| Definition | Shewanella frigidimarina NCIMB 400, complete genome. |
|---|---|
| Accession | NC_008345 |
| Length | 4,845,257 |
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Identifier: 114565012
GI number:
Start: 4612190
End: 4615345
Strand: Reverse
Name: Not Available
Synonym: Sfri_3862
Alternate gene names: NA
Gene position: NA
Preceding gene: 114565013
Following gene: 114565011
Centisome position: NA
GC content: NA
Gene sequence:
>3156_bases ATGGCTCGCTTTTTTATTGATCGCCCTATTTTTGCGTGGGTGATTGCATTATTAATTATGCTTGCAGGTGTGTTAGCCAT TAAAGGCTTACCCATTGCGCAGTATCCAAGTATTGCCCCGCCAACCGTAGTGATCAGTGCTTTCTATCCTGGTGCTTCTG CCAAAACCATGGAAGACACAGTCACTCAGGTGATTGAGCAGCGCATGACTGGGCTTGATCACTTACGCTATATTTCATCG ACCAGTGACAGTTTTGGTAATGCCACTATCACCTTAACATTCAATGCTGAGGCTGATCCTGATATTGCTCAAGTGCAAGT TCAGAATAAGCTGCAAGCGGCTACGCCATTATTACCTTCTGAGGTTCAGCAGCAAGGTGTCAAAGTTAACAAATCTAGCT CTGGATTTTTAATGGTGCTTGGCTTTGTGTCTGCAGATGGTTCAATGGGCAAAAGCGATATATCTGATTATGTTGCTGCC AACGTTCAAGACCCAATGAGCCGTGTACCTGGCGTGGGTGAGATCACGTTATTTGGTGCGCAGTATGCAATGCGCATTTG GTTAGACCCGTTTAAGTTAACTCAATACAAATTAACCAGTATTGATATCGTTGCGGCAATACGTGAGCAAAATGCCCAAA TATCAGCAGGGCAATTAGGTGGTGCTCCGTCGGTTGCTGGTCAAGAACTTAACGCGACCGTATCAGCACAGAGCCGCTTG CAAACCCCAGAGCAATTTAAGCAAATTATTGTTAAATCTGACTCATCAGGTGCTAACGTTTATTTAGGCGATGTTGCTAG AGTTGAGTTAGGTGCAGAAAGCTACGCGGTTGACTCATATTACAATGGTAAGCCAGCGTCGGGCCTTGCATTCAAGCTGG CTACAGGCGCGAATGCGTTAGATACGGCAGAAGGCATTAAAGCCAAAGTTAATGAGATGAAAGAGTTTTTCCCTCAAGGA CTTGAAGTCGTTTATCCCTATGATACAACGCCATTCGTAGAGCAATCGATTGAAGGTGTTGTGCACACATTGATTGAAGC CATTGTATTGGTCTTCTTGATTATGTATCTGTTCCTTCAAAACTTCAGAGCAACGCTTATTCCTACCATTGCGGTACCAG TAGTATTGCTAGGTACGTTTGCGGTGCTATCCGCTGCAGGTTTCACCATCAACACTTTAACCATGTTTGCCATGGTATTG GCCATTGGTTTGCTGGTGGACGATGCAATTGTGGTGGTGGAAAACGTCGAACGCGTGATGTCGGAAGAAGGCTTAAGTCC GCTGGAAGCGACCCGTAAATCGATGGATCAAATTACCAGTGCCTTAGTGGGTATTGGTTTGACCCTGTCAGCTGTATTTG TACCAATGGCATTTATGTCTGGGTCGACTGGTGTTATTTATCGTCAGTTCTCGATCACCATTGTATCGGCGATGGCCTTG TCGGTGTTTGTGGCAATTGTACTTACGCCAGCATTATGCGCCACCATGCTAAAGCCAGTTAAAAAAGGTCATACTCACGC TGATACCGGTTTCTTCGGGTGGTTTAACCGCAAGTTTGATGCAATGACCTCTCGTTATGAATCAAGTGTGGGAAGTATTT TAAAGCGCTCATTCCGCGTCATGTTGATCTACGTTGGCTTGGTTATCGCAGTGGCTTGGATTTTCTTACGCATGCCAACC GCATTTTTACCCGACGAAGACCAAGGTATCTTGTTCACTCAAGCTATTTTGCCAACCAACTCAACCCAAGAAAGCACGGT TAAGGTATTAAAAGATGTATCCGACTATTACCTTACCGAAGAAAAAGACCTGGTAAATTCAGTGTTTACTGTTGCGGGCT TTAGTTTTGCGGGTTCTGGTCAAAACATGGGTATTGCGTTTGTGAGCCTAAAAGATTGGTCCACACGTGAAGCGCCTGGT GAAGATGTTAAGTCGTTAGCGGGTCGAGCCATGGGCCGTTTTATGCAAATTAAAGAAGCGTTAGTGTTTGCTTTTGTGCC GCCATCAGTGATTGAACTGGGTACCGCAAATGGTTTTGACGTCTACTTAAAAGACTTAAATGGTCAAGGACATGGCAAGT TAATTGAGGCGCGTAATCAATTATTAGGTATGGCTGCACAAAACCCTAACCTTGTTGGGGTGCGTCCAAATGGCCAAGAA