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The map label for this gene is ygaD [H]

Identifier: 114332468

GI number: 114332468

Start: 2648732

End: 2649274

Strand: Direct

Name: ygaD [H]

Synonym: Neut_2521

Alternate gene names: 114332468

Gene position: 2648732-2649274 (Clockwise)

Preceding gene: 114332467

Following gene: 114332477

Centisome position: 99.54

GC content: 55.06

Gene sequence:

>543_bases
TTGAGCGCTTACCCAACCATTCCGGATGACGTAACGCTGCTGGAATTCGCCCGCCAAACCGGACAAACTCTCAAAAATAA
CGGGTTGAAGCTGGTTTCAGCAGAATCCTGCACCGGCGGCTGGATCGGGCAGATCGTCACCGCCATTTCCGGCAGCTCCG
CCTGGTATGATTGCGGTTTCATTAGCTACAGCAATTTATCCAAGCAGCAGCTGTTGCGTGTACAACCACAAACGCTGACA
CAGTTTGGTGCGGTTTCCGAACAAATCGCACGGGAAATGGCGCAAGGTGCGCTCACGATGAGCCAGGCTCAGGTTGCAGT
GTCCGTAACCGGCATCGCCGGCCCTACCGGCGGTTCCACAGAAAAACCGGTCGGCACCGTTTGTTTCGCCTGGATACTGG
AGAATTCATCTACAACCGCTGCAAACAGCAAAACCTGCCGGTTCCGCGGTGATCGCGAAGCCATCCGGCGACAATCTGTC
GCCACGGCACTGCAAGGTATCCTTGAACTACTGAAAAACGCTACGTCTCTATCCCTTGCCTAA

Upstream 100 bases:

>100_bases
AAGGTGGATTCGGCGTCATGCTGGATGACCTGCTGGCAGCGTTTTATACCCTGCTTTGCCTCGCAGGCTGGAAATCGATG
GTGCTGTTCGAAAGCTACTT

Downstream 100 bases:

>100_bases
GCAGCAGGGTATCCCTGGCCATTGAACCTGGAACACAGATTCAATCATCTGTGTGTTTAATTTGTGCCTCTGTTAGAATC
AGTGCGGGAAGTCGGTCAGA

Product: CinA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MSAYPTIPDDVTLLEFARQTGQTLKNNGLKLVSAESCTGGWIGQIVTAISGSSAWYDCGFISYSNLSKQQLLRVQPQTLT
QFGAVSEQIAREMAQGALTMSQAQVAVSVTGIAGPTGGSTEKPVGTVCFAWILENSSTTAANSKTCRFRGDREAIRRQSV
ATALQGILELLKNATSLSLA

Sequences:

>Translated_180_residues
MSAYPTIPDDVTLLEFARQTGQTLKNNGLKLVSAESCTGGWIGQIVTAISGSSAWYDCGFISYSNLSKQQLLRVQPQTLT
QFGAVSEQIAREMAQGALTMSQAQVAVSVTGIAGPTGGSTEKPVGTVCFAWILENSSTTAANSKTCRFRGDREAIRRQSV
ATALQGILELLKNATSLSLA
>Mature_179_residues
SAYPTIPDDVTLLEFARQTGQTLKNNGLKLVSAESCTGGWIGQIVTAISGSSAWYDCGFISYSNLSKQQLLRVQPQTLTQ
FGAVSEQIAREMAQGALTMSQAQVAVSVTGIAGPTGGSTEKPVGTVCFAWILENSSTTAANSKTCRFRGDREAIRRQSVA
TALQGILELLKNATSLSLA

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=165, Percent_Identity=49.0909090909091, Blast_Score=159, Evalue=8e-41,
Organism=Escherichia coli, GI1787818, Length=134, Percent_Identity=38.0597014925373, Blast_Score=101, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 19039; Mature: 18908

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAYPTIPDDVTLLEFARQTGQTLKNNGLKLVSAESCTGGWIGQIVTAISGSSAWYDCGF
CCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCEEECCC
ISYSNLSKQQLLRVQPQTLTQFGAVSEQIAREMAQGALTMSQAQVAVSVTGIAGPTGGST
CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCC
EKPVGTVCFAWILENSSTTAANSKTCRFRGDREAIRRQSVATALQGILELLKNATSLSLA
CCCHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCHHHCCCC
>Mature Secondary Structure 
SAYPTIPDDVTLLEFARQTGQTLKNNGLKLVSAESCTGGWIGQIVTAISGSSAWYDCGF
CCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCEEECCC
ISYSNLSKQQLLRVQPQTLTQFGAVSEQIAREMAQGALTMSQAQVAVSVTGIAGPTGGST
CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCC
EKPVGTVCFAWILENSSTTAANSKTCRFRGDREAIRRQSVATALQGILELLKNATSLSLA
CCCHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]