| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is irgA [H]
Identifier: 114797374
GI number: 114797374
Start: 2822511
End: 2825147
Strand: Reverse
Name: irgA [H]
Synonym: HNE_2662
Alternate gene names: 114797374
Gene position: 2825147-2822511 (Counterclockwise)
Preceding gene: 114798692
Following gene: 114798813
Centisome position: 76.25
GC content: 62.0
Gene sequence:
>2637_bases ATGGCGAAACTGCCCAGCAAACTCCCAGGAAGGAAATTCCAAGTGTCCAATACGAACCCGGCATCCGCAGGCCACACGGC CCTGCGCGCGATGCTCTGCCTTGGCGTTGGCCTCACAGCTCTTTCGGCTGTCGCCGCGCCCGCCCTCGCCCAGGAAAGCG AGACTGAAGATACCCGCACCATGCAGACCGTGACCATCACGGCGACCAAGCGCGAACAGACGCTGCAGGATGTGCCGATT GCCGTTTCGGTGGTTGATGAAGCGACCATCGAGCGGGCCGCGATTGTTGACCTCAACGATTTGCAGTCGATCATTCCGTC GCTGCGCGTGGGCCAGCTGCAATCTTCGGCCAACACCAACTTCGTCATCCGGGGCTTTGGCAACGGCGCGAACAATGCGG GTATCGAGCCGTCGGTCGGCGTCTTTATTGACGGCGTTTACCGCTCGCGTTCGGCGGCGCAGATTTCCGACCTTCCGAAT ATCGAGCGGGTTGAGGTGCTGCGCGGGCCGCAATCGACGCTGTTTGGCAAGAACGCATCTGCGGGCGTGATCTCGGTTGT TACCAAGAAGCCGCAATACGAGCTGGGCGGCGTGGTCGACGCGACGCTGAGCAATGAGAATGGCTACAGGGCGAACGGTT ATGTCACCGGGCCGCTGGCGGAGAACCTCGCGGGCGCTGTGGGCGTGACCTACAACAAGCGCGACGGCTATGTGGACGAT ATCGGCACAGGCACGGAGACCAACGAGCGTAATCGCTGGGGCATCCGCGGCGACCTGATTTTTGAACCCAATGTCAACAC GACGTTCCGCCTGCTGGGCGACTATGACAATATCGACGAGCTGTGCTGTGCGGCCGGCAATGTCATCAATGGGCCGACGG GCGGCATCATTCAGGCCATCGGCGGGACGCTTGTTCCGGAAGATCCCTACAGCTACCGCGTGGCGTATAACCTTCCGTCC ACGAACAAGGTGGATAATGGCGGGGTTTCGCTGCAGGGCGACTTTGACTTCTCCGGCATGCGCCTGACCTCGATCACGGC TTACCGGATTTCGAATCTGGAAACCAATCAGGACTCCGACTTTACCGGCGCCAACCTGCTGGGTGAGAACTCCAACAAGA CCGACATCGACACCTTTACCCAGGAAATCCGCCTGACCTCCACCGATGGCGACCGCCTCGACTGGATGGTGGGCGGCTTC TATTTCGATGAGACGGTCGAGATCGAGAACGCGCTGCTGTTTGGCGATGATTACCGCAACTATGCCAACGCGCTGGCAGG CGGGCTCAACCCCGCAACCGGCACGATCACCGACATTCTGGCGGGGCTGGAAAGCGCGCTGGGCCTGCCGGTGGGCACGA CCTTCGCTCAGGAAGGCCAGGGCTTCCGCGATGATGCCGGGCAGGACAACACCGCCTGGTCTCTTTTCGGGACGGTGGAT TACCGCCTGACTGACCGTCTGACGGCGACGGTTGGCCTGAACTACACCGAGGACAAGAAGGACGCTTACAACAACATCGC GGCCAGCGATGTGCTGTCGTCGCTGGACCTGGTGGCCATCGGCTTTGCCCAGGCGCTGGGCGGCGTGGGTGTGGACGCAA CAGACCCGGCGCAGGTCGGCGCGTTTGCGGCGGCGTTCCCGACGGAGTTCGCAGCCATCCAGGCGGCGGTTCAGGACCCT GCCTCCAATCCGCTGCTGGCGCTGCAGCCCTTGCAGTTCCTGCCGCCGTTCCTGGGCTTCCCGAACGTCGTCGAAGACGG CCGCACCAAGGACTCTTCGACGACGTACACGCTGCGTCTGGCCTATGACGTGAACGACAACCTCAATACCTATGTCTCGT ACGCTACGGGCTTCAAGGCGACCTCGTGGAACCTGTCGCGCGACTCGCGGCCATTTGCGCGGGACTTCATCTCCGGTTCG CCGGTGACGAACCCGCCGTCCTCGCCGATTCGCGATGCGGGCCTTGCCCTGCCAAACCTGACGAGCGGCACACGCTATGC CGGCCCGGAAGATTCGGCGGTGTTTGAGGTCGGCCTGAAGGGCGTCTATTCGACCGTGGCCTTTAACCTGGCCTATTTCG ACCAGACGATCGAAGGCTTCCAGTCGAACGTCTTCACCGGAACGGGCTTTGCGCTGGCCAACGCCGGCAAGCAGTCCAAC AAGGGTGTGGAATTCGACGTGTCCTGGAACCCGATCAACGACCTGCAACTGGTTGTTGCCGGTTCGGTTCAGGACCCGGT GTATGACGAGTTCCCCAACTCTGCGAGCGGTGACCTGTCTGGCCAGACGCCTGCGGGCATTCCGGAAGTCGCCACATCGA CAGCGGCGACCTACTTCTTTGATGTCGGCAGCTGGGACGCCTATGTCCGCGGCGACTGGCAATATGAGAGCCCGGTCGAC CATTTCGACAGCGCGGCCGATCAGGCCCTCATCGGCGAGCAGAAGGAAGTCAGCACGTTCAACGCCTCTTCCGGCTTCAC CAATGAGAACGGCCTGGGCGTGACGCTGTGGATCCGGAACATCTTCAATGACGAGTACATCACCACGGCTTTCCCGGCTG TGGCGCAGGCTGGCTCGATCATGGGGTATCCCAGCGCGCCGCGCAGCTATGGCGTGACGGTCCGCAAGACGTTCTGA
Upstream 100 bases:
>100_bases TGCCTGAGCGAGACGCTTGCCTAGCCGCGAATCGCCTGATTACAATCACGTCATAATAAAAAGAAACGGAGCCAGACCTT GCCCTTCACCGAGGGCAGCG
Downstream 100 bases:
>100_bases TCCGTCTGTCGCACATATATATATATGGAAAGCCCCGCCGCACTGGCGGGGCTTTTTTTGTGGCTCAGCGCGGCGGGCTG GCCCGGAGGGAGAGAATCGC
Product: outer membrane receptor (OMR) family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 878; Mature: 877
Protein sequence:
>878_residues MAKLPSKLPGRKFQVSNTNPASAGHTALRAMLCLGVGLTALSAVAAPALAQESETEDTRTMQTVTITATKREQTLQDVPI AVSVVDEATIERAAIVDLNDLQSIIPSLRVGQLQSSANTNFVIRGFGNGANNAGIEPSVGVFIDGVYRSRSAAQISDLPN IERVEVLRGPQSTLFGKNASAGVISVVTKKPQYELGGVVDATLSNENGYRANGYVTGPLAENLAGAVGVTYNKRDGYVDD IGTGTETNERNRWGIRGDLIFEPNVNTTFRLLGDYDNIDELCCAAGNVINGPTGGIIQAIGGTLVPEDPYSYRVAYNLPS TNKVDNGGVSLQGDFDFSGMRLTSITAYRISNLETNQDSDFTGANLLGENSNKTDIDTFTQEIRLTSTDGDRLDWMVGGF YFDETVEIENALLFGDDYRNYANALAGGLNPATGTITDILAGLESALGLPVGTTFAQEGQGFRDDAGQDNTAWSLFGTVD YRLTDRLTATVGLNYTEDKKDAYNNIAASDVLSSLDLVAIGFAQALGGVGVDATDPAQVGAFAAAFPTEFAAIQAAVQDP ASNPLLALQPLQFLPPFLGFPNVVEDGRTKDSSTTYTLRLAYDVNDNLNTYVSYATGFKATSWNLSRDSRPFARDFISGS PVTNPPSSPIRDAGLALPNLTSGTRYAGPEDSAVFEVGLKGVYSTVAFNLAYFDQTIEGFQSNVFTGTGFALANAGKQSN KGVEFDVSWNPINDLQLVVAGSVQDPVYDEFPNSASGDLSGQTPAGIPEVATSTAATYFFDVGSWDAYVRGDWQYESPVD HFDSAADQALIGEQKEVSTFNASSGFTNENGLGVTLWIRNIFNDEYITTAFPAVAQAGSIMGYPSAPRSYGVTVRKTF
Sequences:
>Translated_878_residues MAKLPSKLPGRKFQVSNTNPASAGHTALRAMLCLGVGLTALSAVAAPALAQESETEDTRTMQTVTITATKREQTLQDVPI AVSVVDEATIERAAIVDLNDLQSIIPSLRVGQLQSSANTNFVIRGFGNGANNAGIEPSVGVFIDGVYRSRSAAQISDLPN IERVEVLRGPQSTLFGKNASAGVISVVTKKPQYELGGVVDATLSNENGYRANGYVTGPLAENLAGAVGVTYNKRDGYVDD IGTGTETNERNRWGIRGDLIFEPNVNTTFRLLGDYDNIDELCCAAGNVINGPTGGIIQAIGGTLVPEDPYSYRVAYNLPS TNKVDNGGVSLQGDFDFSGMRLTSITAYRISNLETNQDSDFTGANLLGENSNKTDIDTFTQEIRLTSTDGDRLDWMVGGF YFDETVEIENALLFGDDYRNYANALAGGLNPATGTITDILAGLESALGLPVGTTFAQEGQGFRDDAGQDNTAWSLFGTVD YRLTDRLTATVGLNYTEDKKDAYNNIAASDVLSSLDLVAIGFAQALGGVGVDATDPAQVGAFAAAFPTEFAAIQAAVQDP ASNPLLALQPLQFLPPFLGFPNVVEDGRTKDSSTTYTLRLAYDVNDNLNTYVSYATGFKATSWNLSRDSRPFARDFISGS PVTNPPSSPIRDAGLALPNLTSGTRYAGPEDSAVFEVGLKGVYSTVAFNLAYFDQTIEGFQSNVFTGTGFALANAGKQSN KGVEFDVSWNPINDLQLVVAGSVQDPVYDEFPNSASGDLSGQTPAGIPEVATSTAATYFFDVGSWDAYVRGDWQYESPVD HFDSAADQALIGEQKEVSTFNASSGFTNENGLGVTLWIRNIFNDEYITTAFPAVAQAGSIMGYPSAPRSYGVTVRKTF >Mature_877_residues AKLPSKLPGRKFQVSNTNPASAGHTALRAMLCLGVGLTALSAVAAPALAQESETEDTRTMQTVTITATKREQTLQDVPIA VSVVDEATIERAAIVDLNDLQSIIPSLRVGQLQSSANTNFVIRGFGNGANNAGIEPSVGVFIDGVYRSRSAAQISDLPNI ERVEVLRGPQSTLFGKNASAGVISVVTKKPQYELGGVVDATLSNENGYRANGYVTGPLAENLAGAVGVTYNKRDGYVDDI GTGTETNERNRWGIRGDLIFEPNVNTTFRLLGDYDNIDELCCAAGNVINGPTGGIIQAIGGTLVPEDPYSYRVAYNLPST NKVDNGGVSLQGDFDFSGMRLTSITAYRISNLETNQDSDFTGANLLGENSNKTDIDTFTQEIRLTSTDGDRLDWMVGGFY FDETVEIENALLFGDDYRNYANALAGGLNPATGTITDILAGLESALGLPVGTTFAQEGQGFRDDAGQDNTAWSLFGTVDY RLTDRLTATVGLNYTEDKKDAYNNIAASDVLSSLDLVAIGFAQALGGVGVDATDPAQVGAFAAAFPTEFAAIQAAVQDPA SNPLLALQPLQFLPPFLGFPNVVEDGRTKDSSTTYTLRLAYDVNDNLNTYVSYATGFKATSWNLSRDSRPFARDFISGSP VTNPPSSPIRDAGLALPNLTSGTRYAGPEDSAVFEVGLKGVYSTVAFNLAYFDQTIEGFQSNVFTGTGFALANAGKQSNK GVEFDVSWNPINDLQLVVAGSVQDPVYDEFPNSASGDLSGQTPAGIPEVATSTAATYFFDVGSWDAYVRGDWQYESPVDH FDSAADQALIGEQKEVSTFNASSGFTNENGLGVTLWIRNIFNDEYITTAFPAVAQAGSIMGYPSAPRSYGVTVRKTF
Specific function: Involved in the initial step of iron uptake by binding ferric vibriobactin, an iron chelatin siderophore that allows V.cholerae to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=214, Percent_Identity=28.5046728971963, Blast_Score=77, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 93436; Mature: 93305
Theoretical pI: Translated: 4.10; Mature: 4.10
Prosite motif: PS00146 BETA_LACTAMASE_A
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKLPSKLPGRKFQVSNTNPASAGHTALRAMLCLGVGLTALSAVAAPALAQESETEDTRT CCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE MQTVTITATKREQTLQDVPIAVSVVDEATIERAAIVDLNDLQSIIPSLRVGQLQSSANTN EEEEEEEECCHHHHHHCCCEEEEEECHHHHCCEEEEEHHHHHHHHCCCCHHHHHCCCCCC FVIRGFGNGANNAGIEPSVGVFIDGVYRSRSAAQISDLPNIERVEVLRGPQSTLFGKNAS EEEEECCCCCCCCCCCCCCCEEEECHHCCCCCHHHHCCCCCCHHHEECCCCHHHCCCCCC AGVISVVTKKPQYELGGVVDATLSNENGYRANGYVTGPLAENLAGAVGVTYNKRDGYVDD CCEEEEEECCCCCCCCCEEEEEECCCCCEEECCEEECCHHHHCCCCEEEEECCCCCCCCC IGTGTETNERNRWGIRGDLIFEPNVNTTFRLLGDYDNIDELCCAAGNVINGPTGGIIQAI CCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHH GGTLVPEDPYSYRVAYNLPSTNKVDNGGVSLQGDFDFSGMRLTSITAYRISNLETNQDSD CCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEECCCCCCCCCC FTGANLLGENSNKTDIDTFTQEIRLTSTDGDRLDWMVGGFYFDETVEIENALLFGDDYRN CCCCEEECCCCCCCHHHHHHEEEEEECCCCCEEEEEEEEEEECCEEEECEEEEECCHHHH YANALAGGLNPATGTITDILAGLESALGLPVGTTFAQEGQGFRDDAGQDNTAWSLFGTVD HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCEEEEEEEEE YRLTDRLTATVGLNYTEDKKDAYNNIAASDVLSSLDLVAIGFAQALGGVGVDATDPAQVG EEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH AFAAAFPTEFAAIQAAVQDPASNPLLALQPLQFLPPFLGFPNVVEDGRTKDSSTTYTLRL HHHHHCCHHHHHHHHHHHCCCCCCEEEECCHHHCCHHCCCCCHHCCCCCCCCCEEEEEEE AYDVNDNLNTYVSYATGFKATSWNLSRDSRPFARDFISGSPVTNPPSSPIRDAGLALPNL EEECCCCCCEEEEEECCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCHHHCCCCCCC TSGTRYAGPEDSAVFEVGLKGVYSTVAFNLAYFDQTIEGFQSNVFTGTGFALANAGKQSN CCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC KGVEFDVSWNPINDLQLVVAGSVQDPVYDEFPNSASGDLSGQTPAGIPEVATSTAATYFF CCEEEEEECCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE DVGSWDAYVRGDWQYESPVDHFDSAADQALIGEQKEVSTFNASSGFTNENGLGVTLWIRN ECCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCHHCCEEECCCCCCCCCCCEEEEEEEH IFNDEYITTAFPAVAQAGSIMGYPSAPRSYGVTVRKTF HCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC >Mature Secondary Structure AKLPSKLPGRKFQVSNTNPASAGHTALRAMLCLGVGLTALSAVAAPALAQESETEDTRT CCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE MQTVTITATKREQTLQDVPIAVSVVDEATIERAAIVDLNDLQSIIPSLRVGQLQSSANTN EEEEEEEECCHHHHHHCCCEEEEEECHHHHCCEEEEEHHHHHHHHCCCCHHHHHCCCCCC FVIRGFGNGANNAGIEPSVGVFIDGVYRSRSAAQISDLPNIERVEVLRGPQSTLFGKNAS EEEEECCCCCCCCCCCCCCCEEEECHHCCCCCHHHHCCCCCCHHHEECCCCHHHCCCCCC AGVISVVTKKPQYELGGVVDATLSNENGYRANGYVTGPLAENLAGAVGVTYNKRDGYVDD CCEEEEEECCCCCCCCCEEEEEECCCCCEEECCEEECCHHHHCCCCEEEEECCCCCCCCC IGTGTETNERNRWGIRGDLIFEPNVNTTFRLLGDYDNIDELCCAAGNVINGPTGGIIQAI CCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHH GGTLVPEDPYSYRVAYNLPSTNKVDNGGVSLQGDFDFSGMRLTSITAYRISNLETNQDSD CCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEECCCCCCCCCC FTGANLLGENSNKTDIDTFTQEIRLTSTDGDRLDWMVGGFYFDETVEIENALLFGDDYRN CCCCEEECCCCCCCHHHHHHEEEEEECCCCCEEEEEEEEEEECCEEEECEEEEECCHHHH YANALAGGLNPATGTITDILAGLESALGLPVGTTFAQEGQGFRDDAGQDNTAWSLFGTVD HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCEEEEEEEEE YRLTDRLTATVGLNYTEDKKDAYNNIAASDVLSSLDLVAIGFAQALGGVGVDATDPAQVG EEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH AFAAAFPTEFAAIQAAVQDPASNPLLALQPLQFLPPFLGFPNVVEDGRTKDSSTTYTLRL HHHHHCCHHHHHHHHHHHCCCCCCEEEECCHHHCCHHCCCCCHHCCCCCCCCCEEEEEEE AYDVNDNLNTYVSYATGFKATSWNLSRDSRPFARDFISGSPVTNPPSSPIRDAGLALPNL EEECCCCCCEEEEEECCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCHHHCCCCCCC TSGTRYAGPEDSAVFEVGLKGVYSTVAFNLAYFDQTIEGFQSNVFTGTGFALANAGKQSN CCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC KGVEFDVSWNPINDLQLVVAGSVQDPVYDEFPNSASGDLSGQTPAGIPEVATSTAATYFF CCEEEEEECCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE DVGSWDAYVRGDWQYESPVDHFDSAADQALIGEQKEVSTFNASSGFTNENGLGVTLWIRN ECCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCHHCCEEECCCCCCCCCCCEEEEEEEH IFNDEYITTAFPAVAQAGSIMGYPSAPRSYGVTVRKTF HCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1406279; 2174861 [H]