GATGCGCCCATCTATAAAATTAATGTTAATCACGCCAAATTACGTGCATTAGACATTGATATTAATAGTGTGAACAGTGT CTTGGGTACCGCGTGGGGTGGGTCGTATGTGAATGACTTTATCGACCGTGGGCGAGTGAAAAAGGTTTATATCCAGGGTG AGGCTAAATATCGTATGCAACCTGGGGACTTAGACTCTTGGTATGTGCGCAACAATAATGGTGAAATGGTGCCATTTTCG GCATTCGCATCAGGTTCCTGGGAGTTTGGTTCTCCTCAGTTACAACGTTTTAACGGTGTGCCTGCGGTTAATATTCAGGG TGCTACCGCCCCGGGCTACAGTACCGGTGCTGCGATGGATGCACTTGAAGAAATGGCTGAGAAGCTTCCACCTGGCTATG GCTTAGAGTGGAATGGTTTGTCGTACGAAGAGCGTTTATCGGGTAACCAAGCGCCTAGCTTATATGCCTTATCTATTTTA ATCGTATTTTTAGTGTTAGCTGCATTGTATGAAAGCTGGTCGGTACCATTATCGGTCATTTTAGTTGTTCCACTCGGGAT TATTGGTGCCTTGCTGGCAATGAGTGCTCGTGGTCTGCCTAATGACGTATTTTTCCAAGTAGGCTTGCTAACCACGGTGG GCTTGGCGACTAAAAATGCCATTCTAATTGTCGAGTTTGCTAAGGAATACTACGAGAAAGGTTCTGGCTTAATTGAGGCA ACCTTGCATGCTGTTAGAGTACGTTTACGCCCAATTCTAATGACCTCTTTAGCATTTGGTCTAGGTGTTGTGCCATTAGC GATTAGCTCAGGAGTAGGCTCTGGTAGCCAAAATGCCATCGGTACTGCGGTATTGGGCGGTATGATGACCTCCACCTTCT TAGGTATCTTCTTTGTGCCGTTATTCTTTGTGGTGGTTGAACGCATTTTCAGTAAGCGTGAAAAACCCACTGAAGAGGAA AATGAAAAAGTTGATAATGATAGAAAAGATATTTAA
Upstream 100 bases:
>100_bases CGATAAATTAATTGTCGAAGGATTACAAAAAATCCGCCCTGGTGCACCAGTATCTGCACAGGTGTTAACGGCTGATCAAC CACAAAAGTAGGGAATAATT
Downstream 100 bases:
>100_bases TTTTTTACATTATTGATTGTTAAAAGCCCAGTTTTTCTGGGCTTTTTTGTGACTATTGTTTCTCTATTGATGCAGCTGCT AATAAATAGCGTTAATGGTG
Product: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>1051_residues MARFFIDRPIFAWVIALLIMLAGVLAIKGLPIAQYPSIAPPTVVISAFYPGASAKTMEDTVTQVIEQRMTGLDHLRYISS TSDSFGNATITLTFNAEADPDIAQVQVQNKLQAATPLLPSEVQQQGVKVNKSSSGFLMVLGFVSADGSMGKSDISDYVAA NVQDPMSRVPGVGEITLFGAQYAMRIWLDPFKLTQYKLTSIDIVAAIREQNAQISAGQLGGAPSVAGQELNATVSAQSRL QTPEQFKQIIVKSDSSGANVYLGDVARVELGAESYAVDSYYNGKPASGLAFKLATGANALDTAEGIKAKVNEMKEFFPQG LEVVYPYDTTPFVEQSIEGVVHTLIEAIVLVFLIMYLFLQNFRATLIPTIAVPVVLLGTFAVLSAAGFTINTLTMFAMVL AIGLLVDDAIVVVENVERVMSEEGLSPLEATRKSMDQITSALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMAL SVFVAIVLTPALCATMLKPVKKGHTHADTGFFGWFNRKFDAMTSRYESSVGSILKRSFRVMLIYVGLVIAVAWIFLRMPT AFLPDEDQGILFTQAILPTNSTQESTVKVLKDVSDYYLTEEKDLVNSVFTVAGFSFAGSGQNMGIAFVSLKDWSTREAPG EDVKSLAGRAMGRFMQIKEALVFAFVPPSVIELGTANGFDVYLKDLNGQGHGKLIEARNQLLGMAAQNPNLVGVRPNGQE DAPIYKINVNHAKLRALDIDINSVNSVLGTAWGGSYVNDFIDRGRVKKVYIQGEAKYRMQPGDLDSWYVRNNNGEMVPFS AFASGSWEFGSPQLQRFNGVPAVNIQGATAPGYSTGAAMDALEEMAEKLPPGYGLEWNGLSYEERLSGNQAPSLYALSIL IVFLVLAALYESWSVPLSVILVVPLGIIGALLAMSARGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEYYEKGSGLIEA TLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTAVLGGMMTSTFLGIFFVPLFFVVVERIFSKREKPTEEE NEKVDNDRKDI
Sequences:
NA
Specific function: NA
COG id: COG0841
COG function: function code V; Cation/multidrug efflux pump
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA