Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

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Identifier: 114563838

GI number:

Start: 3209135

End: 3213490

Strand: Direct

Name: Not Available

Synonym: Sfri_2672

Alternate gene names: NA

Gene position: NA

Preceding gene: 114563837

Following gene: 114563839

Centisome position: NA

GC content: NA

Gene sequence:

>4356_bases
ATGAACTTCTTTGCGGCATCAAAAGAGAATAAGTATAAATCTATGCCTAAAATTTTACTCTTTATCTGTGTTTATTTTAT
TTTTAGTTTTGGCGCTACGGCCATTGAAGCTGATGACACTGAATCAAATTTCGATCTACTACTAAACTACACTAATTATG
GTGTTGCTGATGGTCTATCTCAGGACACAGTAACGGCCATAGTAGAAGATCCAGAGGGTTACGTTTGGGTTGGTACTATC
AATGGATTAAATCGTTTCGACGGTAATGAATTCAAGCAATTCTATGCCGATGATAATGCAAAATCTCTACCCAGCTCTTT
TATTCGTAATTTACTTATCGATGACAATGGTGTTCTGCAAATCGGGACTGATAAAGGTCTCGTGCAATTTGATAAAGAAA
CAGAATCATTCTCCAGAAACAGTATCTCAGCTCAAATTGGTGAACAAGCCATTTGGTCAATATCAAAACAAGATGGTGAA
ATGTTTATTGGTTTGAATGGTAAATTTATATCTTATGGAAAAAATAATGACCAGAATTACATTTTTGAAGATATAAAATT
AAAAGAAATAAAAAATGTCATTAAATTAGATGATATTTTTTACATTAGAAATTATGAAGGTGATATTTTTAAAAAAAACA
TCACCACTCTTAAAAAAGTACTAAGTAAATCTAATGACATTATTTCTTTCCGCAACAACATAATTGCAGCAACAGATCAA
GGTTTGTTCGTTCTCAATGAAGAAATAAAAAAAATATCTGAATTAACACTAACTGATTTATCAACTAACTCTTCTAACAA
AAATAATATCATCGGACTATATGAAAACAAAATATTTAATATTGAAATTATCAACAGTCAAATAAAATGGACGTCTATCG
GTGAAATCCAAGTTGAAGGTGAAAAATTTATAAAATCATTCATATCCATCAATAAAGAAAACTTTTACATTTCTAACTAT
AATGATGGATTTATAAAAATATCACCCGAAAATAATTATGTTAAAAAAATAAAAGGCACCCCAGATAACATATGGTCAAC
ATCAAAATATAAAAACAATATATATTTAGTTAATGATGATAGTAATATATATATTTATGATGAAAATGTAATCTTAAAAA
ACATAATTAACACATCACTACCTCACGGACCCAAATCGATATTGTTGATCAATGAAATAGCATTTATAGGTACTAAATCT
GGTTTATATGTAATAAATATAGAAAATGGTATCGAAAGAAAAATAAATAATGATTTAATAGTTAGTATAAAATATAGTAA
AAGTGAAAATAAAATCTACAGCTCAAATTTTAAAGGTGAAATACAGGTACTGTCACCAACTGGTGAGATTACAGAGGAAA
TAAATACGAACTTCAGTTATCCGATCTATGACATGATTAAAATAGGCTCTAAGTTATGGATAGCATCTCAAGCAGGCTTA
CTTTTATGGGAAAATAATAATATAACAAAAGTTTTCCATGATGATATAGTCTTTAATATTGTCGTTAATAAAAACAAAAT
CTATTTTGGTACTCGAAGTGCTATTTACTCGATGGACAGTAATACAACCACCAAACCCAAAGTGATATTCAATAGAAAAA
AACTCATATATTCAATGGCTTTTATAGACAACATACTTGTTGCATCGTCAAATAGAGAAGTTTATATTATTGATACAGAA
ACAAGTATCGCTCACACTCTTAATATTGAAAATGGTGTTTTAAAAGACTATAACACTCAGTCATTATTAGTAATGAATAA
GTCTGTATTATTTGGCGGACCTGATGGACTGAGTCTAGTAGAACCTAAGAAAATATTAACTGCAATATCTAAAAACTCTC
CTGACAAAATAAAATTTACTGACTTCCTTTTATTTAATAGCCCCGTCGACATTGGTTCGAAAACCCTGAATAAACCTATA
AATAATCTAGACGAAATCACATTAAAACATTCAGACTATCCATTTACAATCAAATTTAATATTTTAGGAAAGAATAATAA
