Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 114561330

GI number:

Start: 161443

End: 165669

Strand: Direct

Name: Not Available

Synonym: Sfri_0142

Alternate gene names: NA

Gene position: NA

Preceding gene: 114561329

Following gene: 114561331

Centisome position: NA

GC content: NA

Gene sequence:

>4227_bases
GTGAAAGACTTATTAAAGTTTCTTAAACAGCAAAGTAAGACTGAAGAATTTAACGGTATAAAAATTGGTTTGGCCTCGCC
AGATCTAATCCGTTCTTGGTCTTTTGGTGAAGTAAAGAAGCCAGAAACCATTAACTACCGTACATTCAAGCCTGAACGTG
AAGGTTTGTTCTGTGCGCGTATCTTTGGTCCAGTTAAAGATTACGAATGTTTGTGTGGTAAATACAAGCGTTTGAAGCAT
CGTGGTGTTATTTGTGAAAAGTGTGGCGTAGAAGTTACCCAGACTAAAGTGCGTCGTGAACGCATGGGTCACATTGATCT
GGCTAGCCCAGTTGCCCACATTTGGTTCTTAAAATCACTTCCGTCACGTATTGGCTTAATGCTAGATATGACGTTGCGTG
ATATTGAACGCGTACTGTATTTCGAATCATTTGTTGTGATCGAGCCTGGCATGACCACGCTTGAGCGCGGCCAAATGCTA
ACCGAAGAAACGTATCTTGATGCGTTAGAAGAATACGGTGACGAGTTTGAAGCTAAAATGGGTGCTGAAGCAGTTCTTGA
ATTGCTACGAGCTATCAACTTAGCTGAACAGATCGAGCAAATGCGCGAAGAGTTGCCTTCAATTAACTCTGAAACCCGTC
GCAAGAAGGTCACTAAGCGCCTTAAGCTGATGGAAGCATTCTTCACATCTGGCAACAAGCCAGAGTGGATGATCTTAAAA
GTATTACCGGTTCTTCCACCTGATCTACGTCCATTAGTGCCGTTAGATGGTGGTCGTTTCGCGACATCTGATCTTAATGA
TCTATACCGTCGTGTGATTAACCGTAACAACCGCTTAAAGCGTCTGTTAGATTTAGCTGCGCCTGACATTATCGTACGTA
ACGAAAAACGTATGTTACAAGAGTCAGTTGATGCGCTATTAGATAACGGTCGTCGCGGTCGTGCTATTACGGGTTCTAAC
AAGCGTCCGCTTAAATCTCTTGCTGATATGATCAAGGGTAAGCAAGGTCGTTTCCGTCAGAACTTACTTGGTAAGCGTGT
TGACTATTCAGGTCGTTCGGTAATTACCGTAGGTCCTACTTTACGTCTGCATCAGTGTGGTCTTCCTAAGAAGATGGCAC
TTGAGCTATTCAAGCCATTTATTTACGGCAAGCTAGAAGCCCGTGGTTTAGCGACTACGATTAAAGCTGCTAAGAAAATG
GTTGAACGCGAACAGGCTGAAGTATGGGATGTGTTAGACGAAGTAATTCGTGAACATCCAGTAATGCTTAACCGTGCACC
AACACTTCACAGACTAGGTATTCAAGCATTTGAACCTGTTCTGATTGAAGGTAAAGCAATTCAATTGCATCCGTTAGTTT
GTGCGGCATACAACGCCGACTTCGACGGTGACCAAATGGCGGTTCACGTTCCATTAACGCTTGAAGCTCAGTTAGAAGCT
CGTGCGCTAATGATGTCAACCAACAACATTTTGTCACCTGCTAACGGTGAGCCTGTAATTACTCCGTCTCAGGACGTTGT
ATTAGGTTTGTACTACACCAGCCGTGAATGTATTAACGGTCGCGGTGAAGGTATGGCGTTCGCTGATGTGTCAGAAGTAG
AAAAAGCTTACGCTACTGGTGTTGCTGAACTACATGCTCGCGTTAAAGTACGGATTACCGAAACGAACATCGCAGATGAT
GGCGAAAGAACTAAATCAACTCGTATCATTGATACCACAGTTGGTCGTGCTCTTTTATCATTAATTTTGCCTGAAGGCTT
ATCGTATGATTTGGTTAACCAAAACATGGGTAAGAAACAGATTTCTAAACTGTTGAACACTTGTTATCGTCAACTAGGTC
TTAAAGATACAGTTATCTTTGCTGACCAATTGATGTATACCGGTTTCCGTTTTGCAACCATTTCTGGTGCCTCTGTTGGT
ATCGATGACATGGTTATTCCAGACGAGAAATACACCTTAGTAGCTGACGCTGAAGCTGAAGTGCTTGAAATTCAAGAGCA
GTTCCAATCAGGTCTTGTTACTGCCGGTGAGCGTTACAACAAAGTCATCGATATCTGGGCAAGTGCGAACGAAAAAGTTT
CAAAAGCGATGATGGAAAACCTGTCAACTGAGACAGTGATTAACCGTGATGGCGTACCTGAGCAACAAGCTTCGTTTAAC
AGCATCTATATGATGGCTGACTCGGGCGCTCGTGGTAGTGCTGCACAGATCCGTCAGTTAGCGGGTATGCGTGGTTTGAT
GGCTAAGCCAGATGGCTCAATCATCGAAACCCCAATTACGGCTAACTTCCGTGAAGGTCTAAACGTACTTCAGTACTTTA
TTTCTACTCACGGTGCGCGTAAAGGTCTTGCCGATACAGCATTGAAGACAGCTAACTCGGGTTACTTGACTCGTCGTTTA
GTAGACGTTGCACAAGACTTAGTCGTTATCGAAGATGACTGTGGTGTTGAGCATGGTCTTACAATGAAACCGCTTATTGA
AGGTGGTGATGTTGTTGAGCCATTGCGTGAACGTGTTCTAGGTCGTGTAGTTGCTCTTGACGTAATGAAGCCAGGTACTA
ATGAAGTGCTTGCTCCACGCAACACACTTCTTGATGAAGCATGGTGTAATACGTTAGAAGAACACAGCATTGATGAAGTG
ATTGTACGTTCTGTAATTACCTGTGACACAGACTTCGGTGTGTGTGCAGCGTGTTATGGTCGTGACTTGGCTCGTGGTCA
TATTATTAACCACGGTGAAGCTATTGGTGTTGTTGCAGCTCAGTCAATTGGTGAACCTGGTACACAGTTAACCATGCGTA
CCTTCCACATTGGTGGTGCGGCATCTCGAGCTTCTGCAGAAAACAACGTTCAAGTTAAGAATGCGGGTTCTCTGAAGTTA
CACAATGCTAAGCATGTTTCTAACATCGACGGTAAGCTCGTTATCGTATCTCGTTCTTCTGAGTTAGCTATCATCGATGA
GCTAGGTCGTGAGAAAGAGCGTTATAAAGTGCCTTACGGTACAGTATTAGAGAAATTGGAAGACAGTGAAGTTGCAGCTG
GCGAAATCATCGCTAACTGGGATCCACATACTCACCCAATTATTTCTGAAGTTGCTGGTAGCGTGAAGTTCGTTGACATG
ATTGATGGTGTCACTATGACACGTCAAACAGATGAGTTAACGGGCCTATCTTCTGTCGTTGTGCTCGATGTTGGTGCGCG
TACTTCAGCCGGTAAAGAATTGCGTCCAGCAATTCGCTTAGTTGATGCTGATGGTAATGACTTAATGATCCCTGGTACTG
AAGTACCAGCTCAATACTTCTTACCGGGTAACGCGATTGTATCGAAAGATGATAACGCGAAAATCAACGTTGGTGATCCA
TTAGCACGTATTCCACAAGAATCGTCTAAAACTCGCGACATCACCGGTGGTCTTCCACGTGTTGCTGACTTATTCGAAGC
GCGTAAACCAAAAGAGCCTGCAATTCTTGCAGAAATCTCTGGTACGATCTCGTTCGGTAAGGAAACGAAGGGTAAACGTC
GTCTAGTGATCACTCCAGCTGATGGCAGTGAACATTATGAAGAAATGATCCCTAAGTGGCGTAACTTGAACGTGTTCGAA
GGTGAAAAAGTCGAACGTGGTGAAGTTATTGCAGACGGTCCAGAAGCGGCTCATGACATCTTGCGTCTTCGTGGTATCCA
CAACGTAGCAAACTACATTGTGAACGAAGTACAGGACGTTTACCGTCTACAGGGCGTTAAGATCAACGATAAGCACATCG
AAGTTATCATTCGTCAAATGTTACGTAAGTGTTTAATCACTTCAACAGGCGACACTGAGTTCTTAGAAGGTGAGCAAGCA
GAAGTATCACGCGTGAAGATTGCTAACCGTGAGTTAATCGCTCAAGGTAAAACACCCGCAACGTTTGAACGTGAATTACT
CGGTATTACCAAAGCTTCTTTGGCAACTGAATCATTCATCTCTGCAGCATCGTTCCAGGAGACCACTCGTGTGTTAACTG
AAGCGGCCGTTGGCGGTAAGAGCGATCCATTACGTGGTTTGAAAGAAAACGTAATCGTAGGTCGTTTGATCCCAGCAGGT
ACAGGTTATGCTTATCACAAAACCCGTAACGAAGAACGTGCTAAAATATTAAGCTCTCGTGGCAAAGTGGAAACTACTAC
AGTAACCGCAAGCGAAGCTGAAAAGAACCTAGCAGATCTACTAAATCTGGCTGGTAGCCAAGATTAA

Upstream 100 bases:

>100_bases
GAGTTGGACCAAGAGTAAGCATCGCACTTAAGCAATGTTTGGTAACCAAGGGTGCTTTGCATAAGCAAAGCACCTGGTTT
AACTCCTTCAGGAGAGAAAC

Downstream 100 bases:

>100_bases
GTTAGTAATTTGTTAAAAAAAGGCGCCAATGGCGCCTTTTTTATTGGAATTTGCACGAAAAGTTGTCTATTTCTTGACAG
GCAGCCATTACCTTTCTAAA

Product: DNA-directed RNA polymerase subunit beta'

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1408_residues
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCARIFGPVKDYECLCGKYKRLKH
RGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSLPSRIGLMLDMTLRDIERVLYFESFVVIEPGMTTLERGQML
TEETYLDALEEYGDEFEAKMGAEAVLELLRAINLAEQIEQMREELPSINSETRRKKVTKRLKLMEAFFTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQESVDALLDNGRRGRAITGSN
KRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKM
VEREQAEVWDVLDEVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRECINGRGEGMAFADVSEVEKAYATGVAELHARVKVRITETNIADD
GERTKSTRIIDTTVGRALLSLILPEGLSYDLVNQNMGKKQISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVG
IDDMVIPDEKYTLVADAEAEVLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVPEQQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL
VDVAQDLVVIEDDCGVEHGLTMKPLIEGGDVVEPLRERVLGRVVALDVMKPGTNEVLAPRNTLLDEAWCNTLEEHSIDEV
IVRSVITCDTDFGVCAACYGRDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGSLKL
HNAKHVSNIDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEDSEVAAGEIIANWDPHTHPIISEVAGSVKFVDM
IDGVTMTRQTDELTGLSSVVVLDVGARTSAGKELRPAIRLVDADGNDLMIPGTEVPAQYFLPGNAIVSKDDNAKINVGDP
LARIPQESSKTRDITGGLPRVADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGSEHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQMLRKCLITSTGDTEFLEGEQA
EVSRVKIANRELIAQGKTPATFERELLGITKASLATESFISAASFQETTRVLTEAAVGGKSDPLRGLKENVIVGRLIPAG
TGYAYHKTRNEERAKILSSRGKVETTTVTASEAEKNLADLLNLAGSQD

Sequences:
NA

Specific function: NA

COG id: COG0086

COG function: function code K; DNA-directed RNA polymerase, beta' subunit/160 kD subunit

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA