCCTTTGCAGCCGAAACCGTGCTGCGTG
GCATTGCCAAATAG

Upstream 100 bases:

>100_bases
GTGCCGGCGTGACCAACCGGATACGCCGCAGCGGCGGGCTACCCGTGCTTGCACCTGATGCCCTTTTCGGCCATCAAGTC
CCGCTGAATGAGGGGGTGAT

Downstream 100 bases:

>100_bases
CCCAGCTCCCGGCGCGGCCTCTCATCTGAAAGTTGTGTAACTCTCTGATCCAGTCGCGCGCCTGCGCCGTAGAGCTTTCC
AAATCTGGAGGCTCTATTGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MSNVDTPEKAELVDAVAERSGREMLLEAAGELMSELGTIDVSLHQIAKRAGVTAPLVKYHFGSKDGLLLALAQRDTAQSI
KQLTELMEMDIDPATKLRIHIQGIIRTYSRYPYLNRLLENFLKETDAEKDGTQSIWSSFMQPLINAQKQIISDGIAAGQF
RKVDSKYAYFLINGACQYIFSTRITVRELVGETKVGQELAREYAAFAAETVLRGIAK

Sequences:

>Translated_217_residues
MSNVDTPEKAELVDAVAERSGREMLLEAAGELMSELGTIDVSLHQIAKRAGVTAPLVKYHFGSKDGLLLALAQRDTAQSI
KQLTELMEMDIDPATKLRIHIQGIIRTYSRYPYLNRLLENFLKETDAEKDGTQSIWSSFMQPLINAQKQIISDGIAAGQF
RKVDSKYAYFLINGACQYIFSTRITVRELVGETKVGQELAREYAAFAAETVLRGIAK
>Mature_216_residues
SNVDTPEKAELVDAVAERSGREMLLEAAGELMSELGTIDVSLHQIAKRAGVTAPLVKYHFGSKDGLLLALAQRDTAQSIK
QLTELMEMDIDPATKLRIHIQGIIRTYSRYPYLNRLLENFLKETDAEKDGTQSIWSSFMQPLINAQKQIISDGIAAGQFR
KVDSKYAYFLINGACQYIFSTRITVRELVGETKVGQELAREYAAFAAETVLRGIAK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24161; Mature: 24030

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVDTPEKAELVDAVAERSGREMLLEAAGELMSELGTIDVSLHQIAKRAGVTAPLVKYH
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHH
FGSKDGLLLALAQRDTAQSIKQLTELMEMDIDPATKLRIHIQGIIRTYSRYPYLNRLLEN
CCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH
FLKETDAEKDGTQSIWSSFMQPLINAQKQIISDGIAAGQFRKVDSKYAYFLINGACQYIF
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHH
STRITVRELVGETKVGQELAREYAAFAAETVLRGIAK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNVDTPEKAELVDAVAERSGREMLLEAAGELMSELGTIDVSLHQIAKRAGVTAPLVKYH
CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHH
FGSKDGLLLALAQRDTAQSIKQLTELMEMDIDPATKLRIHIQGIIRTYSRYPYLNRLLEN
CCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH
FLKETDAEKDGTQSIWSSFMQPLINAQKQIISDGIAAGQFRKVDSKYAYFLINGACQYIF
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHH
STRITVRELVGETKVGQELAREYAAFAAETVLRGIAK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA