Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

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Identifier: 114562702

GI number:

Start: 1818677

End: 1820878

Strand: Direct

Name: Not Available

Synonym: Sfri_1526

Alternate gene names: NA

Gene position: NA

Preceding gene: 114562701

Following gene: 114562703

Centisome position: NA

GC content: NA

Gene sequence:

>2202_bases
ATGTTCACGAAAAAATCTATTGGCTTACACCAAACTCCCATTGCTTTAGCTGTTATTACAGCATTGAGCTCGCCTGTTGC
TATGGCTAAAACTGCTGATGTTGAACGGGTAACTCCTGAATATGAAAAAATGGAAGTTATTGTTGTTAACGCTGACTTTA
GTAATATCAGCCTTGATAAAATGCCGTCAAGTGTGACGGTTATTGATGCCCAGCAATTAGAAGACGAAGGGGCACAACAT
TTTGAAGATGTGCTCAATTCTATTGCAAACTTTAACTGGTCTGGTGGCAGTTCTCGTCCTAAATACTTCCAAATTCGTGG
TGTCGGTGAACAAGAACAATATCAAGGTGCACCCAATTCATCTGTTGGCTTTGTCGTTGATGATATCGATTTGTCTGGCC
TTGGCATGGTGTCGAGTATGTACGACATGCAGCAAGTTGAAGTATTGCGCGGTCCACAAGGCACCCAATATGGAGCTAAT
GCGTTAGCTGGATTAATTTACTTAAAAAGTAATGATCCTACTGAATCATTTGAACATGGCGCAAAAGTCAGTTTAGGTGA
CGACAACCTTCGCACGCTTTCAGGCTTTAGTTCGGGTCCACTCAATGATTCGGGTAAATTGCTCTACCGTGTATCACTAG
AACAACACAATCAAAATGGCTACCGTGATAACCTTTATCTTAACCGTGATGATACTAATGAGCGCGATGAGTTAACGGCG
AGAGCTAAGTTCCGTTGGTACGCTACAGACGATCTTCAAGTTGATTTAACCTTATTACATGCCAATTTTGATAATGGTTA
CGATGTATGGACATTAGATAATAATCGCAGTAACACCTTAACTGACCAACCCGGTATCGATGCACAGAAAACCACAGGAG
TAGGAGTTAAGTTTATTTTCACGGGTATGCAAGCATTTGACTTCACATCATTAACATCATTTGCGCAAACTGATCATCAC
TATGCTTATGATGGTGATTGGGCCAATTCGGATTATTGGGCGAGTAAAGCATGTAGCGTCTATGACGATGCGGGAGCTGT
GTCTGGTACTGAGCCGTGTGTTTATGATTACACCTGGGACAAAAAAGGCGATCGTAAAACCTTAACCCAAGAGTTCCGTT
TATCATCCAAAGATGCAGGACGCATCCTCGCCGGTAGTACCGACTGGTTGTTGGGTGTATACGCGATGAATTTGAAAGAA
GATAACGACTTATACTCGGAATACAACACCTGGCCAGATGAAGTATTGCAGTCAAATTACGAAGCGACAAACTATGCCGT
ATTTGGTCAGCTAGACAGCCATTTAGGTGATGATTACTTATTGTCGACAGGGTTACGTTTCGAGCGTCGCGATAGTGATT
ATAGCGACAGCAATAAAGATAACTTTGCCCCATCAGAAGATATGTGGGGAGGCCATATTGCGTTGTCAAAAGCCATTAAT
GCTAATCACAATGCTTATGCTCGTGTCGCCCGCGGTTATAAGGCGGGCGGTTTTAATATGACATTGCCTGCTGAATTGTC
TGACAAGAAACAGTTCGACACTGAGATTTTATATAACTATGAAGTTGGCCTAAAATCGAGCTGGTTTGATGGAGAAGTGG
ATTCTACCTTGGCGCTGTTTTATATGGATCGCCAAGATCAACAAGTTGCCGCATCTTTACAAGACCCAGATAGCCCGCAG
CGTTTTATTCTATTTACCGAAAATGCCGGTAGTTCAAGTAACTATGGCGCGGAACTCGATGCAAAATGGTATTTGACAGA
AAATATTGAATTTTATGGTAGTTTCGGTTGGTTAGAAACTGAATATGGTCAATATCAATACAGTGACAAATACGGTTCTA
CCATCGATTTATCTGGACGCGATTTAGCGCATTCGCCTAAATTTACTTACAGTGCCGGTATGACCTATGTTGCTGATTCT
GGTTGGTTTGCAAACGTGAATGCCAGTGGTAAAAGCCAGTTTTATTATTCTGACAGCAATGAATCGCAGTCAGAAGCCTA
TACCATTTACAACGCCCGCCTAGGTTATGAAACGCCAACATGGTCGGCATATTTATGGGGCCGTAATTTGTTTGATGAAC
AATATGGTGTGCGAGGCTTTTACTTTGGCAACGAACCAGATCAAGATTGGGCAGATAAGCAATATATTCGTTACGGTGAT
CCGCGCCAAATGGGTGTGACATTAGAAGTTAAATTTATGTAA

Upstream 100 bases:

>100_bases
TGATCCGGCTTATACCGGCGTAGGAATGGGCCACACTATCTTTATGTGCACCTCTTATTCGCTACTCTTGCCGGATCTCA
AAATAATTATTTGAGGTCCT

Downstream 100 bases:

>100_bases
TGACACAAAACCGCTGCAACCACAGTTGTAGCGGTTTTAATTAAGGAATAAAAAATGAAGTTAACTGCAGAGATCAGCAT
GTATCCGTTTAATGAGAACT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>733_residues
MFTKKSIGLHQTPIALAVITALSSPVAMAKTADVERVTPEYEKMEVIVVNADFSNISLDKMPSSVTVIDAQQLEDEGAQH
FEDVLNSIANFNWSGGSSRPKYFQIRGVGEQEQYQGAPNSSVGFVVDDIDLSGLGMVSSMYDMQQVEVLRGPQGTQYGAN
ALAGLIYLKSNDPTESFEHGAKVSLGDDNLRTLSGFSSGPLNDSGKLLYRVSLEQHNQNGYRDNLYLNRDDTNERDELTA
RAKFRWYATDDLQVDLTLLHANFDNGYDVWTLDNNRSNTLTDQPGIDAQKTTGVGVKFIFTGMQAFDFTSLTSFAQTDHH
YAYDGDWANSDYWASKACSVYDDAGAVSGTEPCVYDYTWDKKGDRKTLTQEFRLSSKDAGRILAGSTDWLLGVYAMNLKE
DNDLYSEYNTWPDEVLQSNYEATNYAVFGQLDSHLGDDYLLSTGLRFERRDSDYSDSNKDNFAPSEDMWGGHIALSKAIN
ANHNAYARVARGYKAGGFNMTLPAELSDKKQFDTEILYNYEVGLKSSWFDGEVDSTLALFYMDRQDQQVAASLQDPDSPQ
RFILFTENAGSSSNYGAELDAKWYLTENIEFYGSFGWLETEYGQYQYSDKYGSTIDLSGRDLAHSPKFTYSAGMTYVADS
GWFANVNASGKSQFYYSDSNESQSEAYTIYNARLGYETPTWSAYLWGRNLFDEQYGVRGFYFGNEPDQDWADKQYIRYGD
PRQMGVTLEVKFM

Sequences:
NA

Specific function: NA

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA