| Definition | Shewanella frigidimarina NCIMB 400, complete genome. |
|---|---|
| Accession | NC_008345 |
| Length | 4,845,257 |
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Identifier: 114562239
GI number:
Start: 1248096
End: 1250681
Strand: Reverse
Name: Not Available
Synonym: Sfri_1061
Alternate gene names: NA
Gene position: NA
Preceding gene: 114562247
Following gene: 114562225
Centisome position: NA
GC content: NA
Gene sequence:
>2586_bases ATGACAGTGATTGATACCAGCGATTTAGAAAAACACACCCCGATGATGCGCCAGTATTTGGGCTTAAAAGCGGCCCATCC TGATATGTTATTGTTTTATCGAATGGGTGATTTTTATGAGCTGTTTTACGATGACGCTAAACGCGCTTCTGAAATGCTAG GTATTTCACTGACGGCTCGTGGAAAAAGCGGCGGAGACCCGATTCCCATGGCAGGCATTCCATATCACGCCGTCGAAGGC TATTTAGCAAAATTAGTTAACATTGGTCAGTCTGTGGCTATTTGTGAGCAAATTGGTGATCCAGCGACATCGAAAGGGCC CGTTGAACGCCAAGTGGTGCGTATTGTGACCCCTGGCACCTTAACCGACGAAGCTTTACTGCAAGAAAAACAAGACAATT TACTGGCGGCACTGTATCAGGGTAAAACGGGTTTTGGTTACGCGACGTTGGATATTTCATCAGGTCGTTTTGTGGTTGCT GAATTACCCACTCGTGAAGCTTTAGAAGCCGAATTACAACGCACTAATCCAGCTGAGCTACTGTACAGTGAAGATTTTAC TGACATGTTATTGATCAATAATATGAAAGGCATCCGTCGTCGCCCTGAGTGGGAGTTTGACTACGACACCTGTATTAATT TACTGCTCAATCAATTTGGCACCAAAGATTTACACGGTTTTGGAATTACTGATGCACGATTAGCGTTACAAGCTGCAGGT TGTTTAATGCAGTATGTCAAAGATACCCAAAAGATGGCGTTGCCACATATCAACTCGATTGTGCGCTTTAATCAATCAGA ATCAATTATTTTAGATGCCGCAACCAGACGTAATTTAGAGTTAACTCAAAATTTATCTGGTGGGCGGGAGAATACTCTCG CATGGGTATTGGATAATACTGCCACCCCTATGGGTAGCCGTATGTTACAACGTTGGATCCATGAGCCATTACGCAATCGT CAAACAATTCAATATCGACATAGTGCGGTCAGTGAACTGATTGAACAAGATTTGTATCAAACGTTACATGAGCAACTAAA AAGCTTAGGTGATATCGAACGTATTATGGCTCGTTTAGCACTACGTAGTGCCAGACCACGTGATTTTTCACGCTTAAAGC AAGCACTAACGCTTCTGCCTGAAATCCAGCAAACATTAGCAATATGCCAACAACCTCGATTAAACACGTTAGTACAATTA CTGGGTGAATTTCCTGAACAACACGATTTATTAGAACGCGCTATTGTAGACAACCCTCCCATGTTAATTCGTGATGGTGG CGTTATCCGTACTGGCTATAATAATGAGTTAGATGAATGGCGCAAGTTGAGTGAAGGCGCCAGTGATTATTTAGTCGAAC TTGAAGCTCGTGAGAAACAACAAACAGGGATTAATACCTTAAAAGTCGGCTATAACCGAGTTCATGGTTACTATATTGAA GTGAGCCGTTTACAGTCAGATAGAGTGCCACTGAGCTATCAGCGCCGCCAAACACTCAAAGGCACCGAACGTTATATCAC CCCAGAATTGAAAGAATACGAAGAGAAAGTACTGTCTAGCCAGGGCAAAGCACTCGCGCTTGAAAAACAACTGTGGGAAC AACTGTTTGACTTGTTGTTACCTAAACTACAAGAATTACAGCAGTTTGCAACGGCTGCTGCCGAGTTAGATATATTAAGT AACTTTGCCGAACGAGCAGAGTTATTTAATTATCAATGCCCACAAATGAGCCACGACATTGGCATTAATATTGAAGCGGG CCGCCATCCTGTCGTTGAGCGAGTTAGCCAAGCAGCGTTTATTGCTAACCCAGTTGCATTAACACCACAGCGCCAAATGC TTATTGTTACAGGCCCAAATATGGGCGGTAAATCAACCTATATGCGCCAAGTAGCATTGATTACATTAATGGCACATATC GGCTGTTTCGTTCCAGCAGACCATGCTCAAATTGGTGAAATCGACCGGATTTTTACCCGTATTGGTGCATCAGATGATTT GGCATCAGGCCGGTCAACTTTCATGGTTGAAATGACCGAAACAGCTAATATTTTACATAATGCGACTGCGAACAGTTTAG TGTTAATGGACGAAATCGGTCGCGGCACCTCAACCTATGATGGTTTGGCACTCGCTTGGTCTGCTGCTGAATATCTTGCG AAAAACGTCAGTGCCCTGACATTATTTGCTACTCATTATTTTGAGTTAACCCAATTGCCCGAGCTGTTACCGTCAGTAAT TAATGTGCATTTAGATGCAATAGAACACGACGACACAATTGCCTTTATGCATTCGGTACAAGAAGGTGCTGCAAGTAAAA GTTATGGTCTACAAGTTGCAGCCCTAGCGGGTGTTCCGGCCTCCGTCATTAAAGCGGCAAAACATAAGCTTCATCAACTG GAAAACCGAGATATGACATTATCTCAACAGAATCCAACTCAAGTGAGTATGAACTTATTACCTCCAATTCCAGAGCCATC ACTAGCACTGGAAAAGTTAGCCCAAATTAATCCAGACGAGTTGACGCCGAAGCAGGCTTTAGATTATTTGTATGAATTGA AGCGATTAAGTCACACGAACACCTAG
Upstream 100 bases:
>100_bases ATTTTTTGTTTGAATCTATTTATACGCTGGGGACAAATATTGTTAAGATTAGCCCCATAAGATTTACGTCCTACGATTGA TTAATAGTGAAGTGTTCATA
Downstream 100 bases:
>100_bases CGCCGAAAATAACTGCTTAAGTGTTTTTTTGAACTGTGGAAGCCTGCAAAGGCTTCCATTTCAATGACATATCAGGTGTT ACATCGAACAAGTAACAGTC
Product: DNA mismatch repair protein MutS
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>861_residues MTVIDTSDLEKHTPMMRQYLGLKAAHPDMLLFYRMGDFYELFYDDAKRASEMLGISLTARGKSGGDPIPMAGIPYHAVEG YLAKLVNIGQSVAICEQIGDPATSKGPVERQVVRIVTPGTLTDEALLQEKQDNLLAALYQGKTGFGYATLDISSGRFVVA ELPTREALEAELQRTNPAELLYSEDFTDMLLINNMKGIRRRPEWEFDYDTCINLLLNQFGTKDLHGFGITDARLALQAAG CLMQYVKDTQKMALPHINSIVRFNQSESIILDAATRRNLELTQNLSGGRENTLAWVLDNTATPMGSRMLQRWIHEPLRNR QTIQYRHSAVSELIEQDLYQTLHEQLKSLGDIERIMARLALRSARPRDFSRLKQALTLLPEIQQTLAICQQPRLNTLVQL LGEFPEQHDLLERAIVDNPPMLIRDGGVIRTGYNNELDEWRKLSEGASDYLVELEAREKQQTGINTLKVGYNRVHGYYIE VSRLQSDRVPLSYQRRQTLKGTERYITPELKEYEEKVLSSQGKALALEKQLWEQLFDLLLPKLQELQQFATAAAELDILS NFAERAELFNYQCPQMSHDIGINIEAGRHPVVERVSQAAFIANPVALTPQRQMLIVTGPNMGGKSTYMRQVALITLMAHI GCFVPADHAQIGEIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATANSLVLMDEIGRGTSTYDGLALAWSAAEYLA KNVSALTLFATHYFELTQLPELLPSVINVHLDAIEHDDTIAFMHSVQEGAASKSYGLQVAALAGVPASVIKAAKHKLHQL ENRDMTLSQQNPTQVSMNLLPPIPEPSLALEKLAQINPDELTPKQALDYLYELKRLSHTNT
Sequences:
NA
Specific function: NA
COG id: COG0249
COG function: function code L; Mismatch repair ATPase (MutS family)
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA