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The map label for this gene is ycbB [H]

Identifier: 114332479

GI number: 114332479

Start: 2659016

End: 2660701

Strand: Reverse

Name: ycbB [H]

Synonym: Neut_2532

Alternate gene names: 114332479

Gene position: 2660701-2659016 (Counterclockwise)

Preceding gene: NA

Following gene: 114332478

Centisome position: 99.99

GC content: 45.14

Gene sequence:

>1686_bases
ATGGCCCTTTTAAACCGGGAATACAGGAATATTTTTTTGTTATTTATTCAAAATTCCAAAAAGTTCTGGATCAATCCTTC
AGCGGCAGCGCGGTATTTAACCTTTCTTGCGCTGATGTTTACGATTTTGCCCGTCATTGCTGAAAATTGGATTGCCAGCG
CAGAATCGATACGCGAACAACTGGCAAAAAATATTCAGAACAATCAGGATAGTGCGGTACAGATAAACCTGCAGCGATTT
TATGCGCAACGTGATTATCAACCAGTCTGGACTTTGGCTGGTCATTCTGCTGTCTTGCTGGACACTGCGTTAGTGCTTAT
TAGGCAGGCTGATGAAGAAGGGCTTTCCAGCAATGATTACCATATTGAATCCTTACGAAAACTTCGTAACGAAACTTCTG
ATCCAATTTCCCTACTACTCGAACTGGATACAACCCGATCATTGCTGGCGCTTGCCCATGATTTGCACAGTGGCCGGCTG
ACGGCTTCTCTGGCTGATCCGGACTGGCACATTCCACAACAGCAATTTGATCCGGTAACGTTTCTGCAGCAAGCACTCAC
TTCAGGAAAACTGGAACAGGCCTTTGCAGATTTGCCACCTGATATTCCACAATACCGTTCGCTCAAACAACTGTTGAACA
AATTTCGTACACTGGTTGCTGCCGATACCATATGGACCAGGATACCGGAGGAAACTTCATTGATTCGCCCGCATACCAGG
CATACTTCTATTCCACAGGTACGTCAACGTATTCAGGAGGCATATCATATTTTTGAAAAACCGGAATATGGTATTGTTGT
CAGTGATAGCGAGTTTTATGATGATCAGCTGGAAATAGCGGTCAAGGCCTTTCAGCGTCAACACGGATTAAATGCAGATG
GCATTATTGGTAAAAATACCCGGCGAGCCATGAACATAACGCCAGGAGAGCATGTTCAGCAGTTGCGTATCACGCTTGAA
CGATTGCGCTGGCTGCCCAGGAAACTCGGTGATCGCTATATCCTGGTCAATATTGCCGGATTTAATCTGGTGGCAGTCCA
GGAGAATGTGCGCGTGCTGGATATGAAAATAGTTGTCGGGCGCGATTATCGTTCAACACCAAGTTTCAACAGCAAAATTA
CTCACCTGGTTCTTAACCCGTACTGGAATGTGCCTGCCAGCATTGCACGCAAGGATTTACTGCCAAAACAGAGATATAAC
CCGGATTATTTTGCTTCCGAGGGAATCAGGGTATTTTCCGATTACAAATATGAATCCGAGCTGAATCCTGATTTTATCGA
CTGGCATTCGACCAGCAGATCTCTTCCTTATATCTTGCGCCAGGATCCTGGTAGAAGAAATGCACTGGGCACTATCAAAT
TCATGTTTCCCAATCCTTTCAGCATCTATTTACACGATACGCCTTCCAAATATCTGTTTCAGAAGGATATTCGTACTTTC
AGCTCGGGTTGTATCCGTCTGGAGAAGCCATTGCAACTGGCAGAGTTTGTCTTAGGGCAATCATTTGAACAAGCCGATAT
TGCTGAAAAAATCAGCAGTGGCAAGACACAAACCGTGCATTTACCTGAAAAAATACCTGTTTATTTATTGTATCTGACCG
CTTGGAGCGATGAGCAGGGCGAAGTTTACTTTTCATCCGATGTCTACGGGCGTGACAAACGGGCGCTGGCATACGCCCAC
TGGTAA

Upstream 100 bases:

>100_bases
GATTTTCATTTTATCAACCCGGGTAGGTATGATAAAAAACATATCTTTACAAAATATCTTTTAAAAACTGCTCTGGGTAC
AGAGGGAAAACTGTCTGATA

Downstream 100 bases:

>100_bases
CAGCCGGAAAAGTGTCTATGACAGTCTTTTTAATTTGGCACGATCATGGAGGATAACAATGTCCAAACTTATCATTGCAG
ACAATCTGGAAACACTTACC

Product: peptidoglycan binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 561; Mature: 560

Protein sequence:

>561_residues
MALLNREYRNIFLLFIQNSKKFWINPSAAARYLTFLALMFTILPVIAENWIASAESIREQLAKNIQNNQDSAVQINLQRF
YAQRDYQPVWTLAGHSAVLLDTALVLIRQADEEGLSSNDYHIESLRKLRNETSDPISLLLELDTTRSLLALAHDLHSGRL
TASLADPDWHIPQQQFDPVTFLQQALTSGKLEQAFADLPPDIPQYRSLKQLLNKFRTLVAADTIWTRIPEETSLIRPHTR
HTSIPQVRQRIQEAYHIFEKPEYGIVVSDSEFYDDQLEIAVKAFQRQHGLNADGIIGKNTRRAMNITPGEHVQQLRITLE
RLRWLPRKLGDRYILVNIAGFNLVAVQENVRVLDMKIVVGRDYRSTPSFNSKITHLVLNPYWNVPASIARKDLLPKQRYN
PDYFASEGIRVFSDYKYESELNPDFIDWHSTSRSLPYILRQDPGRRNALGTIKFMFPNPFSIYLHDTPSKYLFQKDIRTF
SSGCIRLEKPLQLAEFVLGQSFEQADIAEKISSGKTQTVHLPEKIPVYLLYLTAWSDEQGEVYFSSDVYGRDKRALAYAH
W

Sequences:

>Translated_561_residues
MALLNREYRNIFLLFIQNSKKFWINPSAAARYLTFLALMFTILPVIAENWIASAESIREQLAKNIQNNQDSAVQINLQRF
YAQRDYQPVWTLAGHSAVLLDTALVLIRQADEEGLSSNDYHIESLRKLRNETSDPISLLLELDTTRSLLALAHDLHSGRL
TASLADPDWHIPQQQFDPVTFLQQALTSGKLEQAFADLPPDIPQYRSLKQLLNKFRTLVAADTIWTRIPEETSLIRPHTR
HTSIPQVRQRIQEAYHIFEKPEYGIVVSDSEFYDDQLEIAVKAFQRQHGLNADGIIGKNTRRAMNITPGEHVQQLRITLE
RLRWLPRKLGDRYILVNIAGFNLVAVQENVRVLDMKIVVGRDYRSTPSFNSKITHLVLNPYWNVPASIARKDLLPKQRYN
PDYFASEGIRVFSDYKYESELNPDFIDWHSTSRSLPYILRQDPGRRNALGTIKFMFPNPFSIYLHDTPSKYLFQKDIRTF
SSGCIRLEKPLQLAEFVLGQSFEQADIAEKISSGKTQTVHLPEKIPVYLLYLTAWSDEQGEVYFSSDVYGRDKRALAYAH
W
>Mature_560_residues
ALLNREYRNIFLLFIQNSKKFWINPSAAARYLTFLALMFTILPVIAENWIASAESIREQLAKNIQNNQDSAVQINLQRFY
AQRDYQPVWTLAGHSAVLLDTALVLIRQADEEGLSSNDYHIESLRKLRNETSDPISLLLELDTTRSLLALAHDLHSGRLT
ASLADPDWHIPQQQFDPVTFLQQALTSGKLEQAFADLPPDIPQYRSLKQLLNKFRTLVAADTIWTRIPEETSLIRPHTRH
TSIPQVRQRIQEAYHIFEKPEYGIVVSDSEFYDDQLEIAVKAFQRQHGLNADGIIGKNTRRAMNITPGEHVQQLRITLER
LRWLPRKLGDRYILVNIAGFNLVAVQENVRVLDMKIVVGRDYRSTPSFNSKITHLVLNPYWNVPASIARKDLLPKQRYNP
DYFASEGIRVFSDYKYESELNPDFIDWHSTSRSLPYILRQDPGRRNALGTIKFMFPNPFSIYLHDTPSKYLFQKDIRTFS
SGCIRLEKPLQLAEFVLGQSFEQADIAEKISSGKTQTVHLPEKIPVYLLYLTAWSDEQGEVYFSSDVYGRDKRALAYAHW

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=408, Percent_Identity=34.5588235294118, Blast_Score=231, Evalue=7e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 64783; Mature: 64651

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALLNREYRNIFLLFIQNSKKFWINPSAAARYLTFLALMFTILPVIAENWIASAESIREQ
CCCCCCCCCEEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAKNIQNNQDSAVQINLQRFYAQRDYQPVWTLAGHSAVLLDTALVLIRQADEEGLSSNDY
HHHHHCCCCCCEEEEEHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
HIESLRKLRNETSDPISLLLELDTTRSLLALAHDLHSGRLTASLADPDWHIPQQQFDPVT
HHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCHHH
FLQQALTSGKLEQAFADLPPDIPQYRSLKQLLNKFRTLVAADTIWTRIPEETSLIRPHTR
HHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
HTSIPQVRQRIQEAYHIFEKPEYGIVVSDSEFYDDQLEIAVKAFQRQHGLNADGIIGKNT
CCCCHHHHHHHHHHHHHHCCCCCCEEECCCHHCCHHHHHHHHHHHHHCCCCCCCEECCCC
RRAMNITPGEHVQQLRITLERLRWLPRKLGDRYILVNIAGFNLVAVQENVRVLDMKIVVG
CCEEECCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCEEEEEECCCEEEEEEEEEC
RDYRSTPSFNSKITHLVLNPYWNVPASIARKDLLPKQRYNPDYFASEGIRVFSDYKYESE
CCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCHHCCCCEEEECCCCCCC
LNPDFIDWHSTSRSLPYILRQDPGRRNALGTIKFMFPNPFSIYLHDTPSKYLFQKDIRTF
CCCCEEECCCCCCCCCCCEECCCCCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHH
SSGCIRLEKPLQLAEFVLGQSFEQADIAEKISSGKTQTVHLPEKIPVYLLYLTAWSDEQG
HCCCEEECCHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCEEEEEEEECCCCCC
EVYFSSDVYGRDKRALAYAHW
CEEEECCCCCCCCCEEEEECC
>Mature Secondary Structure 
ALLNREYRNIFLLFIQNSKKFWINPSAAARYLTFLALMFTILPVIAENWIASAESIREQ
CCCCCCCCEEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAKNIQNNQDSAVQINLQRFYAQRDYQPVWTLAGHSAVLLDTALVLIRQADEEGLSSNDY
HHHHHCCCCCCEEEEEHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
HIESLRKLRNETSDPISLLLELDTTRSLLALAHDLHSGRLTASLADPDWHIPQQQFDPVT
HHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCHHH
FLQQALTSGKLEQAFADLPPDIPQYRSLKQLLNKFRTLVAADTIWTRIPEETSLIRPHTR
HHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
HTSIPQVRQRIQEAYHIFEKPEYGIVVSDSEFYDDQLEIAVKAFQRQHGLNADGIIGKNT
CCCCHHHHHHHHHHHHHHCCCCCCEEECCCHHCCHHHHHHHHHHHHHCCCCCCCEECCCC
RRAMNITPGEHVQQLRITLERLRWLPRKLGDRYILVNIAGFNLVAVQENVRVLDMKIVVG
CCEEECCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCEEEEEECCCEEEEEEEEEC
RDYRSTPSFNSKITHLVLNPYWNVPASIARKDLLPKQRYNPDYFASEGIRVFSDYKYESE
CCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCHHCCCCEEEECCCCCCC
LNPDFIDWHSTSRSLPYILRQDPGRRNALGTIKFMFPNPFSIYLHDTPSKYLFQKDIRTF
CCCCEEECCCCCCCCCCCEECCCCCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHH
SSGCIRLEKPLQLAEFVLGQSFEQADIAEKISSGKTQTVHLPEKIPVYLLYLTAWSDEQG
HCCCEEECCHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCEEEEEEEECCCCCC
EVYFSSDVYGRDKRALAYAHW
CEEEECCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]