Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

Click here to switch to the map view.

The map label for this gene is cpdB

Identifier: 114563506

GI number:

Start: 2781380

End: 2783479

Strand: Direct

Name: cpdB

Synonym: Sfri_2335

Alternate gene names: NA

Gene position: NA

Preceding gene: 114563505

Following gene: 114563509

Centisome position: NA

GC content: NA

Gene sequence:

>2100_bases
ATGTTAAATAAAAAACTTCTTGCCGTTGTTATCGCTGGTGCACTGGGATTAGGCGGTTGCGGCTCTGATAATGACGATCA
AACAAGTACTGTTGCTGCAGATATCAAGTTACGTGTAATGGAAACCACAGATCTTCATACCAATATGATGGATTACAACT
ATTACTCAGGTAAAGAAGATAAGACCATCGGTTTGGTACGTACAGCAAGTTTAATCAATGCAGCACGCGCCGAAGCCACT
AACTCGGTATTAGTCGATAACGGTGATTTATTGCAAGGTAGTCCAATGGGAGACTATATTGCCAATAAATTTAAAACTGA
AAACAACATGCTAACCGACACTCATCCTGTGTACAAGGCAATGAATACCCTAGACTACGAAGTCGGTAACATTGGTAACC
ATGAATTTAACTATGGATTATCATTCCTTGAGCAATCACTTGGTGGCGCTAACTTTCCTTATATTAATGCCAACGTAATT
TGTGCTGATAAAGATGGTTGCTGGGATGATGTATTATTCAGTGAAAACATGTTCACACCGTATATTATTAAAGACAAAGT
CGTTACCGATGTTGATGGTAATGAACATACAATAAAAATTGGTTACATCGGCTTTGTACCACCACAAATTTTACAATGGG
ATAGAGCTAACTTAGACGGTAAAGTTGAAGTATTAGGCATAGTTCAAGCGGCGAATAAATTTGTGCCACAAATGAAAGCA
GAAGGGGCTGATATCATTTTAGCCATTCCGCATTCAGGTATTGGTTCAAGTGAAAACCCTGGCGACCCATGGGCAGAAAA
CGCAACCTATGCATTAACCAACGTCGATGGTATTGATGCGATTTTCTTTGGTCACAGCCACTCTGTATTCCCGTCTGCAA
CTTACAGCGACTTACCAAATACTGACGTAGACAAAGGTTTATTGAATGGCGTTCCTGCCGTAATGCCTGGCCGCTGGGGT
GATAACTTAGGTGTGGTAGACTTAGTTGTACGCCAAGTAGAAGGGAAATGGACCGTAATTCATGAAGAATCAACTGCTAA
AGCACGCCCAATTTACGACAATGCTAATAAAGTAGCATTGGTTGAAGGTGAAGCTAGCTTACGTGATGCAATTGAAATTG
AACACAATGGTACTATCGAATATGTTAGCCAACCTATTGGGGTTGCTGCCGCTAACATGTACAGCTTTTTAACTTTAGTT
CAAGATGATCCAACGGTTCAGATTGTATCTAATGCTCAAATAGCGCGTGTTAAAACATTAATTACTGATGATCTAAAAGA
TTTGCCAATCTTGTCAGCAGCAGCACCATTTAAAGCCGGTGGACGTTATGCTGAAGGAGATGCAAGCCAATATGTACAAG
TTGATGCTGGCGACCTTTCGTATAAGAACGCTGCTGACTTATACCTATACCCAAATACTATGGTTGCAGTTAAAGCTACC
GGTGCGGAACTAAAAGATTGGTTAGAATGTTCTGCCAACCAGTTTAATCAAATTGACCCAAGCGTCAGTGCTCCACAAAA
TTTGATTAATCGCGCAGGCCACCCAACTTATAACTTCGACGTTATTGATGGCTTAACTTACAAAATTGATGTAACTCAAC
CAACTAAGTTTGACCGAAGCTGTGCTGTCGTTAACGCTGATGCAAATCGTATTGTTGACTTAGCATACACAGCACCTGAC
GGAACGGTTATTACGGGTGATGAATTAGCAGCGATGTCGTTTGTTGTGGCTTCAAATAACTACCGTGCTTTTGGTGGTTC
ATTTGCGGGTACCGGTTCAGACCACGTAGTGCTAGAACTGCCAGATACCAACCGTGATGCATTATCAGCTTATATTACTG
AGCAATCACAACCAAATGCGACTGGCGGATATGATGCTATGGTTGATCCATCAGCTGATTACAACTGGGATTTTAAAACT
ATTGATAATGCGACTGTTGCATTAGACATTCGTTTTGAAACCCAAGACAGCGATGTTGCTGACAAGTTTGTTGCTGATAA
TCAACAACGTAAAATGGTGAAGTTACCTAAAACAGCTGATGTTGTAGCCGGCTTTGCGATTTATAGCATCGACCTAACTA
CACCTGTTGCTGCGAAGTAA

Upstream 100 bases:

>100_bases
TTTTCATTTTATTATCAAAATAGTTAAGGATCGTTAACACTACGTAAGAGGCAAAAACAAAAAATACGCCTCGGGGTCAA
ATAAATATAGAGAGTAAAAT

Downstream 100 bases:

>100_bases
TTACTCGCAGACTAAATGCAAAAAAGGCGCTTTATGCGCCTTTTTTATTTTTATTACTCAGTCCTGAAATATGGCCACAC
AACTTAAATACTGTAACTAT

Product: bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>699_residues
MLNKKLLAVVIAGALGLGGCGSDNDDQTSTVAADIKLRVMETTDLHTNMMDYNYYSGKEDKTIGLVRTASLINAARAEAT
NSVLVDNGDLLQGSPMGDYIANKFKTENNMLTDTHPVYKAMNTLDYEVGNIGNHEFNYGLSFLEQSLGGANFPYINANVI
CADKDGCWDDVLFSENMFTPYIIKDKVVTDVDGNEHTIKIGYIGFVPPQILQWDRANLDGKVEVLGIVQAANKFVPQMKA
EGADIILAIPHSGIGSSENPGDPWAENATYALTNVDGIDAIFFGHSHSVFPSATYSDLPNTDVDKGLLNGVPAVMPGRWG
DNLGVVDLVVRQVEGKWTVIHEESTAKARPIYDNANKVALVEGEASLRDAIEIEHNGTIEYVSQPIGVAAANMYSFLTLV
QDDPTVQIVSNAQIARVKTLITDDLKDLPILSAAAPFKAGGRYAEGDASQYVQVDAGDLSYKNAADLYLYPNTMVAVKAT
GAELKDWLECSANQFNQIDPSVSAPQNLINRAGHPTYNFDVIDGLTYKIDVTQPTKFDRSCAVVNADANRIVDLAYTAPD
GTVITGDELAAMSFVVASNNYRAFGGSFAGTGSDHVVLELPDTNRDALSAYITEQSQPNATGGYDAMVDPSADYNWDFKT
IDNATVALDIRFETQDSDVADKFVADNQQRKMVKLPKTADVVAGFAIYSIDLTTPVAAK

Sequences:
NA

Specific function: NA

COG id: COG0737

COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA