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The map label for this gene is ompA [H]

Identifier: 114332455

GI number: 114332455

Start: 2636600

End: 2637295

Strand: Reverse

Name: ompA [H]

Synonym: Neut_2508

Alternate gene names: 114332455

Gene position: 2637295-2636600 (Counterclockwise)

Preceding gene: 114332460

Following gene: 114332454

Centisome position: 99.11

GC content: 47.27

Gene sequence:

>696_bases
ATGAAAAAAATGATATTAGCCAGGAAATATCTGATGGGAGCCGTTATTTTGCCCGGATTGCTGGCATCCGGGATTGTAAT
GGCTAATTTACATGAAGAACAAAGACAAGGCTTCAGCGCGGCAGATAAAGCTGAAGCTTATGCTGTGGATGATAACGGGG
TTGTCGCCAGAAACTCAACAGGCCTATGCTGGCGCACCGGCTACTGGACACCTGCCAAGGCTATTTATGAATGTGATCCT
GATCTGGTCAAGCAACCAGAGCAAGTTGTTGAGGCCCCGCCACCGGTAGTGCCGGTCGTGACTGAACCTGAGAAAGTATC
TTTCTCGGCAGATGCATTGTTTGATTTTGACAAGGCTGTTCTGAAACCAGCCGGTATGCAGGCGCTAGATGATTTTTCCA
GAAACCTGGAAGGGGTGAATTACGATTTGATCATTGCTGTAGGCTATACTGACCGCATCGGCTCGGAAGCGTATAACAAG
AAACTTTCTGTAAGACGCGCAGAAGCCGTCAAAAACTATCTGGTTTCCAAGGGAATCGGTGCAGATCGTATCTTTACCGA
CGGTAAAGGTAAAGCAAATCCGGTTACCGGTGATTCTTGCCAGGGCACTAAAGCAACCAGAACATTAATTAATTGCCTGG
CACCGGATCGTCGTGTGGAAATTGAAGTGGCTGGTACGAGAGAAACCATTAACTAA

Upstream 100 bases:

>100_bases
CGACGAGCGGGAGAGTCATAACAGTATGAATGATCGTATAAAAAAGTGATTGTGGGTGGTTGTGATACAGGTTTTTATAC
TTAAGAACAAGGACAATAGC

Downstream 100 bases:

>100_bases
AATTTACCGCGCATTCAACGTGGATCACCTAAAAGCCCTGCCAGCGTGCAGGGCTTTTGGCTATGAAAGCATGAAAAGTG
ACCCTGTCCTGTCCGATTAA

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MKKMILARKYLMGAVILPGLLASGIVMANLHEEQRQGFSAADKAEAYAVDDNGVVARNSTGLCWRTGYWTPAKAIYECDP
DLVKQPEQVVEAPPPVVPVVTEPEKVSFSADALFDFDKAVLKPAGMQALDDFSRNLEGVNYDLIIAVGYTDRIGSEAYNK
KLSVRRAEAVKNYLVSKGIGADRIFTDGKGKANPVTGDSCQGTKATRTLINCLAPDRRVEIEVAGTRETIN

Sequences:

>Translated_231_residues
MKKMILARKYLMGAVILPGLLASGIVMANLHEEQRQGFSAADKAEAYAVDDNGVVARNSTGLCWRTGYWTPAKAIYECDP
DLVKQPEQVVEAPPPVVPVVTEPEKVSFSADALFDFDKAVLKPAGMQALDDFSRNLEGVNYDLIIAVGYTDRIGSEAYNK
KLSVRRAEAVKNYLVSKGIGADRIFTDGKGKANPVTGDSCQGTKATRTLINCLAPDRRVEIEVAGTRETIN
>Mature_231_residues
MKKMILARKYLMGAVILPGLLASGIVMANLHEEQRQGFSAADKAEAYAVDDNGVVARNSTGLCWRTGYWTPAKAIYECDP
DLVKQPEQVVEAPPPVVPVVTEPEKVSFSADALFDFDKAVLKPAGMQALDDFSRNLEGVNYDLIIAVGYTDRIGSEAYNK
KLSVRRAEAVKNYLVSKGIGADRIFTDGKGKANPVTGDSCQGTKATRTLINCLAPDRRVEIEVAGTRETIN

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1787191, Length=131, Percent_Identity=48.8549618320611, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI48994946, Length=111, Percent_Identity=36.036036036036, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Mi

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 25083; Mature: 25083

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKMILARKYLMGAVILPGLLASGIVMANLHEEQRQGFSAADKAEAYAVDDNGVVARNST
CCHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHCCCCCCCCCCEEEECCCCEEEECCC
GLCWRTGYWTPAKAIYECDPDLVKQPEQVVEAPPPVVPVVTEPEKVSFSADALFDFDKAV
CCEEECCCCCCHHHHEECCHHHHHCCHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
LKPAGMQALDDFSRNLEGVNYDLIIAVGYTDRIGSEAYNKKLSVRRAEAVKNYLVSKGIG
HCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHCHHHHHHHHHHHHHHHHHHHHHHCCCC
ADRIFTDGKGKANPVTGDSCQGTKATRTLINCLAPDRRVEIEVAGTRETIN
CCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MKKMILARKYLMGAVILPGLLASGIVMANLHEEQRQGFSAADKAEAYAVDDNGVVARNST
CCHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHCCCCCCCCCCEEEECCCCEEEECCC
GLCWRTGYWTPAKAIYECDPDLVKQPEQVVEAPPPVVPVVTEPEKVSFSADALFDFDKAV
CCEEECCCCCCHHHHEECCHHHHHCCHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
LKPAGMQALDDFSRNLEGVNYDLIIAVGYTDRIGSEAYNKKLSVRRAEAVKNYLVSKGIG
HCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHCHHHHHHHHHHHHHHHHHHHHHHCCCC
ADRIFTDGKGKANPVTGDSCQGTKATRTLINCLAPDRRVEIEVAGTRETIN
CCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]