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The map label for this gene is gspD [H]

Identifier: 114797223

GI number: 114797223

Start: 1930785

End: 1932746

Strand: Direct

Name: gspD [H]

Synonym: HNE_1865

Alternate gene names: 114797223

Gene position: 1930785-1932746 (Clockwise)

Preceding gene: 114800404

Following gene: 114798020

Centisome position: 52.11

GC content: 60.19

Gene sequence:

>1962_bases
ATGACCAAGCGTATATTGTTCGCGGCGGTTGCCGCGCTCTCTGCCTCCCAGTTCGCGACAGCTCAGGCGCCCGCCCCTTC
ACAGGACAAGCACGTCCTGAACCTTGAAGATGTCGAGTTGAACACGCTCATCGAAGATATTTCGATGCTCACCGGCTACA
CGTTCATCACCCACCCGGATGTGCGCCGGGCGAAAGTGTCGGTCATTTCGCAAACGCCAATGACGACTACGGAACTTTTC
CAGGTTTTCCTGACGACATTGCGAATTCAAGGTTTCGCGGCCGTTCCCGCCGGCAAGGACACTTACCGTATTGTGCCCCG
CGCCATCGCGTCCACAGAAGCGCCCATGTCTGGCCCTGGCCCCAATGCATTCGTAACCGAAGTCATCAAGCTCGACCGCG
CCAATGCAATGGAAGCGGCACAGATGATCAAGCCGTTGCTGGACGCTCAGGGGCAGGTTGTCGCCAATGCGGGAACCAAC
ACGCTTGTCGTTGTCGACTATGCTTCAAATCTTGAGCGGGTCCGCCGCATCATTGAAACACTGGACCGCGATCAGACGGT
TACGGAAACTGTACCGCTCACCAACGTTCCGGCCGTGGAGATTGAAACCGTCCTTACACGGCTGCAGGGCGATCCCTCGG
CGCAACAGGGTCAAGCCCCGTCGCGCCTCTCGGCTGTTGCCTCCCTCACAAGCAACTCCATCATTCTCCGGGGCGACGCT
ACCTCCGTAGAGCGCGCAAAGCGCGTCGCGCTCGAACTGGACGCCACAAACCCTCAGCGGGATCACGTCCGGGTCATCAC
CCTGAACTATGCCGATGCAGAAGAAGTCGTGCCTATTCTGGAGCGCGTCGCAAACAGCATGGCGATGCAGCGCGCGCCTT
CTGAAACGGCGCCCGTTGCCCAGACGATTGCCCATCACGGCCCCACCAACTCCCTGATCATCAGCGCCAACCCGGAGACC
ATCCTCGCGATGGAACGTGTCGTGACCGCGCTCGATGTCCGCCGGCCCCAGGTTATGGTGGAAGCGATTATCGTCGAGAT
GTCGGATGACGCAGCCCGTGAATTGGGCCTGCAATTCCTTCTGGCCGGCACAGGGGGCGACGTTCCCTTTGCCTCCACCA
ACTTCTCCCGCGCGGCGCCAAACCTCCTCGCACTGACAGGCGCGCTGGTTACCGATGCATTCGAAGACCCAGCCGCAGAA
AACCCGTTTCGCGAAGCCGCCATCAGTTCACTGACCGGTTCTTCCGGCCTTACACTCGGCTTTGGCGGCACATCCGGCGA
CAATCTGTTCGGCGTCATTCTCAATGCAGTCGAAGACGATACCGCTTCACGCATCCTGTCCACGCCCTTTGGCATGACAC
TCAACAACGCAACATCCGCGCTGATTGTCGGCCAGGAGATTCCCGTAACAACGGGGCAGGTTCTGGGCGAGGCGAACTCG
AATCCTTTCCGCACAGTTGAGCGCAAAGACATCGGCATCCAGCTCGAAGTCACCCCACGCATTGGCGAGAACGATACCGT
TCGTCTTGACATTCGTCAGGAAGTTTCCAGCGTCTTCGGCAGCGTCGGAACCGTGACGCCGGATCTGATCCTCGACAAGC
GGGAGATCCGCGCCAGCGTTCTCGCCGATGATGGCGAGATCATTGTGCTCGGCGGCCTGGTTGAGCAGACAGATACGCTC
CGCGACACCAAGGTTCCGGTTCTGGGCGATATTCCGGGTGTCGGACGCCTCTTTCGCTCGGAGGGCAAGGCCGCGACGCG
CCGCAACCTGATGGTCTTCATTCGCCCCACCATCGTTCGCAACAAGGCAGATGCGCAGGCCGTCACTCAGCAGAAATACC
TCTACGTACAGGCTGAGGAGCTGATGCGGGAGCAATCCCCGGCCGGCTCCATTGACCAGTACATACGCGAAGTTCTGGGC
ACCGGCGGCCCGGCCACGCAACTGGTCCAGCCGCCGCAATAA

Upstream 100 bases:

>100_bases
TTCAGGCGGCCGTCATGTCTTCGGATGTCATTGCGCTTGATGTTGTTCGCCGGGGCGCGATCGTCCGCCTACGGCTCTCT
CCTGATTCCGGCCTTTCTCA

Downstream 100 bases:

>100_bases
TCCTCTCATGGCGCGCGCTCAGGTCACCTACTCATTTGCCCGCGACAAGGGGATTGTTGTTATCCCCGGCCGGTCGGATT
TGACGTTTGCCGTTCGCGAG

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 653; Mature: 652

Protein sequence:

>653_residues
MTKRILFAAVAALSASQFATAQAPAPSQDKHVLNLEDVELNTLIEDISMLTGYTFITHPDVRRAKVSVISQTPMTTTELF
QVFLTTLRIQGFAAVPAGKDTYRIVPRAIASTEAPMSGPGPNAFVTEVIKLDRANAMEAAQMIKPLLDAQGQVVANAGTN
TLVVVDYASNLERVRRIIETLDRDQTVTETVPLTNVPAVEIETVLTRLQGDPSAQQGQAPSRLSAVASLTSNSIILRGDA
TSVERAKRVALELDATNPQRDHVRVITLNYADAEEVVPILERVANSMAMQRAPSETAPVAQTIAHHGPTNSLIISANPET
ILAMERVVTALDVRRPQVMVEAIIVEMSDDAARELGLQFLLAGTGGDVPFASTNFSRAAPNLLALTGALVTDAFEDPAAE
NPFREAAISSLTGSSGLTLGFGGTSGDNLFGVILNAVEDDTASRILSTPFGMTLNNATSALIVGQEIPVTTGQVLGEANS
NPFRTVERKDIGIQLEVTPRIGENDTVRLDIRQEVSSVFGSVGTVTPDLILDKREIRASVLADDGEIIVLGGLVEQTDTL
RDTKVPVLGDIPGVGRLFRSEGKAATRRNLMVFIRPTIVRNKADAQAVTQQKYLYVQAEELMREQSPAGSIDQYIREVLG
TGGPATQLVQPPQ

Sequences:

>Translated_653_residues
MTKRILFAAVAALSASQFATAQAPAPSQDKHVLNLEDVELNTLIEDISMLTGYTFITHPDVRRAKVSVISQTPMTTTELF
QVFLTTLRIQGFAAVPAGKDTYRIVPRAIASTEAPMSGPGPNAFVTEVIKLDRANAMEAAQMIKPLLDAQGQVVANAGTN
TLVVVDYASNLERVRRIIETLDRDQTVTETVPLTNVPAVEIETVLTRLQGDPSAQQGQAPSRLSAVASLTSNSIILRGDA
TSVERAKRVALELDATNPQRDHVRVITLNYADAEEVVPILERVANSMAMQRAPSETAPVAQTIAHHGPTNSLIISANPET
ILAMERVVTALDVRRPQVMVEAIIVEMSDDAARELGLQFLLAGTGGDVPFASTNFSRAAPNLLALTGALVTDAFEDPAAE
NPFREAAISSLTGSSGLTLGFGGTSGDNLFGVILNAVEDDTASRILSTPFGMTLNNATSALIVGQEIPVTTGQVLGEANS
NPFRTVERKDIGIQLEVTPRIGENDTVRLDIRQEVSSVFGSVGTVTPDLILDKREIRASVLADDGEIIVLGGLVEQTDTL
RDTKVPVLGDIPGVGRLFRSEGKAATRRNLMVFIRPTIVRNKADAQAVTQQKYLYVQAEELMREQSPAGSIDQYIREVLG
TGGPATQLVQPPQ
>Mature_652_residues
TKRILFAAVAALSASQFATAQAPAPSQDKHVLNLEDVELNTLIEDISMLTGYTFITHPDVRRAKVSVISQTPMTTTELFQ
VFLTTLRIQGFAAVPAGKDTYRIVPRAIASTEAPMSGPGPNAFVTEVIKLDRANAMEAAQMIKPLLDAQGQVVANAGTNT
LVVVDYASNLERVRRIIETLDRDQTVTETVPLTNVPAVEIETVLTRLQGDPSAQQGQAPSRLSAVASLTSNSIILRGDAT
SVERAKRVALELDATNPQRDHVRVITLNYADAEEVVPILERVANSMAMQRAPSETAPVAQTIAHHGPTNSLIISANPETI
LAMERVVTALDVRRPQVMVEAIIVEMSDDAARELGLQFLLAGTGGDVPFASTNFSRAAPNLLALTGALVTDAFEDPAAEN
PFREAAISSLTGSSGLTLGFGGTSGDNLFGVILNAVEDDTASRILSTPFGMTLNNATSALIVGQEIPVTTGQVLGEANSN
PFRTVERKDIGIQLEVTPRIGENDTVRLDIRQEVSSVFGSVGTVTPDLILDKREIRASVLADDGEIIVLGGLVEQTDTLR
DTKVPVLGDIPGVGRLFRSEGKAATRRNLMVFIRPTIVRNKADAQAVTQQKYLYVQAEELMREQSPAGSIDQYIREVLGT
GGPATQLVQPPQ

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=611, Percent_Identity=31.4238952536825, Blast_Score=239, Evalue=5e-64,
Organism=Escherichia coli, GI1789793, Length=431, Percent_Identity=25.9860788863109, Blast_Score=98, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 69892; Mature: 69761

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKRILFAAVAALSASQFATAQAPAPSQDKHVLNLEDVELNTLIEDISMLTGYTFITHPD
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEECCC
VRRAKVSVISQTPMTTTELFQVFLTTLRIQGFAAVPAGKDTYRIVPRAIASTEAPMSGPG
HHHHHEEEEECCCCCHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHCCCCCCCCCC
PNAFVTEVIKLDRANAMEAAQMIKPLLDAQGQVVANAGTNTLVVVDYASNLERVRRIIET
CHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEEEECHHHHHHHHHHHHH
LDRDQTVTETVPLTNVPAVEIETVLTRLQGDPSAQQGQAPSRLSAVASLTSNSIILRGDA
HCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCC
TSVERAKRVALELDATNPQRDHVRVITLNYADAEEVVPILERVANSMAMQRAPSETAPVA
HHHHHHHEEEEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
QTIAHHGPTNSLIISANPETILAMERVVTALDVRRPQVMVEAIIVEMSDDAARELGLQFL
HHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHEEEHHEEECCCHHHHHCCEEEE
LAGTGGDVPFASTNFSRAAPNLLALTGALVTDAFEDPAAENPFREAAISSLTGSSGLTLG
EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEE
FGGTSGDNLFGVILNAVEDDTASRILSTPFGMTLNNATSALIVGQEIPVTTGQVLGEANS
ECCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCEECCCCEEEEECCCCCCCHHHHHCCCCC
NPFRTVERKDIGIQLEVTPRIGENDTVRLDIRQEVSSVFGSVGTVTPDLILDKREIRASV
CCCCEEECCCCCEEEEECCCCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHCCHHHHHHHE
LADDGEIIVLGGLVEQTDTLRDTKVPVLGDIPGVGRLFRSEGKAATRRNLMVFIRPTIVR
EECCCCEEEECCCHHHHHHHHCCCCCCEECCCCHHHHHHCCCCCHHHCCEEEEEECCEEC
NKADAQAVTQQKYLYVQAEELMREQSPAGSIDQYIREVLGTGGPATQLVQPPQ
CCHHHHHHHHHHEEEEEHHHHHHHCCCCCCHHHHHHHHHCCCCCHHCCCCCCC
>Mature Secondary Structure 
TKRILFAAVAALSASQFATAQAPAPSQDKHVLNLEDVELNTLIEDISMLTGYTFITHPD
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEECCC
VRRAKVSVISQTPMTTTELFQVFLTTLRIQGFAAVPAGKDTYRIVPRAIASTEAPMSGPG
HHHHHEEEEECCCCCHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHCCCCCCCCCC
PNAFVTEVIKLDRANAMEAAQMIKPLLDAQGQVVANAGTNTLVVVDYASNLERVRRIIET
CHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEEEECHHHHHHHHHHHHH
LDRDQTVTETVPLTNVPAVEIETVLTRLQGDPSAQQGQAPSRLSAVASLTSNSIILRGDA
HCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCC
TSVERAKRVALELDATNPQRDHVRVITLNYADAEEVVPILERVANSMAMQRAPSETAPVA
HHHHHHHEEEEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
QTIAHHGPTNSLIISANPETILAMERVVTALDVRRPQVMVEAIIVEMSDDAARELGLQFL
HHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHEEEHHEEECCCHHHHHCCEEEE
LAGTGGDVPFASTNFSRAAPNLLALTGALVTDAFEDPAAENPFREAAISSLTGSSGLTLG
EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEE
FGGTSGDNLFGVILNAVEDDTASRILSTPFGMTLNNATSALIVGQEIPVTTGQVLGEANS
ECCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCEECCCCEEEEECCCCCCCHHHHHCCCCC
NPFRTVERKDIGIQLEVTPRIGENDTVRLDIRQEVSSVFGSVGTVTPDLILDKREIRASV
CCCCEEECCCCCEEEEECCCCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHCCHHHHHHHE
LADDGEIIVLGGLVEQTDTLRDTKVPVLGDIPGVGRLFRSEGKAATRRNLMVFIRPTIVR
EECCCCEEEECCCHHHHHHHHCCCCCCEECCCCHHHHHHCCCCCHHHCCEEEEEECCEEC
NKADAQAVTQQKYLYVQAEELMREQSPAGSIDQYIREVLGTGGPATQLVQPPQ
CCHHHHHHHHHHEEEEEHHHHHHHCCCCCCHHHHHHHHHCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934833; 10984043 [H]