TGACTTTGAATTTTTTTATTACTTAGAAGACTTGGAAAAAAACTGGTTATCAACGAAAGGAAATAACAGTGTAACTTATA
CAAATTTATCAGCTGGAAAATATACTTTTAAATTATATTCTGAAAATAGGCTGTCAGGTAAAAAAACTGATGTTAAAAGT
ATAAAAATATTAGTTACACCTCCTTGGTGGTTATCTTTAGAAGCAAAGTTGGTATATGGACTATTTATATTATCCCTTAT
AATTTTATCTTTTAAAGTAATCATTCGTCGACGAGAAATCCAAAAACAAATAGCCCAAAGTGAAGAAAGATTAAAACTGT
CTTTATGGGGCAGTGGCGATGAAATGTGGGACTGGGATATTGAAAGTGGCAAAATCTACCGTTCTAATATCTGGGGCTCT
TTAGACTTCCCTCAAGACGGTCGTCGCTCGGGTAATCCTGATGAAGAAAGTAATATCCACCCTCTCGATAGAGATCGTGT
GACAAGGGCGCTAAATGATCATTTCAATGCCATTACCGATCACTTCGAAATAGCTTATCGCGTTAAAGCACGTAATCAAC
AGTGGGTTTGGATTTTAGACAGAGCCAAGATAGTTGAACGCGATCAAAAAGATGTCCCGCTTCGAATGACGGGCACCATT
AAAGACATCAATAATATTAAGCAAGCAGAAGAACAACTTCGTTTATTCGCTAGAGCAATTGAAAATATTTCTGAAGGGAT
GTTTATTCTCAATGAGAAATATCAGTTTGTTGAAGTCAATAATGCCTGTTGCGAACTAGCAGCTTCAACAAAAGAAAAAT
TTGCGAATGAAATACTCCATTTCAGTCGTTATCCCGCCAGTTATTCTGAACAAATAAGAAACTTGTTAAAGCAGCAAGGT
CGTTGGAGCGGCGAAATTGAAGCGAGTAAAGGTAAAGATAGCTATTTCTTAATGGAACTGACCATTGACGCTATATACAA
TGAACAAGGTGAAACCAGTCATTATGTTGGCGTATTTTCCGATATCACCCGTCGTAAGCAGCAAGAAGAAGAGCTCAGAA
AACTCACCAATAATGACTTACTTACTGGTTTACCCAATAGGTCTAGTTTGCAAGTGACACTGAGTAACTTGGTTAAAAAA
GATGTTCATCACACCCTAATGGTGCTTGATTTAGATAATTTCAAACGTATTAATGACTCATTAGGCCATCAAATTGGTGA
TGACTTATTAATTGGTGTTGCAGAACGTATTAAGTTAGCAATTCCAAAACATGCCAGCTTATACCGTCTAGGCGGTGATG
AATTCGCTTTACTCGTCGATCAACACCCAGACATAGGGTCATGTGCAGCCATTGCTACACAAGTAATAAATTGTCTAAAA
CCAGCTTTCACTCTTAATAATGACTCACTCGTACTCGGTATTAGTATCGGCATAGTGCTTTATCCTGAAGATGAACAAAA
CGAGCAAGCATTGTTACGCAAAGCGGATATTGCTATGTATCACGCTAAATCTGGTGGTGGTAACCGTTATCAGTTCTATT
CAGAGTCATTAAACCAAAATGCTTTACGTCAACTCGAAATAGAAAGCTTAATCAGAGAAGCACTCAAAGACGATTTGTTT
GAAGTTTATTATCAACCCAAAATCGACGTTAAGAAAGATCGTCTTAACGGAATGGAAGCATTAGTGAGATTAAATCATCC
TAAATTAGGCCTGATTGGACCGAATGAATTTATCCCCCTTGCCGAAGAAAATGGTTTGATCGTTGAAATTGGTGATGTCG
TCTTGCGAAAAGCGTGTTTTGCTGCGCAGAAATGGCTTGAGCTAGGATTGTTTAGTGGTCGTGTTGCTGTCAATTTATCG
TCAAGACAATTTGCTCTGCCCGATTTACAGCAACGAATAGAGTCAATTTTACGACTGACAAAATTACCGGCTAAACACTT
AGAGCTTGAAATCACTGAAGGGACTGTCATTAAAGATCCCGAACAAGCCATTAAAGTGATGCAACAATTGGCGAAAATGG
GCGTAAGCCTTGCTCTTGACGACTTTGGGACAGGTTATTCCTCTTTATCGTATCTAAAACGATTCCCCATTAATTGCTTA
AAAATTGATAAAACTTTCGTAGATGACATAGATAAATCTGACCGAGATCTGAAAATGGTCGATTCTATTATTACTATAGC
CCACAATATGGGACTGACAGTGGTAGGTGAAGGCGTAGAACAAACCGCACAACTCAATATATTAAAAGCACTTAATTGTG
AGGAAATTCAAGGTTATATTTATAGCAAGCCTATTAGAGAAGCTGACTTTGAGTTAATGCTCACTGCAGACAAAGTTAAA
TTTGAAGCATTAAACAGTACCTTAATGAAAAAATAA

Upstream 100 bases:

>100_bases
CAAATTTTACAGCGATAATTGTGTAATATTCTATCAATCACACCTTTTTTGTTAACATGCTTTTGACAAAGGCCCCGCTT
TCTGAAAAAGTAGACAATTC

Downstream 100 bases:

>100_bases
ATATTTACCTCTTATATTTGGCATGACAAATGCTAATACAAGTTCAGTTGTCAAAATAATATTGTTATTTAACCCTGAGC
TTCAATTACTAAATATAAGA

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1451_residues
MNFFAASKENKYKSMPKILLFICVYFIFSFGATAIEADDTESNFDLLLNYTNYGVADGLSQDTVTAIVEDPEGYVWVGTI
NGLNRFDGNEFKQFYADDNAKSLPSSFIRNLLIDDNGVLQIGTDKGLVQFDKETESFSRNSISAQIGEQAIWSISKQDGE
MFIGLNGKFISYGKNNDQNYIFEDIKLKEIKNVIKLDDIFYIRNYEGDIFKKNITTLKKVLSKSNDIISFRNNIIAATDQ
GLFVLNEEIKKISELTLTDLSTNSSNKNNIIGLYENKIFNIEIINSQIKWTSIGEIQVEGEKFIKSFISINKENFYISNY
NDGFIKISPENNYVKKIKGTPDNIWSTSKYKNNIYLVNDDSNIYIYDENVILKNIINTSLPHGPKSILLINEIAFIGTKS
GLYVINIENGIERKINNDLIVSIKYSKSENKIYSSNFKGEIQVLSPTGEITEEINTNFSYPIYDMIKIGSKLWIASQAGL
LLWENNNITKVFHDDIVFNIVVNKNKIYFGTRSAIYSMDSNTTTKPKVIFNRKKLIYSMAFIDNILVASSNREVYIIDTE
TSIAHTLNIENGVLKDYNTQSLLVMNKSVLFGGPDGLSLVEPKKILTAISKNSPDKIKFTDFLLFNSPVDIGSKTLNKPI
NNLDEITLKHSDYPFTIKFNILGKNNNDFEFFYYLEDLEKNWLSTKGNNSVTYTNLSAGKYTFKLYSENRLSGKKTDVKS
IKILVTPPWWLSLEAKLVYGLFILSLIILSFKVIIRRREIQKQIAQSEERLKLSLWGSGDEMWDWDIESGKIYRSNIWGS
LDFPQDGRRSGNPDEESNIHPLDRDRVTRALNDHFNAITDHFEIAYRVKARNQQWVWILDRAKIVERDQKDVPLRMTGTI
KDINNIKQAEEQLRLFARAIENISEGMFILNEKYQFVEVNNACCELAASTKEKFANEILHFSRYPASYSEQIRNLLKQQG
RWSGEIEASKGKDSYFLMELTIDAIYNEQGETSHYVGVFSDITRRKQQEEELRKLTNNDLLTGLPNRSSLQVTLSNLVKK
DVHHTLMVLDLDNFKRINDSLGHQIGDDLLIGVAERIKLAIPKHASLYRLGGDEFALLVDQHPDIGSCAAIATQVINCLK
PAFTLNNDSLVLGISIGIVLYPEDEQNEQALLRKADIAMYHAKSGGGNRYQFYSESLNQNALRQLEIESLIREALKDDLF
EVYYQPKIDVKKDRLNGMEALVRLNHPKLGLIGPNEFIPLAEENGLIVEIGDVVLRKACFAAQKWLELGLFSGRVAVNLS
SRQFALPDLQQRIESILRLTKLPAKHLELEITEGTVIKDPEQAIKVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPINCL
KIDKTFVDDIDKSDRDLKMVDSIITIAHNMGLTVVGEGVEQTAQLNILKALNCEEIQGYIYSKPIREADFELMLTADKVK
FEALNSTLMKK

Sequences:
NA

Specific function: NA

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA