Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 114561776

GI number:

Start: 684488

End: 687922

Strand: Reverse

Name: Not Available

Synonym: Sfri_0590

Alternate gene names: NA

Gene position: NA

Preceding gene: 114561780

Following gene: 114561774

Centisome position: NA

GC content: NA

Gene sequence:

>3435_bases
ATGGATAGTTTTTTCAGTTTGATGAGCAACACCGTATTGTTACTGGCACTTGTCGTCATTTATGATGCCATAAAATTACA
AAAAATAGCCCCCAAGAAATATGGAAATGTCTTGAGTGGGATTTTTATTGGAATGATCGCAATTTGTGTCATGAACAATC
CTTGGGAGCTAAGGCCGGGGATTTTTTTTGACACTCGCTGGGTACTGTTAAGTTTAAGCGGGCTATTTTTTGGTTTTATC
CCGACATTGATTGCCACGATACTCGCCGCTTGTTTCCGTCTTTATCAAGGCGGTGCCGGTTTATACGTTGGTACTTTAAT
TATTTTCATCAGCTCTGCCATTGGGTTGGGCTGGCGATACTGGATGAAGTCTGCAAACAAACAGCCCAATTGGCAAAACT
TATTGGCCATGGGCTTTGTCGTGGAGATTGGCGTTTTGCTGTGTTTATTACTCATGCCAGTGGCAGATAAATACGACATT
ATTCTCACCATTAGTCCGACATTATTCACTGTTTATACATGTGGCACTATGTTAATTGGATTATTACTAAAACAGCATCA
ACAAAGGCAACAAATATCTCAAGAATTACATCATCACAAAAACCTCCTCGAAACCGAGAAAAACCTGTTACAAAGCATTA
TTGATGGTATTCCCGATATCATTTTTTACAAATCGGCCGACGGGGTTTATTTAGGTTGTAACAAAGCATTCTCTGAAGCT
CTAAAACTCAACCCCGAAGATATTAAACATAAGACAGACTATGACTTATTTGACCGTCAACAGGCAGATAGCTTTATCAA
AGCCGATCGTTTTGTTTTACAAGAAAACCAGCCGTGGATGGATGAAGAATGGATAACGACACCTGATGGTATAGCACATA
TTTTTAAAACTCATAAAACACCTTTTGTTGATTCGTCCGGAGATATTCAGGGAATTGTGGGCGTAAGTAGAGATATGGCC
GACAGAAAACTCATTGAAGAACAGTTACGTCGCAGTGAAAGTACTTATCGTAATATTATCAGTACTGCGCAAGATGGCTT
TGTTATTGTATCGGTGGACGGAAAGATAATTGAGTCGAATCAGAGTTTCGCTGATATGACCGGTTATACACTCGACGAGC
TATTCAATAAACCTATTGGGGATATCGAAACCAGTGAAAACCACCAGTTTTCAACTCAAAATATTATTACAGCCAAGCAA
GTAAAGGCGATTCATTATACTTCTCAACACAAACATAAATTGGGCTATTTATTTCATGTTGAGGTGAACATCAGCTTTTG
GGATGGTGATGATGGAATGTTCTTCTGCTTTATTAAAGACATTTCACAGCGCATAAATGCTGAACAAAAACTGCTTCTGA
GTGAGTCTAAATTCAGGCACATTTTCGAAAATATACCCTCAATTTCAGTCCAAGGTTACGATAAAAACCGTTCGGTCATT
TTTTGGAACCAGGCCAGTGAAAAGCTTTATGGATATACAAAAGAACAAGCATTAGGGAAAAAGTTAGAAGATCTCATTAT
TCCCCCTCCATACAGAGAACATGTGATCAATAACGTTAATGCATGGATTAATGAAGGGGTTCCTATTCTTGCAGAAGAAT
TACTCCTGCAACGGGCAGATGGTAGCAATGTAGCAGTTTATTCGTCTCATACATTAATAAACAACACTGATAATGAAGCA
GAAATGTACTGCATTGATATCGATTTGAGCGCCCAAAAAAAGGCTGAGGAACAAGCGCTTACACTGTCACAAGCAATAGA
GCAAAGCCCTATATCAATGATATTAACCAATATCGATAGCAAAATTGAATATGTGAATAGTGCCTTTGAAAAAATTTCTG
GCTACGCCGCAAGTGAAGTTATTGGCCAGTCAGCCAGCATGCTTAAATCTGGTTTAACCCCAAAATCACTTTATAAACAA
TTATGGGATGCGATTTCTACTGGGCATGCATGGCAGGGCGAGTTGCAGAATAGAAAGAAAAACGGTGATATTTTTTGGGA
ACATGCCCATATCGCACCCATTTTTGACAATGCAGGCGTCACTAAGCACTATTTAGCATTGAAACAAGATGTCACCCAAT
ACAAACAACAAGAAGAAAAAATACTTCACCAAGCTCATTACGATAGCTTAACAGGCTTGCCAAATAGACTGCTGTCACTT
GATAGATTATCGCAAATGCTCAAAGACGCCCATCGAGCAAAAAATAACGTGGCGGTACTGTTTTTAGATTTAGACGATTT
TAAAAAGGTTAATGACACCATGGGTCACTCTGTTGGTGATGAACTGTTGATCCAAGCTGCGGTTCGGTTAAAGAATACCA
TTAGAGAAAGTGATGTTGTGGGGAGATTGGGTGGTGATGAATTTATCATTATACTGAGCAATATTAATGAACCCATTGAA
GTTGAAATTATTGCCAGTAAGCTACTCGAGCAATTTTACCAACCTTTTAGGCTCGAAAACCGTGAGTTAGTGTCAACCAT
CAGTATTGGTATTGCCCTTTACCCGCTTGACAGTGAAGACCCCAAAGAATTGCTAAGACAAGCAGATTCAGCCATGTACC
ATTCAAAAGATCGCGGCAGAAATACCTATAACTTCTATACACATCAAATGAACCACGATATGGATAGGCGCTTGAAAATT
GAAGAGCAATTACGCAGTGCATTGAAGCAAAAAGAATTCGAGGTTTACTTTCAACCCTTTGTGGACATCAAGAGTCGTAA
AATCATCGGCGCGGAAGCTCTTTTACGTTGGAATAATGCTTTGCTCGGTCAAGTGACTCCTGATGAGTTTATCCCTATTG
CAGAACAAACAGGACTCATTGTCTCAATTGGCCAATATGTTATCGAGGTTGCATTTGCTACAGCCAAAAAGTGGCAACAA
ACTTATAATCCTTACTTTAAAATTGCCATTAATGTTTCCCCGAAACAATTCAGGGAAAATACCTTTGTTGATATGCTTAA
CATTCAGCTAGATAAACACCAAATTCATGCCAGCACTATAGAGCTTGAAATTACTGAAGGGGTATTACTCAGTAGCGATG
CAGTCATCGACAGCAACTTAATATCCATTAACGATATTGGTGTCAGTATTTCAATGGACGATTTCGGTACCGGATATTCG
TCGCTCAGTTACCTGCGCAGTTACCCATTCAATACCTTAAAAGTAGATAAAAGTTTTATTAACGATATAACAGTCGATCC
TGGGGATCTAGAACTTGTTGGTGCGGCGATCGCTATGGGGCATGGGCTTAATTTAACGGTCGTGGCAGAAGGCGTTGAAA
CAGAAGAGCAGTATCATCTGCTTAATGCATTGAAATGTGATTACGGCCAAGGTTACTTATTTAGTAAACCATTACCCCAA
GCGGCATTTGAAGCGCTTTTACTGAAACAAGCAAAAAATGAAAAAACCAATAAGAGATCCTCAATAAGACGCTGA

Upstream 100 bases:

>100_bases
AAACCTTATTAACACAATGATAAAAATAGATTTATTTTTTATTATTGTCAGATTTGAACTACAGTAAAAGAAGGCAATGC
CCTTTTTATGTGGGGAAGAA

Downstream 100 bases:

>100_bases
TAAAAAATGCCTATCAGCAAGCTGACAGGCATTAATAAATCTATTGGTCATTAAGCGATTTCAACTTAACAATACTCGAG
AAAAATTAGCTTATAGAGTG

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1144_residues
MDSFFSLMSNTVLLLALVVIYDAIKLQKIAPKKYGNVLSGIFIGMIAICVMNNPWELRPGIFFDTRWVLLSLSGLFFGFI
PTLIATILAACFRLYQGGAGLYVGTLIIFISSAIGLGWRYWMKSANKQPNWQNLLAMGFVVEIGVLLCLLLMPVADKYDI
ILTISPTLFTVYTCGTMLIGLLLKQHQQRQQISQELHHHKNLLETEKNLLQSIIDGIPDIIFYKSADGVYLGCNKAFSEA
LKLNPEDIKHKTDYDLFDRQQADSFIKADRFVLQENQPWMDEEWITTPDGIAHIFKTHKTPFVDSSGDIQGIVGVSRDMA
DRKLIEEQLRRSESTYRNIISTAQDGFVIVSVDGKIIESNQSFADMTGYTLDELFNKPIGDIETSENHQFSTQNIITAKQ
VKAIHYTSQHKHKLGYLFHVEVNISFWDGDDGMFFCFIKDISQRINAEQKLLLSESKFRHIFENIPSISVQGYDKNRSVI
FWNQASEKLYGYTKEQALGKKLEDLIIPPPYREHVINNVNAWINEGVPILAEELLLQRADGSNVAVYSSHTLINNTDNEA
EMYCIDIDLSAQKKAEEQALTLSQAIEQSPISMILTNIDSKIEYVNSAFEKISGYAASEVIGQSASMLKSGLTPKSLYKQ
LWDAISTGHAWQGELQNRKKNGDIFWEHAHIAPIFDNAGVTKHYLALKQDVTQYKQQEEKILHQAHYDSLTGLPNRLLSL
DRLSQMLKDAHRAKNNVAVLFLDLDDFKKVNDTMGHSVGDELLIQAAVRLKNTIRESDVVGRLGGDEFIIILSNINEPIE
VEIIASKLLEQFYQPFRLENRELVSTISIGIALYPLDSEDPKELLRQADSAMYHSKDRGRNTYNFYTHQMNHDMDRRLKI
EEQLRSALKQKEFEVYFQPFVDIKSRKIIGAEALLRWNNALLGQVTPDEFIPIAEQTGLIVSIGQYVIEVAFATAKKWQQ
TYNPYFKIAINVSPKQFRENTFVDMLNIQLDKHQIHASTIELEITEGVLLSSDAVIDSNLISINDIGVSISMDDFGTGYS
SLSYLRSYPFNTLKVDKSFINDITVDPGDLELVGAAIAMGHGLNLTVVAEGVETEEQYHLLNALKCDYGQGYLFSKPLPQ
AAFEALLLKQAKNEKTNKRSSIRR

Sequences:
NA

Specific function: NA

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA